Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SP1 | hg38_v1_chr12_+_53380639_53380874, hg38_v1_chr12_+_53380141_53380210 | 0.72 | 4.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_-_44199206 Show fit | 2.01 |
ENST00000589805.1
|
ataxin 7 like 3 |
|
chr17_-_44968263 Show fit | 1.96 |
ENST00000253407.4
|
complement C1q like 1 |
|
chr6_-_31729478 Show fit | 1.84 |
ENST00000436437.2
|
dimethylarginine dimethylaminohydrolase 2 |
|
chr6_-_31729785 Show fit | 1.83 |
ENST00000416410.6
|
dimethylarginine dimethylaminohydrolase 2 |
|
chr1_+_159171607 Show fit | 1.82 |
ENST00000368124.8
ENST00000368125.9 ENST00000416746.1 |
cell adhesion molecule 3 |
|
chr2_+_30146993 Show fit | 1.79 |
ENST00000261353.9
ENST00000402003.7 |
yippee like 5 |
|
chr9_+_128160217 Show fit | 1.72 |
ENST00000372994.2
|
chromosome 9 open reading frame 16 |
|
chr19_+_11346556 Show fit | 1.61 |
ENST00000587531.5
|
coiled-coil domain containing 159 |
|
chr2_+_30146941 Show fit | 1.59 |
ENST00000379520.7
ENST00000379519.7 |
yippee like 5 |
|
chr5_-_111757382 Show fit | 1.53 |
ENST00000453526.6
ENST00000509427.5 |
neuronal regeneration related protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 8.3 | GO:0000052 | citrulline metabolic process(GO:0000052) |
0.2 | 5.1 | GO:0046855 | phosphorylated carbohydrate dephosphorylation(GO:0046838) inositol phosphate dephosphorylation(GO:0046855) |
0.1 | 4.0 | GO:0000291 | nuclear-transcribed mRNA catabolic process, exonucleolytic(GO:0000291) |
0.1 | 4.0 | GO:0043966 | histone H3 acetylation(GO:0043966) |
0.4 | 3.9 | GO:0060355 | positive regulation of cell adhesion molecule production(GO:0060355) |
0.0 | 3.8 | GO:0051352 | negative regulation of ligase activity(GO:0051352) negative regulation of ubiquitin-protein transferase activity(GO:0051444) |
0.5 | 3.7 | GO:2000230 | negative regulation of pancreatic stellate cell proliferation(GO:2000230) |
0.1 | 3.6 | GO:0050690 | regulation of defense response to virus by virus(GO:0050690) |
0.1 | 3.5 | GO:0070979 | protein K11-linked ubiquitination(GO:0070979) |
0.0 | 3.4 | GO:0042147 | retrograde transport, endosome to Golgi(GO:0042147) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.7 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.1 | 7.9 | GO:0000118 | histone deacetylase complex(GO:0000118) |
0.1 | 5.8 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.0 | 5.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 5.4 | GO:0030027 | lamellipodium(GO:0030027) |
0.0 | 5.2 | GO:0016605 | PML body(GO:0016605) |
0.1 | 4.6 | GO:0097517 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.1 | 4.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.1 | 4.3 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 4.1 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.3 | GO:0019003 | GDP binding(GO:0019003) |
0.9 | 7.5 | GO:0016403 | dimethylargininase activity(GO:0016403) |
0.0 | 7.5 | GO:0003924 | GTPase activity(GO:0003924) |
0.1 | 4.9 | GO:0004407 | histone deacetylase activity(GO:0004407) |
0.1 | 4.5 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.0 | 4.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.4 | 3.9 | GO:0050692 | DBD domain binding(GO:0050692) |
0.1 | 3.9 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.0 | 3.6 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.0 | 3.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.5 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
0.1 | 7.5 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 5.3 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 5.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.0 | 4.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 4.1 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.1 | 3.6 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 3.3 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.1 | 3.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.1 | 3.1 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 7.1 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.2 | 6.3 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.1 | 5.2 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 5.1 | REACTOME DNA REPAIR | Genes involved in DNA Repair |
0.1 | 4.0 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |
0.0 | 4.0 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.1 | 3.9 | REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES | Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates |
0.2 | 3.7 | REACTOME ROLE OF DCC IN REGULATING APOPTOSIS | Genes involved in Role of DCC in regulating apoptosis |
0.1 | 3.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |