Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
E2F2 | hg38_v1_chr1_-_23531206_23531241 | 0.77 | 2.5e-02 | Click! |
E2F5 | hg38_v1_chr8_+_85209213_85209270 | -0.62 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_35769928 Show fit | 2.24 |
ENST00000373220.7
ENST00000520551.1 |
claspin |
|
chr2_+_27275466 Show fit | 1.95 |
ENST00000404433.5
ENST00000406962.1 |
DnaJ heat shock protein family (Hsp40) member C5 gamma |
|
chr2_+_27275429 Show fit | 1.93 |
ENST00000420191.5
ENST00000296097.8 |
DnaJ heat shock protein family (Hsp40) member C5 gamma |
|
chr2_+_27275461 Show fit | 1.92 |
ENST00000402462.5
|
DnaJ heat shock protein family (Hsp40) member C5 gamma |
|
chr1_-_35769958 Show fit | 1.77 |
ENST00000251195.9
ENST00000318121.8 |
claspin |
|
chr11_-_19241598 Show fit | 1.43 |
ENST00000532666.1
ENST00000527884.5 ENST00000620009.4 |
E2F transcription factor 8 |
|
chr20_-_33686371 Show fit | 1.38 |
ENST00000343380.6
|
E2F transcription factor 1 |
|
chr11_-_19240936 Show fit | 1.33 |
ENST00000250024.9
|
E2F transcription factor 8 |
|
chr13_+_32315468 Show fit | 1.30 |
ENST00000530893.6
ENST00000380152.8 |
BRCA2 DNA repair associated |
|
chr13_+_32315071 Show fit | 1.30 |
ENST00000544455.6
|
BRCA2 DNA repair associated |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 4.3 | GO:1990426 | homologous recombination-dependent replication fork processing(GO:1990426) |
0.4 | 4.2 | GO:0033314 | mitotic DNA replication checkpoint(GO:0033314) |
0.1 | 3.2 | GO:0006270 | DNA replication initiation(GO:0006270) |
0.9 | 2.8 | GO:0032877 | positive regulation of DNA endoreduplication(GO:0032877) |
0.4 | 1.9 | GO:1904565 | response to 1-oleoyl-sn-glycerol 3-phosphate(GO:1904565) cellular response to 1-oleoyl-sn-glycerol 3-phosphate(GO:1904566) |
0.1 | 1.9 | GO:0070444 | oligodendrocyte progenitor proliferation(GO:0070444) regulation of oligodendrocyte progenitor proliferation(GO:0070445) |
0.5 | 1.6 | GO:0071140 | resolution of recombination intermediates(GO:0071139) resolution of mitotic recombination intermediates(GO:0071140) |
0.1 | 1.5 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
0.1 | 1.5 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.0 | 1.5 | GO:0010923 | negative regulation of phosphatase activity(GO:0010923) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 2.6 | GO:0033593 | BRCA2-MAGE-D1 complex(GO:0033593) |
0.2 | 2.3 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 1.9 | GO:0043198 | dendritic shaft(GO:0043198) |
0.1 | 1.7 | GO:0000800 | lateral element(GO:0000800) |
0.3 | 1.5 | GO:0005971 | ribonucleoside-diphosphate reductase complex(GO:0005971) |
0.3 | 1.5 | GO:0072534 | perineuronal net(GO:0072534) |
0.1 | 1.5 | GO:0031298 | replication fork protection complex(GO:0031298) |
0.1 | 1.4 | GO:0005721 | pericentric heterochromatin(GO:0005721) |
0.4 | 1.3 | GO:0035189 | Rb-E2F complex(GO:0035189) |
0.0 | 1.3 | GO:0071782 | endoplasmic reticulum tubular network(GO:0071782) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | GO:0001047 | core promoter binding(GO:0001047) |
0.4 | 3.8 | GO:0010997 | anaphase-promoting complex binding(GO:0010997) |
0.4 | 2.6 | GO:0010484 | H3 histone acetyltransferase activity(GO:0010484) |
0.1 | 2.1 | GO:0000150 | recombinase activity(GO:0000150) |
0.2 | 1.9 | GO:0035727 | lysophosphatidic acid binding(GO:0035727) |
0.0 | 1.8 | GO:0004386 | helicase activity(GO:0004386) |
0.3 | 1.6 | GO:0036033 | mediator complex binding(GO:0036033) |
0.2 | 1.6 | GO:0008821 | crossover junction endodeoxyribonuclease activity(GO:0008821) |
0.1 | 1.6 | GO:0003688 | DNA replication origin binding(GO:0003688) |
0.3 | 1.5 | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 11.7 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 3.3 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 2.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.9 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.0 | 1.3 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 1.2 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.1 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 1.1 | PID KIT PATHWAY | Signaling events mediated by Stem cell factor receptor (c-Kit) |
0.1 | 1.0 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 1.0 | PID NOTCH PATHWAY | Notch signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.1 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.2 | 4.1 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
0.2 | 2.7 | REACTOME ACTIVATION OF THE PRE REPLICATIVE COMPLEX | Genes involved in Activation of the pre-replicative complex |
0.2 | 2.5 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 2.3 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.4 | 2.1 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
0.0 | 1.6 | REACTOME MEIOSIS | Genes involved in Meiosis |
0.1 | 1.5 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.1 | 1.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
0.2 | 1.2 | REACTOME ASSOCIATION OF LICENSING FACTORS WITH THE PRE REPLICATIVE COMPLEX | Genes involved in Association of licensing factors with the pre-replicative complex |