ISMARA results: PRDM4

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avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

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Results for PRDM4

Z-value: 0.80

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Transcription factors associated with PRDM4

Gene Symbol	Gene ID	Gene Info
PRDM4 Ensembl NCBI GeneCards UniProt	ENSG00000110851.7	PR/SET domain 4

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
PRDM4	hg19_v2_chr12_-_108154925_108154945	-0.51	2.1e-02	Click!

Activity profile of PRDM4 motif

Sorted Z-values of PRDM4 motif

No targets for PRDM4

Network of associatons between targets according to the STRING database.

First level regulatory network of PRDM4

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.3	6.7	GO:0060741	prostate gland stromal morphogenesis(GO:0060741)
0.3	3.3	GO:0003150	muscular septum morphogenesis(GO:0003150)
0.2	2.2	GO:0001887	selenium compound metabolic process(GO:0001887)
0.6	1.7	GO:0061580	colon epithelial cell migration(GO:0061580)
0.1	1.7	GO:0046339	diacylglycerol metabolic process(GO:0046339)
0.4	1.1	GO:0001994	norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure(GO:0001994)
0.0	1.0	GO:1902259	regulation of delayed rectifier potassium channel activity(GO:1902259)
0.0	1.0	GO:0000413	protein peptidyl-prolyl isomerization(GO:0000413)
0.0	0.8	GO:0016254	preassembly of GPI anchor in ER membrane(GO:0016254)
0.0	0.8	GO:0045746	negative regulation of Notch signaling pathway(GO:0045746)

Showing 1 to 10 of 28 entries

Gene overrepresentation in cellular_component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.4	GO:0030669	clathrin-coated endocytic vesicle membrane(GO:0030669)
0.0	1.8	GO:0005791	rough endoplasmic reticulum(GO:0005791)
0.3	1.1	GO:1990423	RZZ complex(GO:1990423)
0.1	0.8	GO:0031501	mannosyltransferase complex(GO:0031501)
0.0	0.3	GO:0002199	zona pellucida receptor complex(GO:0002199)
0.0	0.2	GO:0030896	checkpoint clamp complex(GO:0030896)

Showing 1 to 6 of 6 entries

Gene overrepresentation in molecular_function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	6.8	GO:0003680	AT DNA binding(GO:0003680)
0.1	3.3	GO:0042813	Wnt-activated receptor activity(GO:0042813)
0.4	2.2	GO:0098625	methylselenol reductase activity(GO:0098625) methylseleninic acid reductase activity(GO:0098626)
0.4	1.7	GO:0003943	N-acetylgalactosamine-4-sulfatase activity(GO:0003943)
0.1	1.7	GO:0008420	CTD phosphatase activity(GO:0008420)
0.1	1.7	GO:0004143	diacylglycerol kinase activity(GO:0004143)
0.2	1.1	GO:0004936	alpha-adrenergic receptor activity(GO:0004936)
0.0	1.0	GO:0005251	delayed rectifier potassium channel activity(GO:0005251)
0.0	1.0	GO:0005527	macrolide binding(GO:0005527) FK506 binding(GO:0005528)
0.3	0.8	GO:0004584	dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity(GO:0004584)

Showing 1 to 10 of 20 entries

Gene overrepresentation in C2:CP category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.3	PID WNT SIGNALING PATHWAY	Wnt signaling network
0.0	1.7	PID SMAD2 3PATHWAY	Regulation of cytoplasmic and nuclear SMAD2/3 signaling

Showing 1 to 2 of 2 entries

Gene overrepresentation in C2:CP:REACTOME category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.3	REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS	Genes involved in Class B/2 (Secretin family receptors)
0.0	2.2	REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES	Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
0.1	1.7	REACTOME THE ACTIVATION OF ARYLSULFATASES	Genes involved in The activation of arylsulfatases
0.0	1.7	REACTOME EFFECTS OF PIP2 HYDROLYSIS	Genes involved in Effects of PIP2 hydrolysis
0.0	1.2	REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S	Genes involved in Activation of Chaperone Genes by XBP1(S)
0.0	1.1	REACTOME AMINE LIGAND BINDING RECEPTORS	Genes involved in Amine ligand-binding receptors
0.0	1.0	REACTOME VOLTAGE GATED POTASSIUM CHANNELS	Genes involved in Voltage gated Potassium channels
0.0	0.8	REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI	Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)

Showing 1 to 8 of 8 entries

Results for PRDM4

Z-value: 0.80

Motif logo

Transcription factors associated with PRDM4

Activity-expression correlation:

Activity profile of PRDM4 motif

Sorted Z-values of PRDM4 motif

No targets for PRDM4

Network of associatons between targets according to the STRING database.

First level regulatory network of PRDM4

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in C2:CP category:

Gene overrepresentation in C2:CP:REACTOME category: