hg38_v1_chr1_+_159171607_159171759	1.12075	BRCA1	ENST00000368124.8|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000368125.9|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000416746.1|CADM3|ENSG00000162706.13|cell adhesion molecule 3
hg38_v1_chr14_-_59630806_59630820	0.531324	BRCA1	ENST00000342503.8|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr14_-_59630582_59630685	0.52041	BRCA1	ENST00000395090.5|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr9_-_92424427_92424480	0.449002	BRCA1	ENST00000375550.5|OMD|ENSG00000127083.8|osteomodulin
hg38_v1_chr20_-_35438218_35438266	0.431905	BRCA1	ENST00000374369.8|GDF5|ENSG00000125965.9|growth differentiation factor 5
hg38_v1_chr11_-_27700472_27700494	0.321622	BRCA1	ENST00000418212.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor	ENST00000533246.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor
hg38_v1_chr11_-_27700447_27700461	0.31932	BRCA1	ENST00000356660.9|BDNF|ENSG00000176697.20|brain derived neurotrophic factor
hg38_v1_chr5_-_124746630_124746673	0.275435	BRCA1	ENST00000513986.2|ZNF608|ENSG00000168916.16|zinc finger protein 608
hg38_v1_chr7_-_23470469_23470499	0.243581	BRCA1	ENST00000258729.8|IGF2BP3|ENSG00000136231.14|insulin like growth factor 2 mRNA binding protein 3
hg38_v1_chrX_-_143635081_143635204	0.200219	BRCA1	ENST00000338017.8|SLITRK4|ENSG00000179542.16|SLIT and NTRK like family member 4
hg38_v1_chrX_+_10156960_10156992	0.185057	BRCA1	ENST00000380833.9|CLCN4|ENSG00000073464.13|chloride voltage-gated channel 4
hg38_v1_chr3_-_127736329_127736380	0.178337	BRCA1	ENST00000398101.7|MGLL|ENSG00000074416.15|monoglyceride lipase
hg38_v1_chr7_+_100119607_100119698	0.16034	BRCA1	ENST00000262932.5|CNPY4|ENSG00000166997.8|canopy FGF signaling regulator 4
hg38_v1_chr2_-_144517663_144518026	0.159591	BRCA1	ENST00000427902.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000462355.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000470879.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000409487.7|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000435831.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000630572.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2
hg38_v1_chr2_-_151261839_151261870	0.154844	BRCA1	ENST00000331426.6|RBM43|ENSG00000184898.7|RNA binding motif protein 43
hg38_v1_chr21_+_44646414_44646414	0.152101	BRCA1	ENST00000334670.9|KRTAP10-11|ENSG00000243489.4|keratin associated protein 10-11
hg38_v1_chr14_+_88385643_88385711	0.137505	BRCA1	ENST00000393545.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000356583.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000555401.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000553885.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7
hg38_v1_chr14_+_88385714_88385819	0.133266	BRCA1	ENST00000045347.11|SPATA7|ENSG00000042317.17|spermatogenesis associated 7
hg38_v1_chrX_-_71068384_71068448	0.131068	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.12|sorting nexin 12	ENST00000622259.4|SNX12|ENSG00000147164.12|sorting nexin 12
hg38_v1_chr19_-_12801787_12801807	0.122314	BRCA1	ENST00000334482.9|PRDX2|ENSG00000167815.12|peroxiredoxin 2	ENST00000301522.3|PRDX2|ENSG00000167815.12|peroxiredoxin 2
hg38_v1_chr11_+_101914997_101915036	0.108101	BRCA1	ENST00000263468.13|CEP126|ENSG00000110318.15|centrosomal protein 126
hg38_v1_chr20_+_58907981_58908019	0.104227	BRCA1	ENST00000656419.1|GNAS|ENSG00000087460.29|GNAS complex locus
hg38_v1_chr5_+_154941063_154941114	0.103682	BRCA1	ENST00000523037.6|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000265229.12|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000439747.7|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000522038.5|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22
hg38_v1_chr12_-_80937918_80937954	0.0990359	BRCA1	ENST00000552864.6|LIN7A|ENSG00000111052.8|lin-7 homolog A, crumbs cell polarity complex component
hg38_v1_chr1_-_160262522_160262533	0.0927126	BRCA1	ENST00000440682.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr1_-_160262501_160262514	0.0918025	BRCA1	ENST00000447377.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chrX_-_71068311_71068383	0.0898186	BRCA1	ENST00000374274.8|SNX12|ENSG00000147164.12|sorting nexin 12
hg38_v1_chr6_+_16129077_16129171	0.0780616	BRCA1	ENST00000356840.8|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein	ENST00000349606.4|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein
hg38_v1_chr2_+_108378176_108378193	0.0738361	BRCA1	ENST00000409309.3|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr10_+_100535927_100535957	0.0731186	BRCA1	ENST00000299163.7|HIF1AN|ENSG00000166135.14|hypoxia inducible factor 1 subunit alpha inhibitor
hg38_v1_chr5_+_140700437_140700457	0.0712849	BRCA1	ENST00000274712.8|ZMAT2|ENSG00000146007.11|zinc finger matrin-type 2
hg38_v1_chr19_-_37172432_37172440	0.06873	BRCA1	ENST00000392157.2|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr11_+_73308237_73308317	0.067033	BRCA1	ENST00000263674.4|ARHGEF17|ENSG00000110237.5|Rho guanine nucleotide exchange factor 17
hg38_v1_chr12_-_122395422_122395436	0.0652917	BRCA1	ENST00000540304.6|CLIP1|ENSG00000130779.22|CAP-Gly domain containing linker protein 1
hg38_v1_chr19_-_37172670_37172741	0.0617304	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000292841.10|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000356958.8|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr1_+_84181630_84181667	0.0606968	BRCA1	ENST00000610457.1|PRKACB|ENSG00000142875.19|protein kinase cAMP-activated catalytic subunit beta
hg38_v1_chr3_-_177196451_177196489	0.0560738	BRCA1	ENST00000430069.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000630796.2|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000428970.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1
hg38_v1_chr13_+_29428709_29428726	0.0554478	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.22|microtubule associated scaffold protein 2
hg38_v1_chr2_+_108377947_108377977	0.0552247	BRCA1	ENST00000272452.7|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr19_-_55580829_55580882	0.0548298	BRCA1	ENST00000592239.1|ZNF579|ENSG00000218891.5|zinc finger protein 579	ENST00000325421.7|ZNF579|ENSG00000218891.5|zinc finger protein 579
hg38_v1_chr6_-_43014254_43014293	0.0521225	BRCA1	ENST00000642748.1|MEA1|ENSG00000124733.5|male-enhanced antigen 1
hg38_v1_chr11_+_33258304_33258384	0.0507918	BRCA1	ENST00000531504.5|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3	ENST00000456517.2|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3
hg38_v1_chr19_-_47555856_47555856	0.0505761	BRCA1	ENST00000391901.7|ZNF541|ENSG00000118156.12|zinc finger protein 541	ENST00000314121.8|ZNF541|ENSG00000118156.12|zinc finger protein 541
hg38_v1_chr19_+_46347063_46347108	0.0483312	BRCA1	ENST00000012443.9|PPP5C|ENSG00000011485.15|protein phosphatase 5 catalytic subunit	ENST00000391919.1|PPP5C|ENSG00000011485.15|protein phosphatase 5 catalytic subunit
hg38_v1_chr19_+_47130782_47130900	0.0480695	BRCA1	ENST00000597808.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000413379.7|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000600706.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000270225.12|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000598840.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000600753.1|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000392776.3|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1
hg38_v1_chr1_-_160262407_160262494	0.0477999	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000610139.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000475733.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000407642.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000368073.7|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000326837.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr13_-_30464234_30464372	0.0461261	BRCA1	ENST00000399489.5|HMGB1|ENSG00000189403.15|high mobility group box 1	ENST00000339872.8|HMGB1|ENSG00000189403.15|high mobility group box 1
hg38_v1_chr19_-_39834127_39834201	0.0448087	BRCA1	ENST00000601972.1|DYRK1B|ENSG00000105204.14|dual specificity tyrosine phosphorylation regulated kinase 1B	ENST00000430012.6|DYRK1B|ENSG00000105204.14|dual specificity tyrosine phosphorylation regulated kinase 1B	ENST00000323039.10|DYRK1B|ENSG00000105204.14|dual specificity tyrosine phosphorylation regulated kinase 1B	ENST00000348817.7|DYRK1B|ENSG00000105204.14|dual specificity tyrosine phosphorylation regulated kinase 1B
hg38_v1_chr17_+_38752731_38752799	0.0418253	BRCA1	ENST00000619426.5|PSMB3|ENSG00000277791.5|proteasome 20S subunit beta 3	ENST00000610434.4|PSMB3|ENSG00000277791.5|proteasome 20S subunit beta 3
hg38_v1_chr18_-_26091175_26091226	0.0413513	BRCA1	ENST00000579061.5|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex	ENST00000542420.6|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex
hg38_v1_chr14_+_22040576_22040601	0.0384645	BRCA1	ENST00000390448.3|TRAV20|ENSG00000211800.3|T cell receptor alpha variable 20
hg38_v1_chr20_-_49913693_49913739	0.0381002	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.11|spermatogenesis associated 2
hg38_v1_chr7_-_100119323_100119372	0.0374684	BRCA1	ENST00000523306.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000344095.8|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000417349.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000493322.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000520135.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000460673.2|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000453269.7|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452041.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452438.6|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000451699.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6
hg38_v1_chr13_-_49444004_49444076	0.0373074	BRCA1	ENST00000410043.5|CAB39L|ENSG00000102547.19|calcium binding protein 39 like	ENST00000409308.6|CAB39L|ENSG00000102547.19|calcium binding protein 39 like
hg38_v1_chr2_+_135741814_135741904	0.0367425	BRCA1	ENST00000272638.14|UBXN4|ENSG00000144224.17|UBX domain protein 4
hg38_v1_chr4_-_184649436_184649509	0.0350052	BRCA1	ENST00000308394.9|CASP3|ENSG00000164305.19|caspase 3	ENST00000517513.5|CASP3|ENSG00000164305.19|caspase 3	ENST00000447121.2|CASP3|ENSG00000164305.19|caspase 3	ENST00000393588.8|CASP3|ENSG00000164305.19|caspase 3	ENST00000523916.5|CASP3|ENSG00000164305.19|caspase 3
hg38_v1_chr2_-_24972032_24972094	0.0317532	BRCA1	ENST00000534855.5|DNAJC27|ENSG00000115137.12|DnaJ heat shock protein family (Hsp40) member C27
hg38_v1_chr3_-_142448028_142448047	0.0314151	BRCA1	ENST00000392981.7|XRN1|ENSG00000114127.11|5'-3' exoribonuclease 1
hg38_v1_chr6_+_96563117_96563145	0.02968	BRCA1	ENST00000450218.6|FHL5|ENSG00000112214.11|four and a half LIM domains 5
hg38_v1_chr2_-_49974083_49974123	0.0291292	BRCA1	ENST00000636345.1|NRXN1|ENSG00000179915.24|neurexin 1
hg38_v1_chr3_-_142448060_142448074	0.0284462	BRCA1	ENST00000264951.8|XRN1|ENSG00000114127.11|5'-3' exoribonuclease 1
hg38_v1_chr5_+_146203544_146203587	0.0278772	BRCA1	ENST00000506502.2|ENSG00000275740.1|ENSG00000275740.1|novel readthrough transcript
hg38_v1_chr11_-_72112750_72112780	0.0252968	BRCA1	ENST00000545680.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000543587.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000538393.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535234.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000227618.8|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535503.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15
hg38_v1_chr1_-_160262540_160262565	0.0242075	BRCA1	ENST00000368074.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr10_-_24706622_24706653	0.0237145	BRCA1	ENST00000680286.1|ARHGAP21|ENSG00000107863.19|Rho GTPase activating protein 21
hg38_v1_chr4_+_109827963_109827981	0.0225936	BRCA1	ENST00000317735.7|RRH|ENSG00000180245.7|retinal pigment epithelium-derived rhodopsin homolog
hg38_v1_chr16_-_740934_740978	0.0222931	BRCA1	ENST00000540986.5|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr16_-_740980_741021	0.0188788	BRCA1	ENST00000251588.7|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr10_+_120851341_120851413	0.0183901	BRCA1	ENST00000263461.11|WDR11|ENSG00000120008.16|WD repeat domain 11
hg38_v1_chr2_-_24971900_24971971	0.0178898	BRCA1	ENST00000264711.7|DNAJC27|ENSG00000115137.12|DnaJ heat shock protein family (Hsp40) member C27
hg38_v1_chr6_-_158999748_158999839	0.0161521	BRCA1	ENST00000449822.5|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr10_+_90871946_90871984	0.0148357	BRCA1	ENST00000413330.5|RPP30|ENSG00000148688.14|ribonuclease P/MRP subunit p30	ENST00000371703.8|RPP30|ENSG00000148688.14|ribonuclease P/MRP subunit p30	ENST00000277882.7|RPP30|ENSG00000148688.14|ribonuclease P/MRP subunit p30
hg38_v1_chr2_+_203014721_203014770	0.0135657	BRCA1	ENST00000683091.1|NBEAL1|ENSG00000144426.19|neurobeachin like 1
hg38_v1_chr1_-_17045219_17045261	0.0127539	BRCA1	ENST00000491274.5|SDHB|ENSG00000117118.10|succinate dehydrogenase complex iron sulfur subunit B
hg38_v1_chr10_+_47322450_47322459	0.0123728	BRCA1	ENST00000581492.3|GDF2|ENSG00000263761.3|growth differentiation factor 2
hg38_v1_chr5_+_146203593_146203617	0.011402	BRCA1	ENST00000265271.7|RBM27|ENSG00000091009.8|RNA binding motif protein 27
hg38_v1_chr1_-_41242106_41242151	0.0112612	BRCA1	ENST00000337495.9|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372597.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372596.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1
hg38_v1_chr1_+_171557845_171557955	0.0107606	BRCA1	ENST00000644916.1|PRRC2C|ENSG00000117523.17|proline rich coiled-coil 2C
hg38_v1_chr19_+_48469354_48469433	0.00909103	BRCA1	ENST00000452733.7|CYTH2|ENSG00000105443.15|cytohesin 2	ENST00000641098.1|CYTH2|ENSG00000105443.15|cytohesin 2
hg38_v1_chr9_-_83978429_83978452	0.00678667	BRCA1	ENST00000351839.7|HNRNPK|ENSG00000165119.21|heterogeneous nuclear ribonucleoprotein K
hg38_v1_chr2_+_203014842_203014888	0.00329632	BRCA1	ENST00000683969.1|NBEAL1|ENSG00000144426.19|neurobeachin like 1	ENST00000449802.5|NBEAL1|ENSG00000144426.19|neurobeachin like 1
hg38_v1_chr14_+_20190896_20190896	0.00315702	BRCA1	ENST00000641879.2|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2	ENST00000641682.1|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2
hg38_v1_chr11_-_61430008_61430031	0.00158699	BRCA1	ENST00000394888.8|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr10_-_100529854_100530000	0.000550568	BRCA1	ENST00000370320.4|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000299166.9|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000370322.5|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8
