Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXB4 | hg38_v1_chr17_-_48578341_48578356 | 0.86 | 6.2e-03 | Click! |
LHX9 | hg38_v1_chr1_+_197917355_197917379 | -0.65 | 7.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_104085847 Show fit | 2.24 |
ENST00000648076.2
|
collagen type XVII alpha 1 chain |
|
chr2_-_160200251 Show fit | 1.35 |
ENST00000428609.6
ENST00000409967.6 ENST00000283249.7 |
integrin subunit beta 6 |
|
chr2_-_160200289 Show fit | 1.32 |
ENST00000409872.1
|
integrin subunit beta 6 |
|
chr2_-_160200310 Show fit | 1.30 |
ENST00000620391.4
|
integrin subunit beta 6 |
|
chr18_+_31447732 Show fit | 1.20 |
ENST00000257189.5
|
desmoglein 3 |
|
chr1_+_160400543 Show fit | 1.12 |
ENST00000368061.3
|
VANGL planar cell polarity protein 2 |
|
chr8_-_41309434 Show fit | 1.03 |
ENST00000220772.8
|
secreted frizzled related protein 1 |
|
chr5_+_67004618 Show fit | 0.93 |
ENST00000261569.11
ENST00000436277.5 |
microtubule associated serine/threonine kinase family member 4 |
|
chr5_+_140841183 Show fit | 0.81 |
ENST00000378123.4
ENST00000531613.2 |
protocadherin alpha 8 |
|
chr1_+_27934980 Show fit | 0.79 |
ENST00000373894.8
|
sphingomyelin phosphodiesterase acid like 3B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 3.9 | GO:0038044 | transforming growth factor-beta secretion(GO:0038044) |
0.1 | 3.4 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
0.0 | 1.3 | GO:0006359 | regulation of transcription from RNA polymerase III promoter(GO:0006359) |
0.4 | 1.1 | GO:0061341 | non-canonical Wnt signaling pathway involved in heart development(GO:0061341) planar cell polarity pathway involved in heart morphogenesis(GO:0061346) |
0.3 | 1.0 | GO:1904956 | regulation of midbrain dopaminergic neuron differentiation(GO:1904956) |
0.0 | 0.9 | GO:1900087 | positive regulation of G1/S transition of mitotic cell cycle(GO:1900087) |
0.1 | 0.8 | GO:0031339 | negative regulation of vesicle fusion(GO:0031339) |
0.1 | 0.8 | GO:0006685 | sphingomyelin catabolic process(GO:0006685) |
0.1 | 0.7 | GO:0098814 | spontaneous neurotransmitter secretion(GO:0061669) spontaneous synaptic transmission(GO:0098814) |
0.0 | 0.7 | GO:0035589 | G-protein coupled purinergic nucleotide receptor signaling pathway(GO:0035589) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 3.9 | GO:0034685 | integrin alphav-beta6 complex(GO:0034685) |
0.1 | 2.2 | GO:0030056 | hemidesmosome(GO:0030056) |
0.0 | 1.3 | GO:0005666 | DNA-directed RNA polymerase III complex(GO:0005666) |
0.0 | 1.2 | GO:0030057 | desmosome(GO:0030057) |
0.4 | 1.1 | GO:0060187 | cell pole(GO:0060187) |
0.1 | 0.7 | GO:0005610 | laminin-5 complex(GO:0005610) |
0.0 | 0.7 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.0 | 0.6 | GO:0031258 | lamellipodium membrane(GO:0031258) |
0.1 | 0.4 | GO:1990032 | parallel fiber(GO:1990032) |
0.0 | 0.2 | GO:0017109 | glutamate-cysteine ligase complex(GO:0017109) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | GO:0001618 | virus receptor activity(GO:0001618) |
0.0 | 1.5 | GO:0003899 | DNA-directed RNA polymerase activity(GO:0003899) |
0.0 | 1.1 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.1 | 0.9 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
0.1 | 0.8 | GO:0004767 | sphingomyelin phosphodiesterase activity(GO:0004767) |
0.0 | 0.7 | GO:0045028 | G-protein coupled nucleotide receptor activity(GO:0001608) G-protein coupled purinergic nucleotide receptor activity(GO:0045028) |
0.1 | 0.6 | GO:0004583 | dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity(GO:0004583) |
0.1 | 0.6 | GO:0047894 | flavonol 3-sulfotransferase activity(GO:0047894) |
0.0 | 0.6 | GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding(GO:0043325) |
0.0 | 0.6 | GO:0003785 | actin monomer binding(GO:0003785) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.9 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.0 | 2.2 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.1 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.0 | 0.9 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.8 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |
0.0 | 2.2 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 1.2 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.0 | 0.6 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.0 | 0.6 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
0.0 | 0.4 | REACTOME BETA DEFENSINS | Genes involved in Beta defensins |
0.0 | 0.2 | REACTOME NFKB ACTIVATION THROUGH FADD RIP1 PATHWAY MEDIATED BY CASPASE 8 AND10 | Genes involved in NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 |
0.0 | 0.2 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
0.0 | 0.2 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 0.1 | REACTOME IRAK1 RECRUITS IKK COMPLEX | Genes involved in IRAK1 recruits IKK complex |