ISMARA results: VSX1

Project

avrg: SARS-CoV-2 Analysis Results (GEO series: GSE147507)

Navigation

Downloads

Results for VSX1

Z-value: 0.80

Motif logo

Transcription factors associated with VSX1

Gene Symbol	Gene ID	Gene Info
VSX1 Ensembl NCBI GeneCards UniProt	ENSG00000100987.10	visual system homeobox 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
VSX1	hg19_v2_chr20_-_25062767_25062779	0.48	3.1e-02	Click!

Activity profile of VSX1 motif

Sorted Z-values of VSX1 motif

No targets for VSX1

Network of associatons between targets according to the STRING database.

First level regulatory network of VSX1

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.3	GO:0006120	mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.2	1.8	GO:0009753	response to jasmonic acid(GO:0009753) cellular response to jasmonic acid stimulus(GO:0071395)
0.2	1.7	GO:0006572	tyrosine catabolic process(GO:0006572)
0.0	1.5	GO:0051412	response to corticosterone(GO:0051412)
0.0	1.4	GO:0006825	copper ion transport(GO:0006825)
0.0	1.4	GO:0042776	mitochondrial ATP synthesis coupled proton transport(GO:0042776)
0.0	1.3	GO:0007520	myoblast fusion(GO:0007520)
0.3	1.2	GO:0006114	glycerol biosynthetic process(GO:0006114)
0.3	1.0	GO:0006258	UDP-glucose catabolic process(GO:0006258)
0.2	1.0	GO:0016480	negative regulation of transcription from RNA polymerase III promoter(GO:0016480)

Showing 1 to 10 of 106 entries

Gene overrepresentation in cellular_component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.3	GO:0005747	mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.1	1.9	GO:0034709	methylosome(GO:0034709)
0.0	1.7	GO:0030173	integral component of Golgi membrane(GO:0030173)
0.1	1.3	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.0	1.1	GO:0033202	Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0	1.1	GO:0031304	intrinsic component of mitochondrial inner membrane(GO:0031304) integral component of mitochondrial inner membrane(GO:0031305)
0.1	0.8	GO:0000176	nuclear exosome (RNase complex)(GO:0000176)
0.0	0.8	GO:0060077	inhibitory synapse(GO:0060077)
0.1	0.7	GO:0072669	tRNA-splicing ligase complex(GO:0072669)
0.0	0.7	GO:0033276	transcription factor TFTC complex(GO:0033276)

Showing 1 to 10 of 43 entries

Gene overrepresentation in molecular_function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.4	GO:0051539	4 iron, 4 sulfur cluster binding(GO:0051539)
0.3	1.8	GO:0047086	phenanthrene 9,10-monooxygenase activity(GO:0018636) ketosteroid monooxygenase activity(GO:0047086)
0.0	1.7	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.1	1.4	GO:0016724	ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.0	1.4	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.3	1.0	GO:0000994	RNA polymerase III core binding(GO:0000994)
0.2	1.0	GO:0098519	nucleotide phosphatase activity, acting on free nucleotides(GO:0098519)
0.1	1.0	GO:0044020	histone methyltransferase activity (H4-R3 specific)(GO:0044020)
0.1	1.0	GO:0050694	galactosylceramide sulfotransferase activity(GO:0001733) galactose 3-O-sulfotransferase activity(GO:0050694)
0.1	1.0	GO:0070569	uridylyltransferase activity(GO:0070569)

Showing 1 to 10 of 73 entries

Gene overrepresentation in C2:CP category:

Search:

Show entries

Total log-likelihood	Term	Description
0.6	PID RANBP2 PATHWAY	Sumoylation by RanBP2 regulates transcriptional repression
0.6	ST PHOSPHOINOSITIDE 3 KINASE PATHWAY	PI3K Pathway
0.5	PID FOXM1 PATHWAY	FOXM1 transcription factor network
0.5	SA REG CASCADE OF CYCLIN EXPR	Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.3	PID ATR PATHWAY	ATR signaling pathway
0.3	PID TCR RAS PATHWAY	Ras signaling in the CD4+ TCR pathway

Showing 1 to 6 of 6 entries

Gene overrepresentation in C2:CP:REACTOME category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.3	REACTOME RESPIRATORY ELECTRON TRANSPORT	Genes involved in Respiratory electron transport
0.1	1.4	REACTOME FORMATION OF ATP BY CHEMIOSMOTIC COUPLING	Genes involved in Formation of ATP by chemiosmotic coupling
0.0	1.4	REACTOME IRON UPTAKE AND TRANSPORT	Genes involved in Iron uptake and transport
0.0	1.3	REACTOME MRNA 3 END PROCESSING	Genes involved in mRNA 3'-end processing
0.0	1.0	REACTOME GLYCOSPHINGOLIPID METABOLISM	Genes involved in Glycosphingolipid metabolism
0.0	0.9	REACTOME SOS MEDIATED SIGNALLING	Genes involved in SOS-mediated signalling
0.1	0.8	REACTOME MRNA DECAY BY 3 TO 5 EXORIBONUCLEASE	Genes involved in mRNA Decay by 3' to 5' Exoribonuclease
0.0	0.7	REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS	Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
0.0	0.6	REACTOME MITOCHONDRIAL TRNA AMINOACYLATION	Genes involved in Mitochondrial tRNA aminoacylation
0.0	0.6	REACTOME G0 AND EARLY G1	Genes involved in G0 and Early G1

Showing 1 to 10 of 22 entries

Results for VSX1

Z-value: 0.80

Motif logo

Transcription factors associated with VSX1

Activity-expression correlation:

Activity profile of VSX1 motif

Sorted Z-values of VSX1 motif

No targets for VSX1

Network of associatons between targets according to the STRING database.

First level regulatory network of VSX1

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in C2:CP category:

Gene overrepresentation in C2:CP:REACTOME category: