Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSG00000117595.12 | interferon regulatory factor 6 | |
ENSG00000137265.15 | interferon regulatory factor 4 | |
ENSG00000128604.20 | interferon regulatory factor 5 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
IRF5 | hg38_v1_chr7_+_128937917_128937994 | 0.84 | 9.3e-03 | Click! |
IRF6 | hg38_v1_chr1_-_209806124_209806175 | 0.84 | 9.7e-03 | Click! |
IRF4 | hg38_v1_chr6_+_391743_391759 | -0.49 | 2.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_118264282 Show fit | 3.36 |
ENST00000278937.7
|
myelin protein zero like 2 |
|
chr11_-_118264445 Show fit | 2.64 |
ENST00000438295.2
|
myelin protein zero like 2 |
|
chr4_-_11428868 Show fit | 1.87 |
ENST00000002596.6
|
heparan sulfate-glucosamine 3-sulfotransferase 1 |
|
chr8_+_8701891 Show fit | 1.59 |
ENST00000519106.2
|
claudin 23 |
|
chr1_+_2050387 Show fit | 1.48 |
ENST00000378567.8
|
protein kinase C zeta |
|
chr7_-_140062841 Show fit | 1.39 |
ENST00000263549.8
|
poly(ADP-ribose) polymerase family member 12 |
|
chr12_+_112938523 Show fit | 1.33 |
ENST00000679483.1
ENST00000679493.1 |
2'-5'-oligoadenylate synthetase 3 |
|
chr12_+_112938284 Show fit | 1.22 |
ENST00000681346.1
|
2'-5'-oligoadenylate synthetase 3 |
|
chr6_-_106975309 Show fit | 1.18 |
ENST00000615659.1
|
CD24 molecule |
|
chr17_-_7261092 Show fit | 1.02 |
ENST00000574070.5
|
claudin 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.2 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
0.3 | 3.4 | GO:0060700 | regulation of ribonuclease activity(GO:0060700) |
0.8 | 3.2 | GO:0032597 | B cell receptor transport within lipid bilayer(GO:0032595) B cell receptor transport into membrane raft(GO:0032597) protein transport out of membrane raft(GO:0032599) chemokine receptor transport out of membrane raft(GO:0032600) negative regulation of transforming growth factor beta3 production(GO:0032913) chemokine receptor transport within lipid bilayer(GO:0033606) |
0.1 | 2.9 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.1 | 2.8 | GO:0003373 | dynamin polymerization involved in membrane fission(GO:0003373) dynamin polymerization involved in mitochondrial fission(GO:0003374) |
0.0 | 1.9 | GO:0006024 | glycosaminoglycan biosynthetic process(GO:0006024) |
0.3 | 1.5 | GO:0034344 | type III interferon production(GO:0034343) regulation of type III interferon production(GO:0034344) |
0.2 | 1.3 | GO:2001181 | positive regulation of interleukin-10 secretion(GO:2001181) |
0.1 | 1.0 | GO:0070673 | response to interleukin-18(GO:0070673) |
0.0 | 0.9 | GO:0030206 | chondroitin sulfate biosynthetic process(GO:0030206) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.2 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
0.0 | 2.5 | GO:0005923 | bicellular tight junction(GO:0005923) |
0.1 | 2.0 | GO:0016327 | apicolateral plasma membrane(GO:0016327) |
0.0 | 1.9 | GO:0005796 | Golgi lumen(GO:0005796) |
0.1 | 1.5 | GO:0043203 | axon hillock(GO:0043203) |
0.0 | 1.5 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.3 | 0.9 | GO:0030936 | collagen type XIII trimer(GO:0005600) transmembrane collagen trimer(GO:0030936) |
0.1 | 0.8 | GO:0036056 | filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057) |
0.0 | 0.7 | GO:0090544 | BAF-type complex(GO:0090544) |
0.0 | 0.5 | GO:0033010 | paranodal junction(GO:0033010) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 3.4 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.1 | 3.2 | GO:0030296 | protein tyrosine kinase activator activity(GO:0030296) |
0.3 | 1.9 | GO:0008467 | [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity(GO:0008467) |
0.1 | 1.5 | GO:0043560 | insulin receptor substrate binding(GO:0043560) |
0.1 | 0.9 | GO:0050659 | N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity(GO:0050659) |
0.0 | 0.7 | GO:0005229 | intracellular calcium activated chloride channel activity(GO:0005229) |
0.1 | 0.6 | GO:0015315 | hexose phosphate transmembrane transporter activity(GO:0015119) organophosphate:inorganic phosphate antiporter activity(GO:0015315) hexose-phosphate:inorganic phosphate antiporter activity(GO:0015526) glucose 6-phosphate:inorganic phosphate antiporter activity(GO:0061513) |
0.0 | 0.6 | GO:0016303 | 1-phosphatidylinositol-3-kinase activity(GO:0016303) |
0.1 | 0.5 | GO:0016524 | latrotoxin receptor activity(GO:0016524) |
0.0 | 0.5 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
0.0 | 1.2 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.0 | 1.0 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.0 | 0.8 | PID ERBB NETWORK PATHWAY | ErbB receptor signaling network |
0.0 | 0.7 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.0 | 0.4 | ST GA12 PATHWAY | G alpha 12 Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.9 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 3.2 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.1 | 2.3 | REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION | Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition) |
0.0 | 1.9 | REACTOME HS GAG BIOSYNTHESIS | Genes involved in HS-GAG biosynthesis |
0.0 | 1.3 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.1 | 1.2 | REACTOME NFKB ACTIVATION THROUGH FADD RIP1 PATHWAY MEDIATED BY CASPASE 8 AND10 | Genes involved in NF-kB activation through FADD/RIP-1 pathway mediated by caspase-8 and -10 |
0.0 | 1.2 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.0 | 0.9 | REACTOME CHONDROITIN SULFATE BIOSYNTHESIS | Genes involved in Chondroitin sulfate biosynthesis |
0.0 | 0.6 | REACTOME SIGNALING BY CONSTITUTIVELY ACTIVE EGFR | Genes involved in Signaling by constitutively active EGFR |
0.0 | 0.4 | REACTOME GRB2 SOS PROVIDES LINKAGE TO MAPK SIGNALING FOR INTERGRINS | Genes involved in GRB2:SOS provides linkage to MAPK signaling for Intergrins |