avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Name	miRBASE accession
hsa-miR-338-3p Links miRBase	MIMAT0000763

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Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	1.1	GO:0002605	negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581) negative regulation of dendritic cell antigen processing and presentation(GO:0002605) negative regulation of endothelial cell chemotaxis(GO:2001027)
0.1	0.6	GO:0043553	vascular endothelial growth factor receptor-2 signaling pathway(GO:0036324) negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.1	0.6	GO:0072675	multinuclear osteoclast differentiation(GO:0072674) osteoclast fusion(GO:0072675)
0.1	0.3	GO:0035910	N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.1	0.4	GO:0042335	cuticle development(GO:0042335)
0.1	0.2	GO:0044691	tooth eruption(GO:0044691)
0.0	0.3	GO:0022614	membrane to membrane docking(GO:0022614)
0.0	0.4	GO:0021759	globus pallidus development(GO:0021759)
0.0	0.1	GO:0035284	rhombomere 5 development(GO:0021571) central nervous system segmentation(GO:0035283) brain segmentation(GO:0035284)
0.0	0.4	GO:0060613	fat pad development(GO:0060613)
0.0	0.4	GO:0071680	response to indole-3-methanol(GO:0071680) cellular response to indole-3-methanol(GO:0071681)
0.0	0.3	GO:0070459	prolactin secretion(GO:0070459)
0.0	0.1	GO:0035616	histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.0	0.3	GO:0045078	positive regulation of interferon-gamma biosynthetic process(GO:0045078)
0.0	0.1	GO:0023016	signal transduction by trans-phosphorylation(GO:0023016)
0.0	0.1	GO:0090650	response to oxygen-glucose deprivation(GO:0090649) cellular response to oxygen-glucose deprivation(GO:0090650)
0.0	0.1	GO:0007493	endodermal cell fate determination(GO:0007493)
0.0	0.3	GO:0015693	magnesium ion transport(GO:0015693)
0.0	0.4	GO:0014877	response to muscle inactivity involved in regulation of muscle adaptation(GO:0014877) response to denervation involved in regulation of muscle adaptation(GO:0014894)
0.0	0.1	GO:0006740	NADPH regeneration(GO:0006740)
0.0	0.1	GO:0060011	Sertoli cell proliferation(GO:0060011)
0.0	0.2	GO:0030578	PML body organization(GO:0030578)
0.0	0.1	GO:0042264	peptidyl-aspartic acid hydroxylation(GO:0042264)
0.0	0.1	GO:0007181	transforming growth factor beta receptor complex assembly(GO:0007181)
0.0	0.1	GO:0019858	cytosine metabolic process(GO:0019858)
0.0	0.1	GO:0006880	intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0	0.7	GO:0050427	purine ribonucleoside bisphosphate metabolic process(GO:0034035) 3'-phosphoadenosine 5'-phosphosulfate metabolic process(GO:0050427)
0.0	0.2	GO:2000767	positive regulation of cytoplasmic translation(GO:2000767)
0.0	0.2	GO:0021999	neural plate anterior/posterior regionalization(GO:0021999)
0.0	0.2	GO:0010994	regulation of ubiquitin homeostasis(GO:0010993) free ubiquitin chain polymerization(GO:0010994)
0.0	0.1	GO:0032208	regulation of telomere maintenance via recombination(GO:0032207) negative regulation of telomere maintenance via recombination(GO:0032208) negative regulation of single strand break repair(GO:1903517) negative regulation of beta-galactosidase activity(GO:1903770) telomere single strand break repair(GO:1903823) negative regulation of telomere single strand break repair(GO:1903824)
0.0	0.1	GO:0003357	noradrenergic neuron differentiation(GO:0003357)
0.0	0.1	GO:0002949	tRNA threonylcarbamoyladenosine modification(GO:0002949)
0.0	0.1	GO:1904217	regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity(GO:1904217) positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity(GO:1904219) positive regulation of serine C-palmitoyltransferase activity(GO:1904222)
0.0	0.1	GO:0036369	transcription factor catabolic process(GO:0036369)
0.0	0.1	GO:0001867	complement activation, lectin pathway(GO:0001867)

Gene overrepresentation in cellular_component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.6	GO:1990032	parallel fiber(GO:1990032)
0.1	1.1	GO:0005577	fibrinogen complex(GO:0005577)
0.1	0.2	GO:0005584	collagen type I trimer(GO:0005584)
0.0	0.3	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.0	0.5	GO:0016600	flotillin complex(GO:0016600)
0.0	0.1	GO:0030289	protein phosphatase 4 complex(GO:0030289)
0.0	0.5	GO:0031235	intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.0	0.1	GO:0005606	laminin-1 complex(GO:0005606) laminin-11 complex(GO:0043260)
0.0	0.3	GO:0032433	filopodium tip(GO:0032433)
0.0	0.1	GO:0044326	dendritic spine neck(GO:0044326)
0.0	0.3	GO:0031254	uropod(GO:0001931) cell trailing edge(GO:0031254)
0.0	0.0	GO:0036284	tubulobulbar complex(GO:0036284)
0.0	0.0	GO:0043614	multi-eIF complex(GO:0043614) translation preinitiation complex(GO:0070993) glial limiting end-foot(GO:0097451)

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.1	GO:0070052	collagen V binding(GO:0070052)
0.1	0.6	GO:0035662	Toll-like receptor 4 binding(GO:0035662)
0.0	0.1	GO:0016652	NAD(P)+ transhydrogenase activity(GO:0008746) oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor(GO:0016652)
0.0	0.5	GO:0019870	potassium channel inhibitor activity(GO:0019870)
0.0	0.6	GO:0016176	superoxide-generating NADPH oxidase activator activity(GO:0016176)
0.0	0.7	GO:0004062	aryl sulfotransferase activity(GO:0004062)
0.0	0.4	GO:0016174	NAD(P)H oxidase activity(GO:0016174)
0.0	0.4	GO:0044213	intronic transcription regulatory region sequence-specific DNA binding(GO:0001161) intronic transcription regulatory region DNA binding(GO:0044213)
0.0	0.1	GO:0050115	myosin-light-chain-phosphatase activity(GO:0050115)
0.0	0.1	GO:0004572	mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity(GO:0004572)
0.0	0.4	GO:0032794	GTPase activating protein binding(GO:0032794)
0.0	0.1	GO:0061628	H3K27me3 modified histone binding(GO:0061628)
0.0	0.3	GO:0015095	magnesium ion transmembrane transporter activity(GO:0015095)
0.0	0.0	GO:0008330	protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0	0.1	GO:0061649	ubiquitinated histone binding(GO:0061649)
0.0	0.2	GO:0048407	platelet-derived growth factor binding(GO:0048407)
0.0	0.1	GO:0050509	N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity(GO:0050509)
0.0	0.3	GO:0001087	transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0	0.1	GO:0047522	13-prostaglandin reductase activity(GO:0036132) 15-oxoprostaglandin 13-oxidase activity(GO:0047522)
0.0	0.2	GO:0004726	non-membrane spanning protein tyrosine phosphatase activity(GO:0004726)
0.0	0.0	GO:0008124	phenylalanine 4-monooxygenase activity(GO:0004505) 4-alpha-hydroxytetrahydrobiopterin dehydratase activity(GO:0008124)
0.0	0.2	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity(GO:0004723)

Gene overrepresentation in C2:CP category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	1.5	PID INTEGRIN3 PATHWAY	Beta3 integrin cell surface interactions
0.0	1.1	PID RAS PATHWAY	Regulation of Ras family activation

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES	Genes involved in Cytosolic sulfonation of small molecules
0.0	0.4	REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS	Genes involved in Apoptotic cleavage of cell adhesion proteins
0.0	0.2	REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN	Genes involved in Platelet Adhesion to exposed collagen