ISMARA results: HOXC9

Project

avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

Navigation

Downloads

Results for HOXC9

Z-value: 2.04

Motif logo

Transcription factors associated with HOXC9

Gene Symbol	Gene ID	Gene Info
HOXC9 Ensembl NCBI GeneCards UniProt	ENSG00000180806.4	homeobox C9

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
HOXC9	hg19_v2_chr12_+_54393880_54393962	0.50	2.5e-02	Click!

Activity profile of HOXC9 motif

Sorted Z-values of HOXC9 motif

No targets for HOXC9

Network of associatons between targets according to the STRING database.

First level regulatory network of HOXC9

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	5.9	GO:0072709	cellular response to sorbitol(GO:0072709)
0.1	4.3	GO:0043252	sodium-independent organic anion transport(GO:0043252)
0.1	4.1	GO:0051894	positive regulation of focal adhesion assembly(GO:0051894)
0.0	4.1	GO:0042246	tissue regeneration(GO:0042246)
1.2	3.6	GO:0017186	peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase(GO:0017186)
0.1	3.6	GO:0031915	positive regulation of synaptic plasticity(GO:0031915)
0.8	3.3	GO:0006428	isoleucyl-tRNA aminoacylation(GO:0006428)
0.0	3.0	GO:0007588	excretion(GO:0007588)
0.5	2.9	GO:0035407	histone H3-T11 phosphorylation(GO:0035407)
0.9	2.8	GO:0009786	regulation of asymmetric cell division(GO:0009786)

Showing 1 to 10 of 144 entries

Gene overrepresentation in cellular_component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.8	GO:0017101	aminoacyl-tRNA synthetase multienzyme complex(GO:0017101)
0.4	3.6	GO:0070033	synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex(GO:0070033) synaptobrevin 2-SNAP-25-syntaxin-3-complexin complex(GO:0070554)
0.0	3.6	GO:0035580	specific granule lumen(GO:0035580)
0.1	3.4	GO:0035371	microtubule plus-end(GO:0035371)
0.0	2.9	GO:0000794	condensed nuclear chromosome(GO:0000794)
0.2	2.8	GO:0072687	meiotic spindle(GO:0072687)
0.1	2.4	GO:0032591	dendritic spine membrane(GO:0032591)
0.1	2.3	GO:0072559	NLRP3 inflammasome complex(GO:0072559)
0.1	2.3	GO:0000940	condensed chromosome outer kinetochore(GO:0000940)
0.0	2.3	GO:0016323	basolateral plasma membrane(GO:0016323)

Showing 1 to 10 of 61 entries

Gene overrepresentation in molecular_function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	5.9	GO:0004708	MAP kinase kinase activity(GO:0004708)
0.7	4.1	GO:0032089	NACHT domain binding(GO:0032089)
0.1	4.0	GO:0015125	bile acid transmembrane transporter activity(GO:0015125)
0.1	4.0	GO:0017075	syntaxin-1 binding(GO:0017075)
1.2	3.6	GO:0016603	glutaminyl-peptide cyclotransferase activity(GO:0016603)
0.8	3.3	GO:0004822	isoleucine-tRNA ligase activity(GO:0004822)
0.5	2.9	GO:0035402	histone kinase activity (H3-T11 specific)(GO:0035402)
0.1	2.5	GO:0005385	zinc ion transmembrane transporter activity(GO:0005385)
0.6	2.4	GO:0004057	arginyltransferase activity(GO:0004057)
0.1	2.4	GO:0005388	calcium-transporting ATPase activity(GO:0005388)

Showing 1 to 10 of 103 entries

Gene overrepresentation in C2:CP category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	6.8	PID P38 GAMMA DELTA PATHWAY	Signaling mediated by p38-gamma and p38-delta
0.0	4.4	PID ILK PATHWAY	Integrin-linked kinase signaling
0.0	3.5	PID CDC42 REG PATHWAY	Regulation of CDC42 activity
0.2	2.9	SA G2 AND M PHASES	Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.
0.0	2.5	PID NETRIN PATHWAY	Netrin-mediated signaling events
0.0	2.5	PID NEPHRIN NEPH1 PATHWAY	Nephrin/Neph1 signaling in the kidney podocyte
0.0	2.5	PID PDGFRB PATHWAY	PDGFR-beta signaling pathway
0.0	1.9	PID CMYB PATHWAY	C-MYB transcription factor network
0.0	1.5	PID RAC1 REG PATHWAY	Regulation of RAC1 activity
0.0	1.3	PID IL6 7 PATHWAY	IL6-mediated signaling events

Showing 1 to 10 of 18 entries

Gene overrepresentation in C2:CP:REACTOME category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	6.4	REACTOME ACTIVATED TAK1 MEDIATES P38 MAPK ACTIVATION	Genes involved in activated TAK1 mediates p38 MAPK activation
0.0	4.9	REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS	Genes involved in Golgi Associated Vesicle Biogenesis
0.0	4.6	REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION	Genes involved in Factors involved in megakaryocyte development and platelet production
0.2	3.9	REACTOME RECYCLING OF BILE ACIDS AND SALTS	Genes involved in Recycling of bile acids and salts
0.1	3.8	REACTOME CYTOSOLIC TRNA AMINOACYLATION	Genes involved in Cytosolic tRNA aminoacylation
0.1	3.7	REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS	Genes involved in Cell-extracellular matrix interactions
0.1	2.9	REACTOME G2 M DNA DAMAGE CHECKPOINT	Genes involved in G2/M DNA damage checkpoint
0.1	2.5	REACTOME ZINC TRANSPORTERS	Genes involved in Zinc transporters
0.0	2.4	REACTOME DARPP 32 EVENTS	Genes involved in DARPP-32 events
0.0	2.4	REACTOME NETRIN1 SIGNALING	Genes involved in Netrin-1 signaling

Showing 1 to 10 of 44 entries

Results for HOXC9

Z-value: 2.04

Motif logo

Transcription factors associated with HOXC9

Activity-expression correlation:

Activity profile of HOXC9 motif

Sorted Z-values of HOXC9 motif

No targets for HOXC9

Network of associatons between targets according to the STRING database.

First level regulatory network of HOXC9

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in C2:CP category:

Gene overrepresentation in C2:CP:REACTOME category: