avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
BRCA1 Links Ensembl NCBI GeneCards UniProt	ENSG00000012048.15	BRCA1 DNA repair associated

Gene	Promoter	Pearson corr. coef.	P-value	Plot
BRCA1	hg19_v2_chr17_-_41277467_41277510	-0.35	1.4e-01	Click!

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Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.7	GO:0046521	sphingoid catabolic process(GO:0046521)
0.2	1.3	GO:0051673	membrane disruption in other organism(GO:0051673)
0.2	1.0	GO:1901545	cellular response to raffinose(GO:0097403) response to raffinose(GO:1901545)
0.1	0.9	GO:0061034	olfactory bulb mitral cell layer development(GO:0061034)
0.1	2.0	GO:0060613	fat pad development(GO:0060613)
0.1	0.4	GO:0071894	histone H2B conserved C-terminal lysine ubiquitination(GO:0071894)
0.1	0.6	GO:0001555	oocyte growth(GO:0001555)
0.1	0.5	GO:2001288	positive regulation of caveolin-mediated endocytosis(GO:2001288)
0.1	0.5	GO:0044861	protein transport into plasma membrane raft(GO:0044861)
0.1	0.4	GO:0070966	nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966)
0.1	0.8	GO:0000492	box C/D snoRNP assembly(GO:0000492)
0.0	0.2	GO:0042264	peptidyl-aspartic acid hydroxylation(GO:0042264)
0.0	0.1	GO:0046586	regulation of calcium-dependent cell-cell adhesion(GO:0046586)
0.0	0.2	GO:1900827	maintenance of protein location in membrane(GO:0072658) maintenance of protein location in plasma membrane(GO:0072660) positive regulation of membrane depolarization during cardiac muscle cell action potential(GO:1900827)
0.0	0.7	GO:0090527	actin filament reorganization(GO:0090527)
0.0	0.1	GO:0042668	auditory receptor cell fate determination(GO:0042668) negative regulation of auditory receptor cell differentiation(GO:0045608) regulation of timing of neuron differentiation(GO:0060164) negative regulation of pro-B cell differentiation(GO:2000974)
0.0	0.1	GO:0014886	transition between slow and fast fiber(GO:0014886)
0.0	0.1	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990)
0.0	0.5	GO:0097150	neuronal stem cell population maintenance(GO:0097150)
0.0	0.5	GO:0044342	type B pancreatic cell proliferation(GO:0044342)
0.0	0.4	GO:0034380	cartilage condensation(GO:0001502) high-density lipoprotein particle assembly(GO:0034380)
0.0	0.1	GO:0045204	MAPK export from nucleus(GO:0045204)
0.0	0.6	GO:0006607	NLS-bearing protein import into nucleus(GO:0006607)
0.0	0.2	GO:0016926	protein desumoylation(GO:0016926)
0.0	0.1	GO:0061767	negative regulation of lung blood pressure(GO:0061767)

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.8	GO:0000125	PCAF complex(GO:0000125)
0.1	0.9	GO:0045252	oxoglutarate dehydrogenase complex(GO:0045252)
0.0	0.5	GO:0044352	pinosome(GO:0044352) macropinosome(GO:0044354)
0.0	0.6	GO:0044666	MLL3/4 complex(GO:0044666)
0.0	0.4	GO:0070937	CRD-mediated mRNA stability complex(GO:0070937)
0.0	0.1	GO:1990075	kinesin II complex(GO:0016939) periciliary membrane compartment(GO:1990075)
0.0	2.0	GO:0005876	spindle microtubule(GO:0005876)
0.0	0.5	GO:0071564	npBAF complex(GO:0071564)

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.9	GO:0034602	oxoglutarate dehydrogenase (NAD+) activity(GO:0034602)
0.1	0.7	GO:0017050	sphinganine kinase activity(GO:0008481) D-erythro-sphingosine kinase activity(GO:0017050)
0.1	1.3	GO:0042834	peptidoglycan binding(GO:0042834)
0.0	0.8	GO:0001075	transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075)
0.0	1.0	GO:0035925	mRNA 3'-UTR AU-rich region binding(GO:0035925)
0.0	0.5	GO:0019870	potassium channel inhibitor activity(GO:0019870)
0.0	3.1	GO:0005044	scavenger receptor activity(GO:0005044)
0.0	0.2	GO:0070137	ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0	0.6	GO:0042800	histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0	0.2	GO:0071532	ankyrin repeat binding(GO:0071532)
0.0	2.3	GO:0008013	beta-catenin binding(GO:0008013)
0.0	0.5	GO:0051010	microtubule plus-end binding(GO:0051010)

Gene overrepresentation in C2:CP category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	PID S1P META PATHWAY	Sphingosine 1-phosphate (S1P) pathway
0.0	0.8	PID MYC PATHWAY	C-MYC pathway
0.0	2.0	PID BETA CATENIN NUC PATHWAY	Regulation of nuclear beta catenin signaling and target gene transcription

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.0	REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA	Genes involved in Circadian Repression of Expression by REV-ERBA
0.0	1.0	REACTOME DESTABILIZATION OF MRNA BY BRF1	Genes involved in Destabilization of mRNA by Butyrate Response Factor 1 (BRF1)
0.0	0.9	REACTOME CITRIC ACID CYCLE TCA CYCLE	Genes involved in Citric acid cycle (TCA cycle)
0.0	0.7	REACTOME REGULATION OF AMPK ACTIVITY VIA LKB1	Genes involved in Regulation of AMPK activity via LKB1
0.0	0.4	REACTOME HDL MEDIATED LIPID TRANSPORT	Genes involved in HDL-mediated lipid transport
0.0	0.7	REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS	Genes involved in Sphingolipid de novo biosynthesis