Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXA13 | hg38_v1_chr7_-_27200083_27200096 | -0.21 | 6.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_+_188974364 Show fit | 2.57 |
ENST00000304636.9
ENST00000317840.9 |
collagen type III alpha 1 chain |
|
chr14_-_91947654 Show fit | 1.63 |
ENST00000342058.9
|
fibulin 5 |
|
chr2_-_224947030 Show fit | 1.42 |
ENST00000409592.7
|
dedicator of cytokinesis 10 |
|
chr2_+_33134579 Show fit | 1.38 |
ENST00000418533.6
|
latent transforming growth factor beta binding protein 1 |
|
chr2_+_33134620 Show fit | 1.34 |
ENST00000402934.5
ENST00000404525.5 ENST00000407925.5 |
latent transforming growth factor beta binding protein 1 |
|
chr3_-_100993409 Show fit | 1.30 |
ENST00000471714.6
|
ABI family member 3 binding protein |
|
chr3_-_100993507 Show fit | 1.27 |
ENST00000284322.10
|
ABI family member 3 binding protein |
|
chr5_-_19988179 Show fit | 1.14 |
ENST00000502796.5
ENST00000382275.6 ENST00000511273.1 |
cadherin 18 |
|
chr12_-_91153149 Show fit | 1.14 |
ENST00000550758.1
|
decorin |
|
chr1_+_78303865 Show fit | 1.09 |
ENST00000370758.5
|
prostaglandin F receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.4 | GO:0034465 | response to carbon monoxide(GO:0034465) |
0.0 | 3.1 | GO:0010811 | positive regulation of cell-substrate adhesion(GO:0010811) |
0.3 | 2.7 | GO:0035583 | sequestering of TGFbeta in extracellular matrix(GO:0035583) |
0.3 | 2.4 | GO:0060414 | aorta smooth muscle tissue morphogenesis(GO:0060414) |
0.1 | 1.6 | GO:0048251 | elastic fiber assembly(GO:0048251) |
0.1 | 1.4 | GO:0002315 | marginal zone B cell differentiation(GO:0002315) |
0.1 | 1.2 | GO:0071492 | cellular response to UV-A(GO:0071492) |
0.1 | 1.1 | GO:0071799 | response to prostaglandin D(GO:0071798) cellular response to prostaglandin D stimulus(GO:0071799) |
0.1 | 1.1 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
0.0 | 0.7 | GO:0060628 | regulation of ER to Golgi vesicle-mediated transport(GO:0060628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0005901 | caveola(GO:0005901) |
0.1 | 2.7 | GO:0043205 | microfibril(GO:0001527) fibril(GO:0043205) |
0.2 | 2.6 | GO:0005583 | fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643) |
0.1 | 2.6 | GO:0005614 | interstitial matrix(GO:0005614) |
0.2 | 1.6 | GO:0071953 | elastic fiber(GO:0071953) |
0.1 | 1.1 | GO:0005589 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.1 | 0.7 | GO:0034680 | integrin alpha10-beta1 complex(GO:0034680) |
0.0 | 0.7 | GO:0031092 | platelet alpha granule membrane(GO:0031092) |
0.0 | 0.6 | GO:0097546 | ciliary base(GO:0097546) |
0.0 | 0.5 | GO:0034451 | centriolar satellite(GO:0034451) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.1 | GO:0005518 | collagen binding(GO:0005518) |
0.3 | 3.4 | GO:0060072 | large conductance calcium-activated potassium channel activity(GO:0060072) |
0.5 | 2.7 | GO:0050436 | microfibril binding(GO:0050436) |
0.2 | 2.6 | GO:0048407 | platelet-derived growth factor binding(GO:0048407) |
0.4 | 1.1 | GO:0004958 | prostaglandin F receptor activity(GO:0004958) |
0.1 | 0.7 | GO:0098639 | collagen binding involved in cell-matrix adhesion(GO:0098639) |
0.0 | 0.6 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 0.5 | GO:0003680 | AT DNA binding(GO:0003680) |
0.1 | 0.4 | GO:0070538 | oleic acid binding(GO:0070538) |
0.0 | 0.4 | GO:0070892 | lipoteichoic acid receptor activity(GO:0070892) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.7 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.9 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 1.1 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
0.0 | 0.7 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
0.0 | 0.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 0.4 | PID THROMBIN PAR4 PATHWAY | PAR4-mediated thrombin signaling events |
0.0 | 0.3 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 1.1 | REACTOME PROSTANOID LIGAND RECEPTORS | Genes involved in Prostanoid ligand receptors |
0.0 | 1.1 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 1.0 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.0 | 0.5 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
0.0 | 0.5 | REACTOME ERK MAPK TARGETS | Genes involved in ERK/MAPK targets |
0.0 | 0.5 | REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS | Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits |
0.0 | 0.4 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.0 | 0.4 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.0 | 0.4 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |