Epithelial-Mesenchymal Transition, human (Scheel, 2011)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
PML | hg38_v1_chr15_+_73994777_73994803 | -0.80 | 1.8e-02 | Click! |
SP4 | hg38_v1_chr7_+_21428184_21428227 | -0.70 | 5.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_98268186 Show fit | 1.65 |
ENST00000260702.4
|
lysyl oxidase like 4 |
|
chr21_+_46098102 Show fit | 1.21 |
ENST00000300527.9
ENST00000310645.9 |
collagen type VI alpha 2 chain |
|
chr10_-_15371225 Show fit | 1.04 |
ENST00000378116.9
|
family with sequence similarity 171 member A1 |
|
chr13_+_112894328 Show fit | 1.03 |
ENST00000375608.7
|
MCF.2 cell line derived transforming sequence like |
|
chr14_-_29927596 Show fit | 1.00 |
ENST00000415220.6
|
protein kinase D1 |
|
chr14_-_29927473 Show fit | 0.93 |
ENST00000616995.4
|
protein kinase D1 |
|
chr7_-_131556602 Show fit | 0.91 |
ENST00000322985.9
ENST00000378555.8 |
podocalyxin like |
|
chrX_+_9465011 Show fit | 0.88 |
ENST00000645353.2
|
transducin beta like 1 X-linked |
|
chr2_+_11155498 Show fit | 0.84 |
ENST00000402361.5
ENST00000428481.1 |
solute carrier family 66 member 3 |
|
chr4_+_144646145 Show fit | 0.80 |
ENST00000296575.8
ENST00000434550.2 |
hedgehog interacting protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.4 | GO:0034465 | response to carbon monoxide(GO:0034465) |
0.3 | 2.5 | GO:0089700 | protein kinase D signaling(GO:0089700) |
0.1 | 2.2 | GO:0070208 | protein heterotrimerization(GO:0070208) |
0.0 | 1.9 | GO:0030206 | chondroitin sulfate biosynthetic process(GO:0030206) |
0.0 | 1.8 | GO:0048009 | insulin-like growth factor receptor signaling pathway(GO:0048009) |
0.2 | 1.7 | GO:2000230 | negative regulation of pancreatic stellate cell proliferation(GO:2000230) |
0.0 | 1.7 | GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0007157) |
0.1 | 1.6 | GO:0070445 | oligodendrocyte progenitor proliferation(GO:0070444) regulation of oligodendrocyte progenitor proliferation(GO:0070445) |
0.1 | 1.6 | GO:0031581 | hemidesmosome assembly(GO:0031581) |
0.0 | 1.6 | GO:0071711 | basement membrane organization(GO:0071711) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.9 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.0 | 8.5 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.0 | 5.6 | GO:0005901 | caveola(GO:0005901) |
0.0 | 4.2 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.1 | 3.3 | GO:0030173 | integral component of Golgi membrane(GO:0030173) |
0.0 | 3.0 | GO:0005811 | lipid particle(GO:0005811) |
0.0 | 2.3 | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane(GO:0033116) |
0.0 | 1.9 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.1 | 1.8 | GO:1990023 | mitotic spindle midzone(GO:1990023) |
0.0 | 1.8 | GO:0043202 | lysosomal lumen(GO:0043202) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.4 | GO:0060072 | large conductance calcium-activated potassium channel activity(GO:0060072) |
0.0 | 3.4 | GO:0016887 | ATPase activity(GO:0016887) |
0.1 | 2.1 | GO:0030506 | ankyrin binding(GO:0030506) |
0.0 | 2.0 | GO:0050681 | androgen receptor binding(GO:0050681) |
0.0 | 1.9 | GO:0005518 | collagen binding(GO:0005518) |
0.1 | 1.8 | GO:0102391 | decanoate--CoA ligase activity(GO:0102391) |
0.1 | 1.7 | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor(GO:0016641) |
0.1 | 1.6 | GO:0004697 | protein kinase C activity(GO:0004697) |
0.1 | 1.6 | GO:0000030 | mannosyltransferase activity(GO:0000030) |
0.0 | 1.6 | GO:0008094 | DNA-dependent ATPase activity(GO:0008094) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 3.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 2.7 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.0 | 2.5 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 1.8 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 1.6 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 1.6 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 1.5 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.0 | 1.5 | PID LYSOPHOSPHOLIPID PATHWAY | LPA receptor mediated events |
0.0 | 1.3 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.0 | 3.9 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.0 | 3.5 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |
0.0 | 2.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
0.1 | 2.2 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.0 | 2.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.0 | 1.8 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.1 | 1.7 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 1.7 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.0 | 1.6 | REACTOME ION TRANSPORT BY P TYPE ATPASES | Genes involved in Ion transport by P-type ATPases |