Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MEF2D | hg38_v1_chr1_-_156500723_156500753 | -0.69 | 5.8e-02 | Click! |
MEF2A | hg38_v1_chr15_+_99565921_99565929 | 0.54 | 1.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_111756245 Show fit | 2.33 |
ENST00000447165.6
|
neuronal regeneration related protein |
|
chr3_+_99638475 Show fit | 1.33 |
ENST00000452013.5
ENST00000261037.7 ENST00000652472.1 ENST00000273342.8 ENST00000621757.1 |
collagen type VIII alpha 1 chain |
|
chr1_+_183636065 Show fit | 1.12 |
ENST00000304685.8
|
ral guanine nucleotide dissociation stimulator like 1 |
|
chr5_-_151141631 Show fit | 1.06 |
ENST00000523714.5
ENST00000521749.5 |
annexin A6 |
|
chrX_-_143635081 Show fit | 0.99 |
ENST00000338017.8
|
SLIT and NTRK like family member 4 |
|
chr2_-_144431001 Show fit | 0.99 |
ENST00000636413.1
|
zinc finger E-box binding homeobox 2 |
|
chr2_-_144430934 Show fit | 0.97 |
ENST00000638087.1
ENST00000638007.1 |
zinc finger E-box binding homeobox 2 |
|
chr12_-_91146195 Show fit | 0.96 |
ENST00000548218.1
|
decorin |
|
chr1_+_170664121 Show fit | 0.94 |
ENST00000239461.11
|
paired related homeobox 1 |
|
chr2_-_189179754 Show fit | 0.86 |
ENST00000374866.9
ENST00000618828.1 |
collagen type V alpha 2 chain |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.0 | GO:1902748 | positive regulation of lens fiber cell differentiation(GO:1902748) |
0.1 | 1.4 | GO:0048664 | neuron fate determination(GO:0048664) |
0.0 | 1.2 | GO:0051560 | mitochondrial calcium ion homeostasis(GO:0051560) |
0.2 | 1.0 | GO:0060399 | positive regulation of growth hormone receptor signaling pathway(GO:0060399) |
0.1 | 1.0 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
0.3 | 0.9 | GO:1903225 | negative regulation of endodermal cell differentiation(GO:1903225) |
0.0 | 0.8 | GO:0035987 | endodermal cell differentiation(GO:0035987) |
0.0 | 0.7 | GO:2000651 | positive regulation of sodium ion transmembrane transporter activity(GO:2000651) |
0.0 | 0.6 | GO:0001542 | ovulation from ovarian follicle(GO:0001542) |
0.2 | 0.5 | GO:0030505 | inorganic diphosphate transport(GO:0030505) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.3 | GO:0098645 | network-forming collagen trimer(GO:0098642) collagen network(GO:0098645) |
0.1 | 1.0 | GO:0098647 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.0 | 1.0 | GO:0010369 | chromocenter(GO:0010369) |
0.0 | 1.0 | GO:0005614 | interstitial matrix(GO:0005614) |
0.3 | 0.9 | GO:0005588 | collagen type V trimer(GO:0005588) |
0.2 | 0.9 | GO:0034680 | integrin alpha10-beta1 complex(GO:0034680) |
0.1 | 0.5 | GO:0045160 | myosin I complex(GO:0045160) |
0.0 | 0.5 | GO:0005638 | lamin filament(GO:0005638) |
0.1 | 0.4 | GO:1990578 | perinuclear endoplasmic reticulum membrane(GO:1990578) |
0.0 | 0.4 | GO:0030478 | actin cap(GO:0030478) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.8 | GO:0071837 | HMG box domain binding(GO:0071837) |
0.0 | 1.8 | GO:0001205 | transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205) |
0.2 | 1.2 | GO:0008321 | Ral guanyl-nucleotide exchange factor activity(GO:0008321) |
0.0 | 1.2 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 1.0 | GO:0001968 | fibronectin binding(GO:0001968) |
0.0 | 1.0 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.1 | 0.9 | GO:0098639 | collagen binding involved in cell-matrix adhesion(GO:0098639) |
0.0 | 0.7 | GO:0030742 | GTP-dependent protein binding(GO:0030742) |
0.1 | 0.5 | GO:0035529 | NADH pyrophosphatase activity(GO:0035529) |
0.0 | 0.5 | GO:0045159 | myosin II binding(GO:0045159) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.4 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 1.1 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 1.0 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 0.9 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
0.0 | 0.8 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
0.0 | 0.5 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.0 | 0.4 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 1.0 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.0 | 0.4 | REACTOME IL 7 SIGNALING | Genes involved in Interleukin-7 signaling |
0.0 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.0 | 0.4 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.0 | 0.3 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.0 | 0.3 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 0.2 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |
0.0 | 0.2 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |