hg38_v1_chr18_+_23949847_23949893	4.09887	GLI3	ENST00000588004.1|LAMA3|ENSG00000053747.17|laminin subunit alpha 3
hg38_v1_chr19_-_50953063_50953066	2.16365	GLI3	ENST00000391809.6|KLK5|ENSG00000167754.13|kallikrein related peptidase 5
hg38_v1_chr19_-_50953093_50953108	2.1482	GLI3	ENST00000593428.5|KLK5|ENSG00000167754.13|kallikrein related peptidase 5
hg38_v1_chr1_-_161021096_161021159	2.13872	GLI3	ENST00000537746.1|F11R|ENSG00000158769.18|F11 receptor	ENST00000368026.11|F11R|ENSG00000158769.18|F11 receptor
hg38_v1_chr6_+_125219804_125219845	2.12916	GLI3	ENST00000524679.1|TPD52L1|ENSG00000111907.21|TPD52 like 1
hg38_v1_chr12_-_52493250_52493265	2.06999	GLI3	ENST00000330722.7|KRT6A|ENSG00000205420.11|keratin 6A
hg38_v1_chr19_-_50952942_50953044	2.01323	GLI3	ENST00000594846.1|KLK5|ENSG00000167754.13|kallikrein related peptidase 5	ENST00000336334.8|KLK5|ENSG00000167754.13|kallikrein related peptidase 5
hg38_v1_chr6_-_106975309_106975350	1.96056	GLI3	ENST00000615659.1|CD24|ENSG00000272398.6|CD24 molecule
hg38_v1_chr1_+_183186238_183186271	1.91948	GLI3	ENST00000493293.5|LAMC2|ENSG00000058085.15|laminin subunit gamma 2	ENST00000264144.5|LAMC2|ENSG00000058085.15|laminin subunit gamma 2
hg38_v1_chr12_-_52473798_52473812	1.77926	GLI3	ENST00000252250.7|KRT6C|ENSG00000170465.10|keratin 6C
hg38_v1_chr6_-_106974721_106974740	1.76239	GLI3	ENST00000606017.2|CD24|ENSG00000272398.6|CD24 molecule	ENST00000620405.1|CD24|ENSG00000272398.6|CD24 molecule
hg38_v1_chr19_-_35501878_35501913	1.72839	GLI3	ENST00000593342.5|DMKN|ENSG00000161249.21|dermokine	ENST00000601650.1|DMKN|ENSG00000161249.21|dermokine	ENST00000408915.6|DMKN|ENSG00000161249.21|dermokine
hg38_v1_chr13_-_20232303_20232365	1.56239	GLI3	ENST00000400065.7|GJB6|ENSG00000121742.19|gap junction protein beta 6	ENST00000643121.1|GJB6|ENSG00000121742.19|gap junction protein beta 6	ENST00000647029.1|GJB6|ENSG00000121742.19|gap junction protein beta 6	ENST00000643211.1|GJB6|ENSG00000121742.19|gap junction protein beta 6	ENST00000400066.8|GJB6|ENSG00000121742.19|gap junction protein beta 6	ENST00000644283.1|GJB6|ENSG00000121742.19|gap junction protein beta 6
hg38_v1_chr19_+_44809089_44809121	1.55432	GLI3	ENST00000270233.12|BCAM|ENSG00000187244.12|basal cell adhesion molecule (Lutheran blood group)	ENST00000591520.6|BCAM|ENSG00000187244.12|basal cell adhesion molecule (Lutheran blood group)
hg38_v1_chr6_-_106975452_106975467	1.5351	GLI3	ENST00000619869.1|CD24|ENSG00000272398.6|CD24 molecule	ENST00000619133.4|CD24|ENSG00000272398.6|CD24 molecule
hg38_v1_chr1_+_43933794_43933846	1.48435	GLI3	ENST00000372359.10|ARTN|ENSG00000117407.17|artemin	ENST00000498139.6|ARTN|ENSG00000117407.17|artemin	ENST00000491846.5|ARTN|ENSG00000117407.17|artemin
hg38_v1_chr17_-_41521719_41521786	1.4819	GLI3	ENST00000393976.6|KRT15|ENSG00000171346.16|keratin 15
hg38_v1_chr12_-_52452139_52452154	1.47182	GLI3	ENST00000252252.4|KRT6B|ENSG00000185479.6|keratin 6B
hg38_v1_chr11_+_32829903_32829939	1.27947	GLI3	ENST00000257836.4|PRRG4|ENSG00000135378.4|proline rich and Gla domain 4
hg38_v1_chr20_+_46008900_46008914	1.21109	GLI3	ENST00000372330.3|MMP9|ENSG00000100985.7|matrix metallopeptidase 9
hg38_v1_chr20_+_59628609_59628658	1.20095	GLI3	ENST00000541461.5|PHACTR3|ENSG00000087495.17|phosphatase and actin regulator 3
hg38_v1_chr10_+_80413817_80413850	1.16891	GLI3	ENST00000372187.9|PRXL2A|ENSG00000122378.14|peroxiredoxin like 2A
hg38_v1_chr14_-_94390650_94390663	1.15038	GLI3	ENST00000449399.7|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000404814.8|SERPINA1|ENSG00000197249.14|serpin family A member 1
hg38_v1_chr15_+_40252888_40253184	1.07927	GLI3	ENST00000559139.5|PAK6|ENSG00000137843.12|p21 (RAC1) activated kinase 6	ENST00000560669.5|PAK6|ENSG00000137843.12|p21 (RAC1) activated kinase 6	ENST00000542403.3|PAK6|ENSG00000137843.12|p21 (RAC1) activated kinase 6
hg38_v1_chr1_+_233327710_233327747	1.06329	GLI3	ENST00000366624.8|MAP3K21|ENSG00000143674.11|mitogen-activated protein kinase kinase kinase 21
hg38_v1_chr13_-_20192928_20192944	1.00204	GLI3	ENST00000382848.5|GJB2|ENSG00000165474.8|gap junction protein beta 2
hg38_v1_chr8_-_22133356_22133395	1.00192	GLI3	ENST00000680789.1|HR|ENSG00000168453.16|HR lysine demethylase and nuclear receptor corepressor
hg38_v1_chr11_-_120120880_120120901	0.995278	GLI3	ENST00000526881.1|TRIM29|ENSG00000137699.17|tripartite motif containing 29
hg38_v1_chr11_+_70085413_70085459	0.991047	GLI3	ENST00000316296.9|ANO1|ENSG00000131620.17|anoctamin 1	ENST00000530676.5|ANO1|ENSG00000131620.17|anoctamin 1
hg38_v1_chr19_+_44809053_44809075	0.986585	GLI3	ENST00000611077.5|BCAM|ENSG00000187244.12|basal cell adhesion molecule (Lutheran blood group)
hg38_v1_chr19_-_51019699_51019716	0.986143	GLI3	ENST00000358789.8|KLK10|ENSG00000129451.12|kallikrein related peptidase 10
hg38_v1_chr4_-_89837106_89837310	0.978642	GLI3	ENST00000394986.5|SNCA|ENSG00000145335.17|synuclein alpha	ENST00000394991.8|SNCA|ENSG00000145335.17|synuclein alpha	ENST00000506244.5|SNCA|ENSG00000145335.17|synuclein alpha	ENST00000394989.6|SNCA|ENSG00000145335.17|synuclein alpha	ENST00000673902.1|SNCA|ENSG00000145335.17|synuclein alpha	ENST00000674129.1|SNCA|ENSG00000145335.17|synuclein alpha
hg38_v1_chr7_-_41703062_41703097	0.957686	GLI3	ENST00000242208.5|INHBA|ENSG00000122641.11|inhibin subunit beta A
hg38_v1_chr8_+_123182635_123182681	0.928092	GLI3	ENST00000276699.10|FAM83A|ENSG00000147689.16|family with sequence similarity 83 member A	ENST00000522648.5|FAM83A|ENSG00000147689.16|family with sequence similarity 83 member A
hg38_v1_chr2_+_219627622_219627648	0.922298	GLI3	ENST00000358055.8|SLC4A3|ENSG00000114923.17|solute carrier family 4 member 3
hg38_v1_chr1_+_2050387_2050450	0.890769	GLI3	ENST00000378567.8|PRKCZ|ENSG00000067606.17|protein kinase C zeta
hg38_v1_chr20_+_63696643_63696660	0.886927	GLI3	ENST00000369996.3|TNFRSF6B|ENSG00000243509.6|TNF receptor superfamily member 6b
hg38_v1_chr14_+_61321571_61321587	0.883803	GLI3	ENST00000332981.11|PRKCH|ENSG00000027075.16|protein kinase C eta
hg38_v1_chr17_-_35795592_35795707	0.8584	GLI3	ENST00000615136.4|MMP28|ENSG00000271447.6|matrix metallopeptidase 28	ENST00000605424.6|MMP28|ENSG00000271447.6|matrix metallopeptidase 28	ENST00000612672.1|MMP28|ENSG00000271447.6|matrix metallopeptidase 28
hg38_v1_chr7_+_69598465_69598486	0.845518	GLI3	ENST00000342771.10|AUTS2|ENSG00000158321.18|activator of transcription and developmental regulator AUTS2
hg38_v1_chr16_+_57620077_57620108	0.842531	GLI3	ENST00000567835.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000569372.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000563548.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000562003.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1
hg38_v1_chr19_+_35115787_35115866	0.840304	GLI3	ENST00000604404.6|FXYD3|ENSG00000089356.19|FXYD domain containing ion transport regulator 3
hg38_v1_chr16_+_57619942_57620056	0.837443	GLI3	ENST00000568908.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000568909.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000566778.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1	ENST00000561988.5|ADGRG1|ENSG00000205336.14|adhesion G protein-coupled receptor G1
hg38_v1_chr1_+_26543106_26543147	0.825494	GLI3	ENST00000530003.5|RPS6KA1|ENSG00000117676.14|ribosomal protein S6 kinase A1
hg38_v1_chr2_+_219627394_219627428	0.817671	GLI3	ENST00000373760.6|SLC4A3|ENSG00000114923.17|solute carrier family 4 member 3
hg38_v1_chr14_-_94390667_94390693	0.816747	GLI3	ENST00000557492.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000355814.8|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000437397.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000448921.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000393088.8|SERPINA1|ENSG00000197249.14|serpin family A member 1
hg38_v1_chr15_-_82952683_82952743	0.813339	GLI3	ENST00000450735.7|HOMER2|ENSG00000103942.13|homer scaffold protein 2	ENST00000304231.12|HOMER2|ENSG00000103942.13|homer scaffold protein 2
hg38_v1_chr6_+_125153846_125153900	0.81034	GLI3	ENST00000528193.5|TPD52L1|ENSG00000111907.21|TPD52 like 1
hg38_v1_chr11_+_76782250_76782313	0.79737	GLI3	ENST00000533752.1|TSKU|ENSG00000182704.8|tsukushi, small leucine rich proteoglycan	ENST00000612930.1|TSKU|ENSG00000182704.8|tsukushi, small leucine rich proteoglycan
hg38_v1_chr15_+_81299416_81299439	0.784954	GLI3	ENST00000558332.3|IL16|ENSG00000172349.18|interleukin 16
hg38_v1_chr6_-_32816910_32817062	0.78317	GLI3	ENST00000447394.1|HLA-DOB|ENSG00000241106.8|major histocompatibility complex, class II, DO beta	ENST00000438763.7|HLA-DOB|ENSG00000241106.8|major histocompatibility complex, class II, DO beta
hg38_v1_chr8_+_22059342_22059367	0.773499	GLI3	ENST00000415253.5|DMTN|ENSG00000158856.18|dematin actin binding protein
hg38_v1_chr3_-_139539679_139539829	0.771053	GLI3	ENST00000483943.6|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000672186.1|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000232219.6|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000617459.4|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000492918.1|RBP1|ENSG00000114115.10|retinol binding protein 1
hg38_v1_chr14_-_94390614_94390647	0.76373	GLI3	ENST00000553327.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000556955.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000557118.5|SERPINA1|ENSG00000197249.14|serpin family A member 1	ENST00000440909.5|SERPINA1|ENSG00000197249.14|serpin family A member 1
hg38_v1_chr12_-_54385727_54385785	0.762512	GLI3	ENST00000551109.5|ZNF385A|ENSG00000161642.18|zinc finger protein 385A	ENST00000546970.5|ZNF385A|ENSG00000161642.18|zinc finger protein 385A
hg38_v1_chr16_+_67199104_67199158	0.762167	GLI3	ENST00000360833.6|ELMO3|ENSG00000102890.16|engulfment and cell motility 3	ENST00000652269.1|ELMO3|ENSG00000102890.16|engulfment and cell motility 3	ENST00000393997.8|ELMO3|ENSG00000102890.16|engulfment and cell motility 3
hg38_v1_chr15_+_40239420_40239520	0.751456	GLI3	ENST00000560346.5|PAK6|ENSG00000137843.12|p21 (RAC1) activated kinase 6
hg38_v1_chr7_-_954666_954697	0.751114	GLI3	ENST00000265846.10|ADAP1|ENSG00000105963.15|ArfGAP with dual PH domains 1	ENST00000649206.1|ADAP1|ENSG00000105963.15|ArfGAP with dual PH domains 1
hg38_v1_chr11_-_120123026_120123070	0.74952	GLI3	ENST00000533302.5|TRIM29|ENSG00000137699.17|tripartite motif containing 29
hg38_v1_chr6_-_46735351_46735409	0.742084	GLI3	ENST00000274793.12|PLA2G7|ENSG00000146070.17|phospholipase A2 group VII
hg38_v1_chr1_+_156153568_156153607	0.737186	GLI3	ENST00000368284.5|SEMA4A|ENSG00000196189.13|semaphorin 4A	ENST00000368286.6|SEMA4A|ENSG00000196189.13|semaphorin 4A	ENST00000368285.8|SEMA4A|ENSG00000196189.13|semaphorin 4A	ENST00000438830.5|SEMA4A|ENSG00000196189.13|semaphorin 4A
hg38_v1_chr4_-_89837076_89837103	0.722131	GLI3	ENST00000506691.1|SNCA|ENSG00000145335.17|synuclein alpha
hg38_v1_chrX_+_37685773_37685808	0.717344	GLI3	ENST00000378616.5|XK|ENSG00000047597.7|X-linked Kx blood group
hg38_v1_chr9_+_35673917_35673955	0.707218	GLI3	ENST00000617161.1|CA9|ENSG00000107159.13|carbonic anhydrase 9	ENST00000378357.9|CA9|ENSG00000107159.13|carbonic anhydrase 9
hg38_v1_chr17_-_41140487_41140545	0.705718	GLI3	ENST00000345847.4|KRTAP4-6|ENSG00000198090.3|keratin associated protein 4-6
hg38_v1_chrX_+_136536099_136536195	0.689727	GLI3	ENST00000440515.5|VGLL1|ENSG00000102243.13|vestigial like family member 1	ENST00000456412.1|VGLL1|ENSG00000102243.13|vestigial like family member 1
hg38_v1_chr8_-_17697654_17697696	0.686362	GLI3	ENST00000297488.10|MTUS1|ENSG00000129422.14|microtubule associated scaffold protein 1
hg38_v1_chr15_-_72197772_72197804	0.6808	GLI3	ENST00000309731.12|GRAMD2A|ENSG00000175318.12|GRAM domain containing 2A
hg38_v1_chr15_+_40239857_40239871	0.676247	GLI3	ENST00000260404.8|PAK6|ENSG00000137843.12|p21 (RAC1) activated kinase 6
hg38_v1_chr8_-_544825_544885	0.671608	GLI3	ENST00000324079.11|TDRP|ENSG00000180190.13|testis development related protein
hg38_v1_chr8_+_144148027_144148046	0.658659	GLI3	ENST00000423230.6|MROH1|ENSG00000179832.18|maestro heat like repeat family member 1
hg38_v1_chr19_+_44914588_44914613	0.654458	GLI3	ENST00000592535.6|APOC1|ENSG00000130208.10|apolipoprotein C1
hg38_v1_chr15_+_45129933_45130018	0.652325	GLI3	ENST00000321429.8|DUOX1|ENSG00000137857.18|dual oxidase 1	ENST00000389037.7|DUOX1|ENSG00000137857.18|dual oxidase 1	ENST00000558322.5|DUOX1|ENSG00000137857.18|dual oxidase 1
hg38_v1_chr6_-_46735693_46735727	0.646823	GLI3	ENST00000537365.1|PLA2G7|ENSG00000146070.17|phospholipase A2 group VII
hg38_v1_chr15_+_90184912_90184981	0.631528	GLI3	ENST00000561085.1|SEMA4B|ENSG00000185033.14|semaphorin 4B	ENST00000332496.10|SEMA4B|ENSG00000185033.14|semaphorin 4B
hg38_v1_chr17_+_75754618_75754712	0.622584	GLI3	ENST00000584939.1|ITGB4|ENSG00000132470.14|integrin subunit beta 4
hg38_v1_chr16_+_3065348_3065377	0.622145	GLI3	ENST00000529699.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000526464.6|IL32|ENSG00000008517.19|interleukin 32	ENST00000440815.7|IL32|ENSG00000008517.19|interleukin 32	ENST00000529550.5|IL32|ENSG00000008517.19|interleukin 32
hg38_v1_chr1_+_43270007_43270025	0.620972	GLI3	ENST00000432792.6|TMEM125|ENSG00000179178.11|transmembrane protein 125
hg38_v1_chr1_+_43269974_43269988	0.620321	GLI3	ENST00000439858.6|TMEM125|ENSG00000179178.11|transmembrane protein 125
hg38_v1_chr5_+_69492767_69492831	0.606941	GLI3	ENST00000681041.1|OCLN|ENSG00000197822.12|occludin	ENST00000680098.1|OCLN|ENSG00000197822.12|occludin	ENST00000680784.1|OCLN|ENSG00000197822.12|occludin	ENST00000396442.7|OCLN|ENSG00000197822.12|occludin	ENST00000681895.1|OCLN|ENSG00000197822.12|occludin
hg38_v1_chr19_+_44914833_44914872	0.604651	GLI3	ENST00000589078.1|APOC1|ENSG00000130208.10|apolipoprotein C1	ENST00000586638.5|APOC1|ENSG00000130208.10|apolipoprotein C1
hg38_v1_chr8_+_22059198_22059223	0.604284	GLI3	ENST00000523266.5|DMTN|ENSG00000158856.18|dematin actin binding protein	ENST00000519907.5|DMTN|ENSG00000158856.18|dematin actin binding protein
hg38_v1_chr16_+_30183595_30183634	0.601943	GLI3	ENST00000219150.10|CORO1A|ENSG00000102879.16|coronin 1A	ENST00000570045.5|CORO1A|ENSG00000102879.16|coronin 1A	ENST00000565497.5|CORO1A|ENSG00000102879.16|coronin 1A	ENST00000570244.5|CORO1A|ENSG00000102879.16|coronin 1A
hg38_v1_chr18_-_77132757_77132769	0.600434	GLI3	ENST00000397860.7|MBP|ENSG00000197971.16|myelin basic protein
hg38_v1_chr12_+_4269771_4269791	0.594311	GLI3	ENST00000676411.1|CCND2|ENSG00000118971.9|cyclin D2
hg38_v1_chrX_+_51406947_51406978	0.588871	GLI3	ENST00000342995.4|EZHIP|ENSG00000187690.4|EZH inhibitory protein
hg38_v1_chrX_-_15675012_15675110	0.587463	GLI3	ENST00000650271.1|CLTRN|ENSG00000147003.7|collectrin, amino acid transport regulator
hg38_v1_chr4_-_48906720_48906783	0.587196	GLI3	ENST00000381464.6|OCIAD2|ENSG00000145247.12|OCIA domain containing 2	ENST00000508632.6|OCIAD2|ENSG00000145247.12|OCIA domain containing 2
hg38_v1_chr8_+_97887903_97887977	0.5859	GLI3	ENST00000520016.5|MATN2|ENSG00000132561.14|matrilin 2
hg38_v1_chr20_-_52191697_52191725	0.581971	GLI3	ENST00000361387.6|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein
hg38_v1_chr6_-_134052594_134052657	0.578707	GLI3	ENST00000275230.6|SLC2A12|ENSG00000146411.6|solute carrier family 2 member 12
hg38_v1_chr22_+_44668547_44668611	0.573323	GLI3	ENST00000611394.4|PRR5|ENSG00000186654.21|proline rich 5	ENST00000617066.4|PRR5|ENSG00000186654.21|proline rich 5
hg38_v1_chrX_-_79367307_79367380	0.565101	GLI3	ENST00000373298.7|ITM2A|ENSG00000078596.11|integral membrane protein 2A
hg38_v1_chr3_-_197029775_197029854	0.557149	GLI3	ENST00000439320.1|MELTF|ENSG00000163975.12|melanotransferrin	ENST00000296351.8|MELTF|ENSG00000163975.12|melanotransferrin	ENST00000296350.10|MELTF|ENSG00000163975.12|melanotransferrin
hg38_v1_chr6_-_105179952_105180041	0.54851	GLI3	ENST00000254765.4|POPDC3|ENSG00000132429.10|popeye domain containing 3
hg38_v1_chr19_+_40775511_40775547	0.538992	GLI3	ENST00000263369.4|MIA|ENSG00000261857.7|MIA SH3 domain containing	ENST00000597140.5|MIA|ENSG00000261857.7|MIA SH3 domain containing
hg38_v1_chr14_-_106324743_106324760	0.538309	GLI3	ENST00000390612.3|IGHV4-28|ENSG00000211952.3|immunoglobulin heavy variable 4-28
hg38_v1_chr1_-_85048437_85048519	0.521756	GLI3	ENST00000341115.8|MCOLN3|ENSG00000055732.13|mucolipin TRP cation channel 3	ENST00000370587.5|MCOLN3|ENSG00000055732.13|mucolipin TRP cation channel 3	ENST00000370589.7|MCOLN3|ENSG00000055732.13|mucolipin TRP cation channel 3
hg38_v1_chr19_+_44914702_44914713	0.515367	GLI3	ENST00000592885.5|APOC1|ENSG00000130208.10|apolipoprotein C1	ENST00000589781.1|APOC1|ENSG00000130208.10|apolipoprotein C1
hg38_v1_chr20_-_1325707_1325723	0.513426	GLI3	ENST00000381812.5|SDCBP2|ENSG00000125775.15|syndecan binding protein 2
hg38_v1_chr19_+_40775154_40775264	0.51129	GLI3	ENST00000594436.5|MIA|ENSG00000261857.7|MIA SH3 domain containing	ENST00000597784.5|MIA|ENSG00000261857.7|MIA SH3 domain containing
hg38_v1_chr14_+_75278820_75278977	0.501086	GLI3	ENST00000554617.1|FOS|ENSG00000170345.10|Fos proto-oncogene, AP-1 transcription factor subunit	ENST00000554212.5|FOS|ENSG00000170345.10|Fos proto-oncogene, AP-1 transcription factor subunit	ENST00000535987.5|FOS|ENSG00000170345.10|Fos proto-oncogene, AP-1 transcription factor subunit	ENST00000303562.9|FOS|ENSG00000170345.10|Fos proto-oncogene, AP-1 transcription factor subunit	ENST00000555242.1|FOS|ENSG00000170345.10|Fos proto-oncogene, AP-1 transcription factor subunit
hg38_v1_chr20_-_1325746_1325869	0.500958	GLI3	ENST00000339987.7|SDCBP2|ENSG00000125775.15|syndecan binding protein 2
hg38_v1_chr20_+_63554142_63554165	0.489581	GLI3	ENST00000370097.2|FNDC11|ENSG00000125531.7|fibronectin type III domain containing 11
hg38_v1_chr4_-_48906788_48906803	0.487894	GLI3	ENST00000273860.8|OCIAD2|ENSG00000145247.12|OCIA domain containing 2
hg38_v1_chr19_+_44914247_44914332	0.483536	GLI3	ENST00000588750.5|APOC1|ENSG00000130208.10|apolipoprotein C1	ENST00000588802.5|APOC1|ENSG00000130208.10|apolipoprotein C1
hg38_v1_chr19_-_11577632_11577671	0.48315	GLI3	ENST00000590420.1|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant	ENST00000648477.1|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant
hg38_v1_chr12_-_54384687_54384771	0.482026	GLI3	ENST00000550120.1|ZNF385A|ENSG00000161642.18|zinc finger protein 385A	ENST00000547210.5|ZNF385A|ENSG00000161642.18|zinc finger protein 385A	ENST00000394313.7|ZNF385A|ENSG00000161642.18|zinc finger protein 385A
hg38_v1_chr11_-_88337722_88337791	0.481472	GLI3	ENST00000677976.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000528020.2|CTSC|ENSG00000109861.17|cathepsin C	ENST00000393301.5|CTSC|ENSG00000109861.17|cathepsin C	ENST00000529974.2|CTSC|ENSG00000109861.17|cathepsin C	ENST00000227266.10|CTSC|ENSG00000109861.17|cathepsin C	ENST00000678464.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000679199.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000527018.6|CTSC|ENSG00000109861.17|cathepsin C	ENST00000679224.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000678506.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000678915.1|CTSC|ENSG00000109861.17|cathepsin C	ENST00000524463.6|CTSC|ENSG00000109861.17|cathepsin C
hg38_v1_chr12_+_6946468_6946586	0.480942	GLI3	ENST00000543115.5|PTPN6|ENSG00000111679.17|protein tyrosine phosphatase non-receptor type 6	ENST00000399448.5|PTPN6|ENSG00000111679.17|protein tyrosine phosphatase non-receptor type 6
hg38_v1_chr9_-_5304713_5304719	0.475936	GLI3	ENST00000381627.4|RLN2|ENSG00000107014.9|relaxin 2
hg38_v1_chr18_+_62325269_62325293	0.474134	GLI3	ENST00000639222.1|TNFRSF11A|ENSG00000141655.17|TNF receptor superfamily member 11a	ENST00000269485.11|TNFRSF11A|ENSG00000141655.17|TNF receptor superfamily member 11a	ENST00000616710.4|TNFRSF11A|ENSG00000141655.17|TNF receptor superfamily member 11a	ENST00000617039.4|TNFRSF11A|ENSG00000141655.17|TNF receptor superfamily member 11a
hg38_v1_chr14_+_61529005_61529128	0.472141	GLI3	ENST00000556347.1|ENSG00000258989.1|ENSG00000258989.1|novel protein
hg38_v1_chr3_+_136819069_136819161	0.470006	GLI3	ENST00000393079.3|SLC35G2|ENSG00000168917.9|solute carrier family 35 member G2	ENST00000446465.3|SLC35G2|ENSG00000168917.9|solute carrier family 35 member G2
hg38_v1_chr1_-_84893166_84893219	0.468976	GLI3	ENST00000370611.4|LPAR3|ENSG00000171517.6|lysophosphatidic acid receptor 3
hg38_v1_chr3_+_186930518_186930586	0.457324	GLI3	ENST00000169298.8|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1	ENST00000457772.6|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1	ENST00000455441.5|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1	ENST00000427315.5|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1
hg38_v1_chr18_+_62325294_62325322	0.44994	GLI3	ENST00000586569.3|TNFRSF11A|ENSG00000141655.17|TNF receptor superfamily member 11a
hg38_v1_chr3_+_186930759_186930779	0.44365	GLI3	ENST00000677292.1|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1	ENST00000458216.5|ST6GAL1|ENSG00000073849.16|ST6 beta-galactoside alpha-2,6-sialyltransferase 1
hg38_v1_chr21_-_26573211_26573305	0.442614	GLI3	ENST00000299340.9|CYYR1|ENSG00000166265.13|cysteine and tyrosine rich 1	ENST00000652641.2|CYYR1|ENSG00000166265.13|cysteine and tyrosine rich 1
hg38_v1_chr14_-_91836440_91836461	0.437853	GLI3	ENST00000340892.9|TC2N|ENSG00000165929.13|tandem C2 domains, nuclear	ENST00000360594.9|TC2N|ENSG00000165929.13|tandem C2 domains, nuclear
hg38_v1_chr17_-_81653693_81653737	0.437222	GLI3	ENST00000571004.1|PDE6G|ENSG00000185527.12|phosphodiesterase 6G
hg38_v1_chr2_-_240140649_240140665	0.437073	GLI3	ENST00000319460.2|OTOS|ENSG00000178602.8|otospiralin
hg38_v1_chr7_-_108456321_108456340	0.43397	GLI3	ENST00000379024.8|NRCAM|ENSG00000091129.21|neuronal cell adhesion molecule	ENST00000351718.8|NRCAM|ENSG00000091129.21|neuronal cell adhesion molecule
hg38_v1_chr1_-_54801290_54801329	0.432795	GLI3	ENST00000371276.9|TTC22|ENSG00000006555.11|tetratricopeptide repeat domain 22
hg38_v1_chr19_-_20661507_20661546	0.432198	GLI3	ENST00000612591.4|ZNF626|ENSG00000188171.16|zinc finger protein 626	ENST00000595405.1|ZNF626|ENSG00000188171.16|zinc finger protein 626
hg38_v1_chr19_+_18173804_18173829	0.429624	GLI3	ENST00000407280.4|IFI30|ENSG00000216490.4|IFI30 lysosomal thiol reductase
hg38_v1_chr11_+_121590388_121590419	0.428855	GLI3	ENST00000527934.1|SORL1|ENSG00000137642.13|sortilin related receptor 1
hg38_v1_chr16_+_2988256_2988263	0.42716	GLI3	ENST00000573315.2|LINC00514|ENSG00000262152.7|long intergenic non-protein coding RNA 514
hg38_v1_chr8_+_22059169_22059183	0.41809	GLI3	ENST00000358242.5|DMTN|ENSG00000158856.18|dematin actin binding protein
hg38_v1_chr13_-_113364085_113364138	0.417522	GLI3	ENST00000375431.9|GRTP1|ENSG00000139835.14|growth hormone regulated TBC protein 1
hg38_v1_chr9_-_114387973_114387991	0.414931	GLI3	ENST00000374088.8|AKNA|ENSG00000106948.17|AT-hook transcription factor
hg38_v1_chr17_-_48430205_48430246	0.411962	GLI3	ENST00000336915.11|SKAP1|ENSG00000141293.16|src kinase associated phosphoprotein 1	ENST00000584924.5|SKAP1|ENSG00000141293.16|src kinase associated phosphoprotein 1
hg38_v1_chrX_-_101659796_101659857	0.411806	GLI3	ENST00000431597.5|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2	ENST00000458024.5|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2	ENST00000413506.5|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2	ENST00000440675.5|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2	ENST00000328766.9|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2	ENST00000356824.9|ARMCX2|ENSG00000184867.14|armadillo repeat containing X-linked 2
hg38_v1_chr19_-_38256513_38256532	0.410904	GLI3	ENST00000347262.8|PPP1R14A|ENSG00000167641.11|protein phosphatase 1 regulatory inhibitor subunit 14A	ENST00000591585.1|PPP1R14A|ENSG00000167641.11|protein phosphatase 1 regulatory inhibitor subunit 14A
hg38_v1_chr22_+_24594781_24594814	0.410691	GLI3	ENST00000456869.5|GGT1|ENSG00000100031.19|gamma-glutamyltransferase 1	ENST00000411974.5|GGT1|ENSG00000100031.19|gamma-glutamyltransferase 1
hg38_v1_chr7_-_108456378_108456445	0.406772	GLI3	ENST00000613830.4|NRCAM|ENSG00000091129.21|neuronal cell adhesion molecule	ENST00000413765.6|NRCAM|ENSG00000091129.21|neuronal cell adhesion molecule	ENST00000379028.8|NRCAM|ENSG00000091129.21|neuronal cell adhesion molecule
hg38_v1_chr9_-_133149334_133149440	0.4065	GLI3	ENST00000393160.7|RALGDS|ENSG00000160271.16|ral guanine nucleotide dissociation stimulator
hg38_v1_chr4_+_15479204_15479244	0.403062	GLI3	ENST00000674945.1|CC2D2A|ENSG00000048342.18|coiled-coil and C2 domain containing 2A	ENST00000506643.5|CC2D2A|ENSG00000048342.18|coiled-coil and C2 domain containing 2A	ENST00000652443.1|CC2D2A|ENSG00000048342.18|coiled-coil and C2 domain containing 2A	ENST00000651385.1|CC2D2A|ENSG00000048342.18|coiled-coil and C2 domain containing 2A
hg38_v1_chr8_-_141000937_141001028	0.401385	GLI3	ENST00000520892.5|PTK2|ENSG00000169398.19|protein tyrosine kinase 2
hg38_v1_chr7_-_157010615_157010668	0.397839	GLI3	ENST00000252971.11|MNX1|ENSG00000130675.15|motor neuron and pancreas homeobox 1
hg38_v1_chr19_-_35490456_35490531	0.393624	GLI3	ENST00000338897.4|KRTDAP|ENSG00000188508.11|keratinocyte differentiation associated protein	ENST00000484218.6|KRTDAP|ENSG00000188508.11|keratinocyte differentiation associated protein
hg38_v1_chr8_+_22579139_22579150	0.390899	GLI3	ENST00000397761.6|PDLIM2|ENSG00000120913.23|PDZ and LIM domain 2
hg38_v1_chr6_+_137871208_137871229	0.388678	GLI3	ENST00000614035.4|TNFAIP3|ENSG00000118503.15|TNF alpha induced protein 3	ENST00000621150.3|TNFAIP3|ENSG00000118503.15|TNF alpha induced protein 3	ENST00000619035.4|TNFAIP3|ENSG00000118503.15|TNF alpha induced protein 3	ENST00000615468.4|TNFAIP3|ENSG00000118503.15|TNF alpha induced protein 3	ENST00000620204.3|TNFAIP3|ENSG00000118503.15|TNF alpha induced protein 3
hg38_v1_chr20_-_52105644_52105678	0.388384	GLI3	ENST00000371523.8|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein
hg38_v1_chr5_+_69415065_69415157	0.386148	GLI3	ENST00000647531.1|MARVELD2|ENSG00000152939.17|MARVEL domain containing 2	ENST00000645446.1|MARVELD2|ENSG00000152939.17|MARVEL domain containing 2	ENST00000325631.10|MARVELD2|ENSG00000152939.17|MARVEL domain containing 2	ENST00000454295.6|MARVELD2|ENSG00000152939.17|MARVEL domain containing 2
hg38_v1_chrX_+_107206605_107206623	0.386067	GLI3	ENST00000372453.8|DNAAF6|ENSG00000080572.13|dynein axonemal assembly factor 6
hg38_v1_chr1_+_15152558_15152577	0.378197	GLI3	ENST00000376014.7|TMEM51|ENSG00000171729.14|transmembrane protein 51	ENST00000451326.6|TMEM51|ENSG00000171729.14|transmembrane protein 51
hg38_v1_chr20_-_22584547_22584585	0.373153	GLI3	ENST00000419308.7|FOXA2|ENSG00000125798.15|forkhead box A2
hg38_v1_chr16_+_3065610_3065812	0.373139	GLI3	ENST00000530890.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000444393.7|IL32|ENSG00000008517.19|interleukin 32	ENST00000533097.6|IL32|ENSG00000008517.19|interleukin 32	ENST00000008180.13|IL32|ENSG00000008517.19|interleukin 32	ENST00000396890.6|IL32|ENSG00000008517.19|interleukin 32	ENST00000525228.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000525643.7|IL32|ENSG00000008517.19|interleukin 32	ENST00000548652.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000525377.6|IL32|ENSG00000008517.19|interleukin 32	ENST00000530538.6|IL32|ENSG00000008517.19|interleukin 32	ENST00000549213.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000552936.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000548476.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000552664.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000552356.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000551513.5|IL32|ENSG00000008517.19|interleukin 32	ENST00000382213.7|IL32|ENSG00000008517.19|interleukin 32	ENST00000548246.1|IL32|ENSG00000008517.19|interleukin 32
hg38_v1_chr4_-_48906805_48906828	0.371846	GLI3	ENST00000620187.4|OCIAD2|ENSG00000145247.12|OCIA domain containing 2
hg38_v1_chr8_-_144416481_144416512	0.367242	GLI3	ENST00000276833.9|SLC39A4|ENSG00000147804.10|solute carrier family 39 member 4
hg38_v1_chr1_+_70411241_70411383	0.366396	GLI3	ENST00000370938.8|CTH|ENSG00000116761.12|cystathionine gamma-lyase	ENST00000346806.2|CTH|ENSG00000116761.12|cystathionine gamma-lyase
hg38_v1_chr20_-_22585451_22585459	0.361223	GLI3	ENST00000377115.4|FOXA2|ENSG00000125798.15|forkhead box A2
hg38_v1_chr18_+_79964629_79964653	0.359452	GLI3	ENST00000451882.3|HSBP1L1|ENSG00000226742.4|heat shock factor binding protein 1 like 1
hg38_v1_chr2_+_237859615_237859632	0.356292	GLI3	ENST00000409726.5|RAMP1|ENSG00000132329.11|receptor activity modifying protein 1	ENST00000254661.5|RAMP1|ENSG00000132329.11|receptor activity modifying protein 1
hg38_v1_chr20_+_21125999_21126010	0.355726	GLI3	ENST00000620891.4|KIZ|ENSG00000088970.16|kizuna centrosomal protein
hg38_v1_chr15_-_41544243_41544277	0.35106	GLI3	ENST00000567866.5|RPAP1|ENSG00000103932.12|RNA polymerase II associated protein 1	ENST00000304330.9|RPAP1|ENSG00000103932.12|RNA polymerase II associated protein 1	ENST00000561603.5|RPAP1|ENSG00000103932.12|RNA polymerase II associated protein 1	ENST00000566863.1|RPAP1|ENSG00000103932.12|RNA polymerase II associated protein 1
hg38_v1_chr20_+_33731976_33732007	0.347435	GLI3	ENST00000375200.6|ZNF341|ENSG00000131061.14|zinc finger protein 341
hg38_v1_chrX_+_107206632_107206676	0.344691	GLI3	ENST00000535523.5|DNAAF6|ENSG00000080572.13|dynein axonemal assembly factor 6	ENST00000673764.1|DNAAF6|ENSG00000080572.13|dynein axonemal assembly factor 6
hg38_v1_chr9_-_5339874_5339881	0.344269	GLI3	ENST00000223862.2|RLN1|ENSG00000107018.8|relaxin 1
hg38_v1_chr3_+_126983035_126983126	0.343763	GLI3	ENST00000393409.3|PLXNA1|ENSG00000114554.12|plexin A1
hg38_v1_chr7_+_130492066_130492113	0.341183	GLI3	ENST00000223215.10|MEST|ENSG00000106484.16|mesoderm specific transcript	ENST00000437945.6|MEST|ENSG00000106484.16|mesoderm specific transcript
hg38_v1_chr1_-_1421302_1421444	0.340589	GLI3	ENST00000520296.5|ANKRD65|ENSG00000235098.9|ankyrin repeat domain 65
hg38_v1_chr22_+_37639660_37639700	0.335087	GLI3	ENST00000649765.2|SH3BP1|ENSG00000100092.24|SH3 domain binding protein 1	ENST00000451997.6|ENSG00000285304.1|ENSG00000285304.1|novel protein
hg38_v1_chr8_-_17676484_17676500	0.333638	GLI3	ENST00000634613.1|MTUS1|ENSG00000129422.14|microtubule associated scaffold protein 1	ENST00000519066.5|MTUS1|ENSG00000129422.14|microtubule associated scaffold protein 1
hg38_v1_chr11_+_35180342_35180383	0.331821	GLI3	ENST00000639002.1|CD44|ENSG00000026508.20|CD44 molecule (Indian blood group)
hg38_v1_chr10_+_5524953_5524969	0.33086	GLI3	ENST00000315238.3|CALML3|ENSG00000178363.5|calmodulin like 3
hg38_v1_chr6_+_33080445_33080487	0.330689	GLI3	ENST00000428835.5|HLA-DPB1|ENSG00000223865.11|major histocompatibility complex, class II, DP beta 1
hg38_v1_chr17_-_4560564_4560601	0.330461	GLI3	ENST00000574584.1|GGT6|ENSG00000167741.11|gamma-glutamyltransferase 6	ENST00000381550.8|GGT6|ENSG00000167741.11|gamma-glutamyltransferase 6	ENST00000301395.7|GGT6|ENSG00000167741.11|gamma-glutamyltransferase 6
hg38_v1_chr1_+_6450374_6450392	0.32743	GLI3	ENST00000475479.2|ESPN|ENSG00000187017.17|espin
hg38_v1_chr22_+_31248402_31248487	0.325598	GLI3	ENST00000333611.8|LIMK2|ENSG00000182541.18|LIM domain kinase 2	ENST00000340552.4|LIMK2|ENSG00000182541.18|LIM domain kinase 2
hg38_v1_chr7_-_945799_945825	0.324309	GLI3	ENST00000611167.4|ADAP1|ENSG00000105963.15|ArfGAP with dual PH domains 1
hg38_v1_chr3_-_50611767_50611781	0.322208	GLI3	ENST00000443053.6|CISH|ENSG00000114737.16|cytokine inducible SH2 containing protein	ENST00000348721.4|CISH|ENSG00000114737.16|cytokine inducible SH2 containing protein
hg38_v1_chr3_+_44584953_44584985	0.321866	GLI3	ENST00000441021.5|ZNF660|ENSG00000144792.9|zinc finger protein 660	ENST00000322734.2|ZNF660|ENSG00000144792.9|zinc finger protein 660
hg38_v1_chr16_-_11587450_11587563	0.318578	GLI3	ENST00000571688.5|LITAF|ENSG00000189067.14|lipopolysaccharide induced TNF factor
hg38_v1_chr15_+_64911869_64911919	0.318525	GLI3	ENST00000319580.13|ANKDD1A|ENSG00000166839.17|ankyrin repeat and death domain containing 1A	ENST00000496660.5|ANKDD1A|ENSG00000166839.17|ankyrin repeat and death domain containing 1A
hg38_v1_chr12_-_57016517_57016566	0.317595	GLI3	ENST00000441881.5|TAC3|ENSG00000166863.13|tachykinin precursor 3	ENST00000458521.7|TAC3|ENSG00000166863.13|tachykinin precursor 3
hg38_v1_chr5_-_151224069_151224099	0.3162	GLI3	ENST00000355417.7|CCDC69|ENSG00000198624.13|coiled-coil domain containing 69
hg38_v1_chr12_+_70366277_70366305	0.315687	GLI3	ENST00000258111.5|KCNMB4|ENSG00000135643.5|potassium calcium-activated channel subfamily M regulatory beta subunit 4
hg38_v1_chr1_+_15153698_15153780	0.314245	GLI3	ENST00000400796.7|TMEM51|ENSG00000171729.14|transmembrane protein 51	ENST00000376008.3|TMEM51|ENSG00000171729.14|transmembrane protein 51	ENST00000434578.6|TMEM51|ENSG00000171729.14|transmembrane protein 51
hg38_v1_chr18_+_58362467_58362493	0.31403	GLI3	ENST00000675101.1|NEDD4L|ENSG00000049759.20|NEDD4 like E3 ubiquitin protein ligase
hg38_v1_chr2_+_127646145_127646172	0.310782	GLI3	ENST00000486700.2|GPR17|ENSG00000144230.17|G protein-coupled receptor 17	ENST00000272644.7|GPR17|ENSG00000144230.17|G protein-coupled receptor 17
hg38_v1_chr16_-_11587162_11587289	0.309353	GLI3	ENST00000570904.5|LITAF|ENSG00000189067.14|lipopolysaccharide induced TNF factor	ENST00000574701.5|LITAF|ENSG00000189067.14|lipopolysaccharide induced TNF factor
hg38_v1_chr9_+_121737151_121737184	0.309264	GLI3	ENST00000648444.1|DAB2IP|ENSG00000136848.17|DAB2 interacting protein
hg38_v1_chr1_-_6497096_6497235	0.307261	GLI3	ENST00000537245.6|PLEKHG5|ENSG00000171680.23|pleckstrin homology and RhoGEF domain containing G5
hg38_v1_chr6_+_3849350_3849429	0.30585	GLI3	ENST00000648326.1|FAM50B|ENSG00000145945.7|family with sequence similarity 50 member B	ENST00000380274.2|FAM50B|ENSG00000145945.7|family with sequence similarity 50 member B
hg38_v1_chr1_-_205813177_205813204	0.301445	GLI3	ENST00000367137.4|SLC41A1|ENSG00000133065.11|solute carrier family 41 member 1
hg38_v1_chr12_+_72272360_72272406	0.301409	GLI3	ENST00000547300.2|TRHDE|ENSG00000072657.10|thyrotropin releasing hormone degrading enzyme	ENST00000261180.10|TRHDE|ENSG00000072657.10|thyrotropin releasing hormone degrading enzyme
hg38_v1_chr20_+_56629296_56629321	0.295447	GLI3	ENST00000201031.3|TFAP2C|ENSG00000087510.7|transcription factor AP-2 gamma
hg38_v1_chr6_+_116370938_116371050	0.288943	GLI3	ENST00000644252.3|DSE|ENSG00000111817.19|dermatan sulfate epimerase	ENST00000646710.1|DSE|ENSG00000111817.19|dermatan sulfate epimerase	ENST00000359564.3|DSE|ENSG00000111817.19|dermatan sulfate epimerase
hg38_v1_chr5_+_36166556_36166612	0.288073	GLI3	ENST00000677886.1|SKP2|ENSG00000145604.17|S-phase kinase associated protein 2
hg38_v1_chr15_+_85380625_85380654	0.285068	GLI3	ENST00000560302.5|AKAP13|ENSG00000170776.22|A-kinase anchoring protein 13
hg38_v1_chr5_-_180209145_180209220	0.283835	GLI3	ENST00000615330.4|RASGEF1C|ENSG00000146090.16|RasGEF domain family member 1C	ENST00000361132.9|RASGEF1C|ENSG00000146090.16|RasGEF domain family member 1C
hg38_v1_chr15_-_75712828_75712856	0.280795	GLI3	ENST00000308508.5|CSPG4|ENSG00000173546.7|chondroitin sulfate proteoglycan 4
hg38_v1_chr1_+_70411180_70411238	0.280732	GLI3	ENST00000411986.6|CTH|ENSG00000116761.12|cystathionine gamma-lyase
hg38_v1_chr13_-_113364141_113364164	0.276786	GLI3	ENST00000620217.4|GRTP1|ENSG00000139835.14|growth hormone regulated TBC protein 1	ENST00000375430.8|GRTP1|ENSG00000139835.14|growth hormone regulated TBC protein 1
hg38_v1_chr16_+_2009870_2009927	0.27639	GLI3	ENST00000567649.1|NPW|ENSG00000183971.10|neuropeptide W
hg38_v1_chr16_-_23510389_23510505	0.275181	GLI3	ENST00000562117.1|GGA2|ENSG00000103365.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2	ENST00000567468.5|GGA2|ENSG00000103365.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2	ENST00000562944.5|GGA2|ENSG00000103365.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2	ENST00000309859.8|GGA2|ENSG00000103365.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2
hg38_v1_chr6_+_110982028_110982098	0.271776	GLI3	ENST00000441448.7|RPF2|ENSG00000197498.13|ribosome production factor 2 homolog
hg38_v1_chr19_-_11578937_11578986	0.271516	GLI3	ENST00000592659.1|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant	ENST00000592828.6|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant	ENST00000218758.9|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant	ENST00000412435.6|ACP5|ENSG00000102575.13|acid phosphatase 5, tartrate resistant
hg38_v1_chr17_+_82735551_82735638	0.271145	GLI3	ENST00000300784.8|FN3K|ENSG00000167363.14|fructosamine 3 kinase
hg38_v1_chr14_+_69611586_69611604	0.271049	GLI3	ENST00000342745.5|SUSD6|ENSG00000100647.8|sushi domain containing 6
hg38_v1_chr5_+_162067858_162067880	0.270403	GLI3	ENST00000361925.9|GABRG2|ENSG00000113327.17|gamma-aminobutyric acid type A receptor subunit gamma2
hg38_v1_chr3_+_184363351_184363367	0.26979	GLI3	ENST00000443489.5|POLR2H|ENSG00000163882.9|RNA polymerase II, I and III subunit H
hg38_v1_chr19_+_9247344_9247344	0.269508	GLI3	ENST00000641946.1|OR7E24|ENSG00000237521.4|olfactory receptor family 7 subfamily E member 24
hg38_v1_chr6_+_33204645_33204700	0.267256	GLI3	ENST00000374662.4|HSD17B8|ENSG00000204228.4|hydroxysteroid 17-beta dehydrogenase 8
hg38_v1_chr6_+_142301926_142302124	0.265104	GLI3	ENST00000296932.13|ADGRG6|ENSG00000112414.15|adhesion G protein-coupled receptor G6	ENST00000367609.8|ADGRG6|ENSG00000112414.15|adhesion G protein-coupled receptor G6
hg38_v1_chr1_-_1421248_1421301	0.263763	GLI3	ENST00000442470.1|ANKRD65|ENSG00000235098.9|ankyrin repeat domain 65	ENST00000537107.6|ANKRD65|ENSG00000235098.9|ankyrin repeat domain 65
hg38_v1_chr19_+_53869384_53869406	0.263212	GLI3	ENST00000391769.2|MYADM|ENSG00000179820.16|myeloid associated differentiation marker
hg38_v1_chr19_+_35000426_35000470	0.262972	GLI3	ENST00000411896.6|GRAMD1A|ENSG00000089351.15|GRAM domain containing 1A	ENST00000424536.2|GRAMD1A|ENSG00000089351.15|GRAM domain containing 1A
hg38_v1_chr7_-_112790372_112790423	0.2615	GLI3	ENST00000449743.1|TMEM168|ENSG00000146802.13|transmembrane protein 168	ENST00000441474.1|TMEM168|ENSG00000146802.13|transmembrane protein 168	ENST00000312814.11|TMEM168|ENSG00000146802.13|transmembrane protein 168	ENST00000454074.5|TMEM168|ENSG00000146802.13|transmembrane protein 168	ENST00000447395.5|TMEM168|ENSG00000146802.13|transmembrane protein 168
hg38_v1_chr19_+_43580544_43580638	0.26074	GLI3	ENST00000562255.5|PINLYP|ENSG00000234465.11|phospholipase A2 inhibitor and LY6/PLAUR domain containing	ENST00000569031.6|PINLYP|ENSG00000234465.11|phospholipase A2 inhibitor and LY6/PLAUR domain containing
hg38_v1_chr2_+_158968608_158968695	0.259729	GLI3	ENST00000263635.8|TANC1|ENSG00000115183.15|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
hg38_v1_chr19_-_2051224_2051253	0.25797	GLI3	ENST00000309340.11|MKNK2|ENSG00000099875.16|MAPK interacting serine/threonine kinase 2	ENST00000589534.2|MKNK2|ENSG00000099875.16|MAPK interacting serine/threonine kinase 2	ENST00000250896.9|MKNK2|ENSG00000099875.16|MAPK interacting serine/threonine kinase 2	ENST00000589509.5|MKNK2|ENSG00000099875.16|MAPK interacting serine/threonine kinase 2
hg38_v1_chr14_+_92652468_92652526	0.257313	GLI3	ENST00000556418.1|RIN3|ENSG00000100599.16|Ras and Rab interactor 3
hg38_v1_chr1_+_220528785_220528816	0.256007	GLI3	ENST00000678435.1|MARK1|ENSG00000116141.17|microtubule affinity regulating kinase 1
hg38_v1_chr7_+_142492121_142492145	0.25486	GLI3	ENST00000390374.3|TRBV7-6|ENSG00000211727.3|T cell receptor beta variable 7-6
hg38_v1_chr5_+_162068031_162068050	0.254333	GLI3	ENST00000356592.8|GABRG2|ENSG00000113327.17|gamma-aminobutyric acid type A receptor subunit gamma2
hg38_v1_chr19_-_19170248_19170289	0.252526	GLI3	ENST00000410050.5|MEF2B|ENSG00000213999.17|myocyte enhancer factor 2B	ENST00000424583.7|MEF2B|ENSG00000213999.17|myocyte enhancer factor 2B	ENST00000409224.5|MEF2B|ENSG00000213999.17|myocyte enhancer factor 2B	ENST00000409447.2|MEF2B|ENSG00000213999.17|myocyte enhancer factor 2B
hg38_v1_chr22_+_24607638_24607655	0.250736	GLI3	ENST00000432867.5|GGT1|ENSG00000100031.19|gamma-glutamyltransferase 1
hg38_v1_chr4_+_71187269_71187327	0.250724	GLI3	ENST00000425175.5|SLC4A4|ENSG00000080493.18|solute carrier family 4 member 4	ENST00000351898.10|SLC4A4|ENSG00000080493.18|solute carrier family 4 member 4
hg38_v1_chr7_+_29806483_29806565	0.250211	GLI3	ENST00000409123.5|WIPF3|ENSG00000122574.11|WAS/WASL interacting protein family member 3	ENST00000242140.9|WIPF3|ENSG00000122574.11|WAS/WASL interacting protein family member 3
hg38_v1_chr11_+_57598184_57598275	0.249888	GLI3	ENST00000677625.1|SERPING1|ENSG00000149131.17|serpin family G member 1	ENST00000676670.1|SERPING1|ENSG00000149131.17|serpin family G member 1
hg38_v1_chr3_+_184363387_184363420	0.246602	GLI3	ENST00000452961.5|POLR2H|ENSG00000163882.9|RNA polymerase II, I and III subunit H
hg38_v1_chr13_-_46182136_46182213	0.246299	GLI3	ENST00000323076.7|LCP1|ENSG00000136167.15|lymphocyte cytosolic protein 1
hg38_v1_chr21_+_44939992_44940047	0.246055	GLI3	ENST00000397826.7|FAM207A|ENSG00000160256.13|family with sequence similarity 207 member A	ENST00000458015.1|FAM207A|ENSG00000160256.13|family with sequence similarity 207 member A	ENST00000291634.11|FAM207A|ENSG00000160256.13|family with sequence similarity 207 member A
hg38_v1_chr1_-_161044941_161044998	0.245539	GLI3	ENST00000368020.5|USF1|ENSG00000158773.14|upstream transcription factor 1
hg38_v1_chr3_-_59049947_59050084	0.245455	GLI3	ENST00000491845.5|CFAP20DC|ENSG00000163689.20|CFAP20 domain containing	ENST00000472469.5|CFAP20DC|ENSG00000163689.20|CFAP20 domain containing	ENST00000482387.6|CFAP20DC|ENSG00000163689.20|CFAP20 domain containing	ENST00000295966.11|CFAP20DC|ENSG00000163689.20|CFAP20 domain containing
hg38_v1_chr1_-_11805924_11805948	0.245227	GLI3	ENST00000418034.1|MTHFR|ENSG00000177000.13|methylenetetrahydrofolate reductase
hg38_v1_chr3_+_184363427_184363434	0.245174	GLI3	ENST00000429568.1|POLR2H|ENSG00000163882.9|RNA polymerase II, I and III subunit H
hg38_v1_chr5_+_162067764_162067781	0.243589	GLI3	ENST00000639213.2|GABRG2|ENSG00000113327.17|gamma-aminobutyric acid type A receptor subunit gamma2	ENST00000414552.6|GABRG2|ENSG00000113327.17|gamma-aminobutyric acid type A receptor subunit gamma2
hg38_v1_chr19_+_50649445_50649445	0.243352	GLI3	ENST00000425202.6|C19orf81|ENSG00000235034.7|chromosome 19 open reading frame 81
hg38_v1_chr17_+_7627963_7627980	0.242911	GLI3	ENST00000575729.5|SHBG|ENSG00000129214.15|sex hormone binding globulin	ENST00000340624.9|SHBG|ENSG00000129214.15|sex hormone binding globulin
hg38_v1_chr8_+_102551583_102551602	0.240937	GLI3	ENST00000285402.4|ODF1|ENSG00000155087.4|outer dense fiber of sperm tails 1
hg38_v1_chr5_+_162067990_162068016	0.239487	GLI3	ENST00000641017.1|GABRG2|ENSG00000113327.17|gamma-aminobutyric acid type A receptor subunit gamma2
hg38_v1_chr19_-_50968775_50968791	0.236396	GLI3	ENST00000391808.5|KLK6|ENSG00000167755.15|kallikrein related peptidase 6
hg38_v1_chr8_+_8701891_8701955	0.235402	GLI3	ENST00000519106.2|CLDN23|ENSG00000253958.2|claudin 23
hg38_v1_chr21_-_43058941_43058954	0.2345	GLI3	ENST00000451248.5|CBS|ENSG00000160200.18|cystathionine beta-synthase	ENST00000458223.5|CBS|ENSG00000160200.18|cystathionine beta-synthase
hg38_v1_chr17_-_41009124_41009129	0.233183	GLI3	ENST00000391588.3|KRTAP3-1|ENSG00000212901.4|keratin associated protein 3-1
hg38_v1_chr19_-_3546306_3546358	0.232462	GLI3	ENST00000398558.8|MFSD12|ENSG00000161091.14|major facilitator superfamily domain containing 12
hg38_v1_chr19_-_42255119_42255137	0.232255	GLI3	ENST00000222329.9|ERF|ENSG00000105722.10|ETS2 repressor factor	ENST00000594664.1|ENSG00000268643.2|ENSG00000268643.2|novel protein
hg38_v1_chr17_-_43953932_43953945	0.230733	GLI3	ENST00000592796.1|PYY|ENSG00000131096.10|peptide YY
hg38_v1_chr3_+_184561768_184561795	0.229645	GLI3	ENST00000330394.3|EPHB3|ENSG00000182580.3|EPH receptor B3
hg38_v1_chr16_+_2471284_2471310	0.229378	GLI3	ENST00000293973.2|NTN3|ENSG00000162068.2|netrin 3
hg38_v1_chr19_-_19643597_19643663	0.228907	GLI3	ENST00000587205.1|GMIP|ENSG00000089639.11|GEM interacting protein	ENST00000203556.9|GMIP|ENSG00000089639.11|GEM interacting protein
hg38_v1_chr7_-_111562455_111562517	0.228133	GLI3	ENST00000452895.5|IMMP2L|ENSG00000184903.10|inner mitochondrial membrane peptidase subunit 2	ENST00000405709.7|IMMP2L|ENSG00000184903.10|inner mitochondrial membrane peptidase subunit 2	ENST00000452753.1|IMMP2L|ENSG00000184903.10|inner mitochondrial membrane peptidase subunit 2	ENST00000331762.7|IMMP2L|ENSG00000184903.10|inner mitochondrial membrane peptidase subunit 2
hg38_v1_chr19_-_54242751_54242804	0.227695	GLI3	ENST00000245621.6|LILRA6|ENSG00000244482.10|leukocyte immunoglobulin like receptor A6	ENST00000396365.6|LILRA6|ENSG00000244482.10|leukocyte immunoglobulin like receptor A6
hg38_v1_chr4_-_7068033_7068088	0.226899	GLI3	ENST00000264954.5|GRPEL1|ENSG00000109519.13|GrpE like 1, mitochondrial
hg38_v1_chr10_+_104353820_104353839	0.22626	GLI3	ENST00000369704.8|CFAP58|ENSG00000120051.15|cilia and flagella associated protein 58
hg38_v1_chr4_-_46389351_46389399	0.224692	GLI3	ENST00000503806.5|GABRA2|ENSG00000151834.16|gamma-aminobutyric acid type A receptor subunit alpha2	ENST00000356504.5|GABRA2|ENSG00000151834.16|gamma-aminobutyric acid type A receptor subunit alpha2	ENST00000514090.5|GABRA2|ENSG00000151834.16|gamma-aminobutyric acid type A receptor subunit alpha2	ENST00000506961.5|GABRA2|ENSG00000151834.16|gamma-aminobutyric acid type A receptor subunit alpha2
hg38_v1_chr20_+_50731571_50731586	0.222275	GLI3	ENST00000371610.7|PARD6B|ENSG00000124171.9|par-6 family cell polarity regulator beta
hg38_v1_chr7_-_22500152_22500205	0.222107	GLI3	ENST00000406890.6|STEAP1B|ENSG00000105889.16|STEAP family member 1B	ENST00000678116.1|STEAP1B|ENSG00000105889.16|STEAP family member 1B	ENST00000424363.5|STEAP1B|ENSG00000105889.16|STEAP family member 1B
hg38_v1_chrX_-_7927375_7927453	0.221576	GLI3	ENST00000381042.9|PNPLA4|ENSG00000006757.12|patatin like phospholipase domain containing 4
hg38_v1_chr6_-_166956561_166956611	0.220939	GLI3	ENST00000366855.10|RNASET2|ENSG00000026297.17|ribonuclease T2
hg38_v1_chr20_+_44355692_44355805	0.219402	GLI3	ENST00000316673.8|HNF4A|ENSG00000101076.18|hepatocyte nuclear factor 4 alpha	ENST00000609795.5|HNF4A|ENSG00000101076.18|hepatocyte nuclear factor 4 alpha	ENST00000457232.5|HNF4A|ENSG00000101076.18|hepatocyte nuclear factor 4 alpha	ENST00000609262.5|HNF4A|ENSG00000101076.18|hepatocyte nuclear factor 4 alpha
hg38_v1_chr6_-_142147122_142147122	0.217372	GLI3	ENST00000258042.2|NMBR|ENSG00000135577.5|neuromedin B receptor
hg38_v1_chr16_-_4416564_4416604	0.216945	GLI3	ENST00000572467.5|CORO7-PAM16|ENSG00000103426.12|CORO7-PAM16 readthrough	ENST00000251166.9|CORO7|ENSG00000262246.6|coronin 7	ENST00000572044.1|CORO7|ENSG00000262246.6|coronin 7	ENST00000571052.5|CORO7|ENSG00000262246.6|coronin 7
hg38_v1_chr19_+_35717973_35718018	0.216	GLI3	ENST00000673918.1|KMT2B|ENSG00000272333.7|lysine methyltransferase 2B	ENST00000420124.4|KMT2B|ENSG00000272333.7|lysine methyltransferase 2B
hg38_v1_chr21_+_41167774_41167801	0.215943	GLI3	ENST00000328735.10|BACE2|ENSG00000182240.16|beta-secretase 2	ENST00000347667.5|BACE2|ENSG00000182240.16|beta-secretase 2
hg38_v1_chr2_+_96326204_96326223	0.215745	GLI3	ENST00000420728.1|ITPRIPL1|ENSG00000198885.10|ITPRIP like 1	ENST00000361124.5|ITPRIPL1|ENSG00000198885.10|ITPRIP like 1
hg38_v1_chr5_-_95961830_95961859	0.215411	GLI3	ENST00000513343.1|ELL2|ENSG00000118985.16|elongation factor for RNA polymerase II 2	ENST00000237853.9|ELL2|ENSG00000118985.16|elongation factor for RNA polymerase II 2
hg38_v1_chr9_-_83063135_83063149	0.215342	GLI3	ENST00000376447.4|RASEF|ENSG00000165105.10|RAS and EF-hand domain containing
hg38_v1_chr20_+_21126074_21126094	0.214921	GLI3	ENST00000619189.5|KIZ|ENSG00000088970.16|kizuna centrosomal protein
hg38_v1_chr20_+_21125981_21125996	0.214188	GLI3	ENST00000619574.4|KIZ|ENSG00000088970.16|kizuna centrosomal protein
hg38_v1_chr19_+_10106398_10106419	0.214003	GLI3	ENST00000393793.5|PPAN|ENSG00000130810.20|peter pan homolog
hg38_v1_chr12_+_6199715_6199875	0.213697	GLI3	ENST00000382518.6|CD9|ENSG00000010278.15|CD9 molecule	ENST00000642746.1|CD9|ENSG00000010278.15|CD9 molecule	ENST00000538834.6|CD9|ENSG00000010278.15|CD9 molecule
hg38_v1_chr1_+_23791138_23791192	0.212892	GLI3	ENST00000374514.8|LYPLA2|ENSG00000011009.11|lysophospholipase 2	ENST00000420982.5|LYPLA2|ENSG00000011009.11|lysophospholipase 2	ENST00000374505.6|LYPLA2|ENSG00000011009.11|lysophospholipase 2
hg38_v1_chr8_+_144147998_144148023	0.212528	GLI3	ENST00000326134.10|MROH1|ENSG00000179832.18|maestro heat like repeat family member 1
hg38_v1_chr19_-_16542415_16542464	0.212328	GLI3	ENST00000198939.6|CHERP|ENSG00000085872.15|calcium homeostasis endoplasmic reticulum protein	ENST00000546361.7|CHERP|ENSG00000085872.15|calcium homeostasis endoplasmic reticulum protein
hg38_v1_chr3_-_53046031_53046089	0.210717	GLI3	ENST00000482396.5|SFMBT1|ENSG00000163935.14|Scm like with four mbt domains 1	ENST00000394752.8|SFMBT1|ENSG00000163935.14|Scm like with four mbt domains 1
hg38_v1_chr14_+_94110728_94110815	0.210256	GLI3	ENST00000616764.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000618863.1|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000611954.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000618200.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000621160.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000555819.5|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000620396.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000612813.4|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27	ENST00000620066.1|IFI27|ENSG00000165949.12|interferon alpha inducible protein 27
hg38_v1_chr1_+_154974653_154974671	0.209984	GLI3	ENST00000368439.5|CKS1B|ENSG00000173207.13|CDC28 protein kinase regulatory subunit 1B
hg38_v1_chr3_-_38649668_38649713	0.209169	GLI3	ENST00000333535.9|SCN5A|ENSG00000183873.18|sodium voltage-gated channel alpha subunit 5	ENST00000413689.6|SCN5A|ENSG00000183873.18|sodium voltage-gated channel alpha subunit 5	ENST00000423572.7|SCN5A|ENSG00000183873.18|sodium voltage-gated channel alpha subunit 5
hg38_v1_chr11_+_64291285_64291325	0.20879	GLI3	ENST00000422670.7|KCNK4|ENSG00000182450.13|potassium two pore domain channel subfamily K member 4	ENST00000538767.1|KCNK4|ENSG00000182450.13|potassium two pore domain channel subfamily K member 4
hg38_v1_chr7_+_142511614_142511626	0.207771	GLI3	ENST00000390377.1|TRBV7-7|ENSG00000253291.1|T cell receptor beta variable 7-7
hg38_v1_chr6_-_17987463_17987682	0.207507	GLI3	ENST00000378814.9|KIF13A|ENSG00000137177.20|kinesin family member 13A	ENST00000636847.1|KIF13A|ENSG00000137177.20|kinesin family member 13A	ENST00000378843.6|KIF13A|ENSG00000137177.20|kinesin family member 13A	ENST00000378826.6|KIF13A|ENSG00000137177.20|kinesin family member 13A	ENST00000502704.2|KIF13A|ENSG00000137177.20|kinesin family member 13A	ENST00000259711.11|KIF13A|ENSG00000137177.20|kinesin family member 13A
hg38_v1_chr9_+_32552305_32552346	0.204838	GLI3	ENST00000451672.2|SMIM27|ENSG00000235453.11|small integral membrane protein 27	ENST00000644531.1|SMIM27|ENSG00000235453.11|small integral membrane protein 27
hg38_v1_chr19_+_17226597_17226653	0.204673	GLI3	ENST00000597836.5|OCEL1|ENSG00000099330.9|occludin/ELL domain containing 1
hg38_v1_chr20_-_5316948_5316959	0.203101	GLI3	ENST00000678254.1|PROKR2|ENSG00000101292.8|prokineticin receptor 2
hg38_v1_chr21_-_44928824_44928873	0.202885	GLI3	ENST00000355153.8|ITGB2|ENSG00000160255.18|integrin subunit beta 2	ENST00000397850.6|ITGB2|ENSG00000160255.18|integrin subunit beta 2
hg38_v1_chr9_-_95516959_95517057	0.202875	GLI3	ENST00000437951.6|PTCH1|ENSG00000185920.17|patched 1	ENST00000430669.6|PTCH1|ENSG00000185920.17|patched 1	ENST00000468211.6|PTCH1|ENSG00000185920.17|patched 1
hg38_v1_chr11_+_3797819_3797972	0.202644	GLI3	ENST00000396986.6|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000300730.10|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000396993.8|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000532523.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000459679.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000464229.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000464261.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000490830.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000464906.6|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2	ENST00000464441.5|PGAP2|ENSG00000148985.20|post-GPI attachment to proteins 2
hg38_v1_chr9_+_136952256_136952323	0.202465	GLI3	ENST00000371633.8|LCN12|ENSG00000184925.12|lipocalin 12
hg38_v1_chr19_-_3480512_3480532	0.201947	GLI3	ENST00000215531.6|SMIM24|ENSG00000095932.7|small integral membrane protein 24
hg38_v1_chr2_+_237858874_237858896	0.201794	GLI3	ENST00000404910.6|RAMP1|ENSG00000132329.11|receptor activity modifying protein 1
hg38_v1_chr1_-_58546693_58546802	0.201556	GLI3	ENST00000456980.5|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase	ENST00000482274.2|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase	ENST00000453710.1|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase	ENST00000371226.8|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase	ENST00000419242.5|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase	ENST00000426139.5|OMA1|ENSG00000162600.12|OMA1 zinc metallopeptidase
hg38_v1_chr19_+_35000275_35000338	0.201506	GLI3	ENST00000317991.10|GRAMD1A|ENSG00000089351.15|GRAM domain containing 1A	ENST00000680623.1|GRAMD1A|ENSG00000089351.15|GRAM domain containing 1A
hg38_v1_chr17_-_28549333_28549399	0.201462	GLI3	ENST00000470125.5|UNC119|ENSG00000109103.12|unc-119 lipid binding chaperone
hg38_v1_chr17_+_80415159_80415315	0.200937	GLI3	ENST00000520367.5|ENDOV|ENSG00000173818.17|endonuclease V	ENST00000518137.6|ENDOV|ENSG00000173818.17|endonuclease V	ENST00000523999.5|ENDOV|ENSG00000173818.17|endonuclease V	ENST00000323854.9|ENDOV|ENSG00000173818.17|endonuclease V	ENST00000522751.5|ENDOV|ENSG00000173818.17|endonuclease V
hg38_v1_chr1_-_153565535_153565554	0.1995	GLI3	ENST00000368707.5|S100A2|ENSG00000196754.13|S100 calcium binding protein A2
hg38_v1_chr10_+_86958557_86958631	0.199305	GLI3	ENST00000372017.4|SNCG|ENSG00000173267.14|synuclein gamma	ENST00000348795.8|SNCG|ENSG00000173267.14|synuclein gamma
hg38_v1_chr7_-_51316754_51316825	0.199211	GLI3	ENST00000632460.1|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein	ENST00000441453.5|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein	ENST00000648294.1|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein	ENST00000265136.12|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein	ENST00000395542.6|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein	ENST00000395540.6|COBL|ENSG00000106078.19|cordon-bleu WH2 repeat protein
hg38_v1_chr2_-_74552616_74552695	0.198806	GLI3	ENST00000409249.5|LOXL3|ENSG00000115318.12|lysyl oxidase like 3
hg38_v1_chr1_+_154974672_154974700	0.197777	GLI3	ENST00000308987.6|CKS1B|ENSG00000173207.13|CDC28 protein kinase regulatory subunit 1B	ENST00000368436.1|CKS1B|ENSG00000173207.13|CDC28 protein kinase regulatory subunit 1B
hg38_v1_chr16_+_50693568_50693635	0.196561	GLI3	ENST00000647318.2|NOD2|ENSG00000167207.14|nucleotide binding oligomerization domain containing 2	ENST00000531674.1|NOD2|ENSG00000167207.14|nucleotide binding oligomerization domain containing 2
hg38_v1_chr22_+_39077264_39077293	0.196158	GLI3	ENST00000407997.4|APOBEC3G|ENSG00000239713.9|apolipoprotein B mRNA editing enzyme catalytic subunit 3G
hg38_v1_chr19_+_10106320_10106395	0.195772	GLI3	ENST00000253107.12|PPAN|ENSG00000130810.20|peter pan homolog	ENST00000393796.4|PPAN-P2RY11|ENSG00000243207.6|PPAN-P2RY11 readthrough
hg38_v1_chr2_+_60881515_60881552	0.195698	GLI3	ENST00000295025.12|REL|ENSG00000162924.15|REL proto-oncogene, NF-kB subunit
hg38_v1_chr19_-_51026593_51026633	0.195248	GLI3	ENST00000600362.5|KLK11|ENSG00000167757.14|kallikrein related peptidase 11	ENST00000453757.8|KLK11|ENSG00000167757.14|kallikrein related peptidase 11	ENST00000601671.1|KLK11|ENSG00000167757.14|kallikrein related peptidase 11
hg38_v1_chr6_+_142301854_142301867	0.194749	GLI3	ENST00000230173.10|ADGRG6|ENSG00000112414.15|adhesion G protein-coupled receptor G6	ENST00000367608.6|ADGRG6|ENSG00000112414.15|adhesion G protein-coupled receptor G6
hg38_v1_chrX_-_20218941_20218959	0.194055	GLI3	ENST00000457145.6|RPS6KA3|ENSG00000177189.14|ribosomal protein S6 kinase A3
hg38_v1_chr3_-_165837412_165837430	0.193686	GLI3	ENST00000479451.5|BCHE|ENSG00000114200.10|butyrylcholinesterase	ENST00000488954.1|BCHE|ENSG00000114200.10|butyrylcholinesterase	ENST00000264381.8|BCHE|ENSG00000114200.10|butyrylcholinesterase
hg38_v1_chr17_+_44656429_44656484	0.193421	GLI3	ENST00000409122.7|MEIOC|ENSG00000180336.18|meiosis specific with coiled-coil domain
hg38_v1_chr19_-_1848452_1848489	0.193322	GLI3	ENST00000170168.9|REXO1|ENSG00000079313.15|RNA exonuclease 1 homolog
hg38_v1_chr16_-_4416621_4416632	0.192584	GLI3	ENST00000570645.5|CORO7|ENSG00000262246.6|coronin 7	ENST00000574025.5|CORO7|ENSG00000262246.6|coronin 7	ENST00000572898.1|CORO7|ENSG00000262246.6|coronin 7	ENST00000537233.6|CORO7|ENSG00000262246.6|coronin 7	ENST00000571059.5|CORO7|ENSG00000262246.6|coronin 7
hg38_v1_chr20_+_50190821_50190839	0.192309	GLI3	ENST00000303004.5|CEBPB|ENSG00000172216.6|CCAAT enhancer binding protein beta
hg38_v1_chr17_+_28357638_28357673	0.191735	GLI3	ENST00000292114.8|TMEM199|ENSG00000244045.13|transmembrane protein 199	ENST00000591482.1|ENSG00000258924.4|ENSG00000258924.4|novel transcript readthrough between TMEM199 and SARM1
hg38_v1_chr6_-_109440504_109440663	0.190955	GLI3	ENST00000520723.5|PPIL6|ENSG00000185250.16|peptidylprolyl isomerase like 6	ENST00000518648.1|PPIL6|ENSG00000185250.16|peptidylprolyl isomerase like 6	ENST00000417394.6|PPIL6|ENSG00000185250.16|peptidylprolyl isomerase like 6	ENST00000521072.7|PPIL6|ENSG00000185250.16|peptidylprolyl isomerase like 6
hg38_v1_chr1_-_156500723_156500753	0.190604	GLI3	ENST00000368240.6|MEF2D|ENSG00000116604.18|myocyte enhancer factor 2D
hg38_v1_chr16_+_9091593_9091659	0.190412	GLI3	ENST00000327827.12|C16orf72|ENSG00000182831.12|chromosome 16 open reading frame 72
hg38_v1_chr1_-_39883434_39883512	0.190207	GLI3	ENST00000541099.5|TRIT1|ENSG00000043514.17|tRNA isopentenyltransferase 1	ENST00000441669.6|TRIT1|ENSG00000043514.17|tRNA isopentenyltransferase 1	ENST00000316891.10|TRIT1|ENSG00000043514.17|tRNA isopentenyltransferase 1	ENST00000537440.5|TRIT1|ENSG00000043514.17|tRNA isopentenyltransferase 1	ENST00000372818.5|TRIT1|ENSG00000043514.17|tRNA isopentenyltransferase 1
hg38_v1_chr9_+_109780179_109780256	0.189777	GLI3	ENST00000314527.9|PALM2AKAP2|ENSG00000157654.19|PALM2 and AKAP2 fusion
hg38_v1_chr17_-_17591658_17591723	0.188781	GLI3	ENST00000435340.6|PEMT|ENSG00000133027.18|phosphatidylethanolamine N-methyltransferase	ENST00000255389.10|PEMT|ENSG00000133027.18|phosphatidylethanolamine N-methyltransferase	ENST00000395781.6|PEMT|ENSG00000133027.18|phosphatidylethanolamine N-methyltransferase
hg38_v1_chr17_-_3471739_3471828	0.188395	GLI3	ENST00000268981.9|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000397168.7|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000355380.8|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000571553.5|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000572969.6|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000574797.5|SPATA22|ENSG00000141255.13|spermatogenesis associated 22	ENST00000575375.5|SPATA22|ENSG00000141255.13|spermatogenesis associated 22
hg38_v1_chr3_+_32951636_32951652	0.188287	GLI3	ENST00000330953.6|CCR4|ENSG00000183813.7|C-C motif chemokine receptor 4
hg38_v1_chr17_-_41168219_41168224	0.188015	GLI3	ENST00000391356.4|KRTAP4-3|ENSG00000196156.5|keratin associated protein 4-3
hg38_v1_chr3_-_150703889_150703937	0.186532	GLI3	ENST00000295910.11|ERICH6|ENSG00000163645.15|glutamate rich 6	ENST00000474463.5|ERICH6|ENSG00000163645.15|glutamate rich 6
hg38_v1_chr2_-_136118142_136118155	0.185342	GLI3	ENST00000241393.4|CXCR4|ENSG00000121966.7|C-X-C motif chemokine receptor 4
hg38_v1_chrX_-_130903187_130903217	0.184888	GLI3	ENST00000432489.5|ENOX2|ENSG00000165675.18|ecto-NOX disulfide-thiol exchanger 2	ENST00000394363.6|ENOX2|ENSG00000165675.18|ecto-NOX disulfide-thiol exchanger 2	ENST00000338144.8|ENOX2|ENSG00000165675.18|ecto-NOX disulfide-thiol exchanger 2
hg38_v1_chr1_-_11805949_11805972	0.184588	GLI3	ENST00000376590.9|MTHFR|ENSG00000177000.13|methylenetetrahydrofolate reductase
hg38_v1_chr16_+_30023198_30023401	0.184326	GLI3	ENST00000681219.1|C16orf92|ENSG00000167194.8|chromosome 16 open reading frame 92	ENST00000300575.6|C16orf92|ENSG00000167194.8|chromosome 16 open reading frame 92
hg38_v1_chr21_-_32612806_32612881	0.18426	GLI3	ENST00000673807.1|CFAP298-TCP10L|ENSG00000265590.10|CFAP298-TCP10L readthrough
hg38_v1_chr16_+_56191476_56191508	0.183839	GLI3	ENST00000262493.12|GNAO1|ENSG00000087258.16|G protein subunit alpha o1
hg38_v1_chr1_-_84574407_84574485	0.18369	GLI3	ENST00000370630.6|CTBS|ENSG00000117151.13|chitobiase
hg38_v1_chr16_+_84176067_84176141	0.183633	GLI3	ENST00000564928.1|DNAAF1|ENSG00000154099.18|dynein axonemal assembly factor 1
hg38_v1_chr3_-_185499022_185499042	0.183619	GLI3	ENST00000421852.6|TMEM41A|ENSG00000163900.11|transmembrane protein 41A
hg38_v1_chr11_+_69294107_69294181	0.183548	GLI3	ENST00000441339.3|MYEOV|ENSG00000172927.8|myeloma overexpressed	ENST00000308946.3|MYEOV|ENSG00000172927.8|myeloma overexpressed	ENST00000535407.1|MYEOV|ENSG00000172927.8|myeloma overexpressed
hg38_v1_chr16_-_84504612_84504683	0.18293	GLI3	ENST00000562447.5|MEAK7|ENSG00000140950.16|MTOR associated protein, eak-7 homolog	ENST00000343629.11|MEAK7|ENSG00000140950.16|MTOR associated protein, eak-7 homolog	ENST00000565765.1|MEAK7|ENSG00000140950.16|MTOR associated protein, eak-7 homolog
hg38_v1_chr5_+_136028979_136029001	0.182119	GLI3	ENST00000442011.7|TGFBI|ENSG00000120708.17|transforming growth factor beta induced
hg38_v1_chr3_+_9933805_9933869	0.182026	GLI3	ENST00000684493.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000673935.2|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000684181.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000683189.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000383811.8|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000452070.6|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000682642.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000684659.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000491527.2|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000326434.9|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000682783.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000683835.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1	ENST00000682570.1|CRELD1|ENSG00000163703.20|cysteine rich with EGF like domains 1
hg38_v1_chr14_+_104745960_104746056	0.181947	GLI3	ENST00000556623.1|ADSS1|ENSG00000185100.11|adenylosuccinate synthase 1	ENST00000555674.1|ADSS1|ENSG00000185100.11|adenylosuccinate synthase 1
hg38_v1_chr10_+_18659382_18659519	0.181904	GLI3	ENST00000377275.4|ARL5B|ENSG00000165997.5|ADP ribosylation factor like GTPase 5B
hg38_v1_chr19_+_16661121_16661261	0.181428	GLI3	ENST00000187762.7|TMEM38A|ENSG00000072954.7|transmembrane protein 38A	ENST00000599479.1|TMEM38A|ENSG00000072954.7|transmembrane protein 38A
hg38_v1_chr21_-_34888683_34888714	0.18114	GLI3	ENST00000344691.8|RUNX1|ENSG00000159216.19|RUNX family transcription factor 1	ENST00000358356.9|RUNX1|ENSG00000159216.19|RUNX family transcription factor 1
hg38_v1_chr12_-_56636318_56636389	0.180332	GLI3	ENST00000549506.5|BAZ2A|ENSG00000076108.12|bromodomain adjacent to zinc finger domain 2A	ENST00000379441.7|BAZ2A|ENSG00000076108.12|bromodomain adjacent to zinc finger domain 2A	ENST00000551812.5|BAZ2A|ENSG00000076108.12|bromodomain adjacent to zinc finger domain 2A
hg38_v1_chr18_-_47029842_47029842	0.17903	GLI3	ENST00000674825.1|ENSG00000288631.1|ENSG00000288631.1|elongin A3
hg38_v1_chr1_-_46941464_46941483	0.178854	GLI3	ENST00000462347.5|CYP4A11|ENSG00000187048.13|cytochrome P450 family 4 subfamily A member 11	ENST00000371905.1|CYP4A11|ENSG00000187048.13|cytochrome P450 family 4 subfamily A member 11	ENST00000310638.9|CYP4A11|ENSG00000187048.13|cytochrome P450 family 4 subfamily A member 11
hg38_v1_chrX_-_130903224_130903261	0.178641	GLI3	ENST00000370935.5|ENOX2|ENSG00000165675.18|ecto-NOX disulfide-thiol exchanger 2
hg38_v1_chr1_-_8026283_8026317	0.178487	GLI3	ENST00000474874.5|ERRFI1|ENSG00000116285.13|ERBB receptor feedback inhibitor 1	ENST00000469499.5|ERRFI1|ENSG00000116285.13|ERBB receptor feedback inhibitor 1	ENST00000377482.10|ERRFI1|ENSG00000116285.13|ERBB receptor feedback inhibitor 1
hg38_v1_chr1_+_180912876_180912920	0.177961	GLI3	ENST00000367588.9|KIAA1614|ENSG00000135835.12|KIAA1614
hg38_v1_chr6_-_33580229_33580310	0.177741	GLI3	ENST00000374467.4|BAK1|ENSG00000030110.13|BCL2 antagonist/killer 1	ENST00000442998.6|BAK1|ENSG00000030110.13|BCL2 antagonist/killer 1	ENST00000360661.9|BAK1|ENSG00000030110.13|BCL2 antagonist/killer 1
hg38_v1_chr11_-_61878582_61878641	0.177546	GLI3	ENST00000527379.5|FADS3|ENSG00000221968.9|fatty acid desaturase 3
hg38_v1_chr12_-_31324129_31324182	0.1774	GLI3	ENST00000454658.6|SINHCAF|ENSG00000139146.14|SIN3-HDAC complex associated factor
hg38_v1_chr7_-_128405930_128405973	0.177265	GLI3	ENST00000470772.5|IMPDH1|ENSG00000106348.18|inosine monophosphate dehydrogenase 1	ENST00000480861.5|IMPDH1|ENSG00000106348.18|inosine monophosphate dehydrogenase 1	ENST00000496200.5|IMPDH1|ENSG00000106348.18|inosine monophosphate dehydrogenase 1
hg38_v1_chr19_-_34677157_34677161	0.17672	GLI3	ENST00000601241.6|SCGB2B2|ENSG00000205209.8|secretoglobin family 2B member 2
hg38_v1_chr19_+_6887560_6887598	0.176532	GLI3	ENST00000250572.12|ADGRE1|ENSG00000174837.15|adhesion G protein-coupled receptor E1	ENST00000381407.9|ADGRE1|ENSG00000174837.15|adhesion G protein-coupled receptor E1	ENST00000450315.7|ADGRE1|ENSG00000174837.15|adhesion G protein-coupled receptor E1	ENST00000312053.9|ADGRE1|ENSG00000174837.15|adhesion G protein-coupled receptor E1	ENST00000381404.8|ADGRE1|ENSG00000174837.15|adhesion G protein-coupled receptor E1
hg38_v1_chr1_-_39639626_39639654	0.176401	GLI3	ENST00000372852.4|HEYL|ENSG00000163909.8|hes related family bHLH transcription factor with YRPW motif like
hg38_v1_chr19_-_38735405_38735431	0.175768	GLI3	ENST00000597987.5|CAPN12|ENSG00000182472.9|calpain 12	ENST00000595177.1|CAPN12|ENSG00000182472.9|calpain 12
hg38_v1_chr21_-_32612339_32612416	0.175082	GLI3	ENST00000440966.5|CFAP298|ENSG00000159079.19|cilia and flagella associated protein 298	ENST00000290155.8|CFAP298|ENSG00000159079.19|cilia and flagella associated protein 298
hg38_v1_chrX_+_55000329_55000398	0.174932	GLI3	ENST00000374987.4|APEX2|ENSG00000169188.5|apurinic/apyrimidinic endodeoxyribonuclease 2
hg38_v1_chr17_+_14069489_14069547	0.174394	GLI3	ENST00000429152.6|COX10|ENSG00000006695.12|cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10	ENST00000261643.8|COX10|ENSG00000006695.12|cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10
hg38_v1_chrX_+_30215551_30215586	0.173853	GLI3	ENST00000378988.5|MAGEB2|ENSG00000099399.6|MAGE family member B2
hg38_v1_chr8_+_132919403_132919440	0.173774	GLI3	ENST00000519178.5|TG|ENSG00000042832.12|thyroglobulin
hg38_v1_chr17_-_63842663_63842751	0.173567	GLI3	ENST00000613943.4|SMARCD2|ENSG00000108604.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	ENST00000448276.7|SMARCD2|ENSG00000108604.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
hg38_v1_chr11_+_1410443_1410475	0.173308	GLI3	ENST00000528710.5|BRSK2|ENSG00000174672.16|BR serine/threonine kinase 2
hg38_v1_chr1_-_54764482_54764551	0.173156	GLI3	ENST00000371279.4|PARS2|ENSG00000162396.6|prolyl-tRNA synthetase 2, mitochondrial
hg38_v1_chr18_-_47023927_47023927	0.172224	GLI3	ENST00000675219.1|ENSG00000288607.1|ENSG00000288607.1|elongin A3 family member B
hg38_v1_chr1_-_156500763_156500851	0.170384	GLI3	ENST00000348159.9|MEF2D|ENSG00000116604.18|myocyte enhancer factor 2D	ENST00000489057.1|MEF2D|ENSG00000116604.18|myocyte enhancer factor 2D
hg38_v1_chr17_-_6831716_6831749	0.170135	GLI3	ENST00000338694.7|TEKT1|ENSG00000167858.13|tektin 1
hg38_v1_chr11_+_60056653_60056688	0.169993	GLI3	ENST00000278865.8|MS4A3|ENSG00000149516.14|membrane spanning 4-domains A3
hg38_v1_chr17_+_28744034_28744085	0.169452	GLI3	ENST00000444415.7|TRAF4|ENSG00000076604.15|TNF receptor associated factor 4	ENST00000262396.10|TRAF4|ENSG00000076604.15|TNF receptor associated factor 4
hg38_v1_chr7_+_77537258_77537355	0.169415	GLI3	ENST00000248594.11|PTPN12|ENSG00000127947.16|protein tyrosine phosphatase non-receptor type 12
hg38_v1_chr10_-_74163_74163	0.169162	GLI3	ENST00000564130.2|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII
hg38_v1_chr21_-_32612577_32612593	0.168599	GLI3	ENST00000673985.1|CFAP298-TCP10L|ENSG00000265590.10|CFAP298-TCP10L readthrough	ENST00000382549.8|CFAP298|ENSG00000159079.19|cilia and flagella associated protein 298
hg38_v1_chrX_-_53225176_53225225	0.168389	GLI3	ENST00000404049.7|KDM5C|ENSG00000126012.12|lysine demethylase 5C	ENST00000375401.8|KDM5C|ENSG00000126012.12|lysine demethylase 5C
hg38_v1_chr9_-_93134234_93134258	0.168094	GLI3	ENST00000375446.5|NINJ1|ENSG00000131669.10|ninjurin 1
hg38_v1_chr18_+_24014390_24014452	0.168084	GLI3	ENST00000584250.1|TTC39C|ENSG00000168234.13|tetratricopeptide repeat domain 39C
hg38_v1_chr17_+_15945101_15945139	0.167722	GLI3	ENST00000304222.3|ADORA2B|ENSG00000170425.4|adenosine A2b receptor
hg38_v1_chr5_+_173989160_173989184	0.167682	GLI3	ENST00000340147.7|C5orf47|ENSG00000185056.10|chromosome 5 open reading frame 47
hg38_v1_chr19_+_44748673_44748749	0.16764	GLI3	ENST00000164227.10|BCL3|ENSG00000069399.15|BCL3 transcription coactivator
hg38_v1_chr8_+_30095400_30095501	0.167363	GLI3	ENST00000321250.13|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1	ENST00000518001.1|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1	ENST00000520682.5|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1	ENST00000442880.6|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1	ENST00000523116.5|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1
hg38_v1_chr22_+_20965108_20965164	0.167259	GLI3	ENST00000399167.6|AIFM3|ENSG00000183773.16|apoptosis inducing factor mitochondria associated 3	ENST00000399163.6|AIFM3|ENSG00000183773.16|apoptosis inducing factor mitochondria associated 3
hg38_v1_chr2_+_241188509_241188535	0.166689	GLI3	ENST00000674324.1|ANO7|ENSG00000146205.14|anoctamin 7	ENST00000274979.12|ANO7|ENSG00000146205.14|anoctamin 7
hg38_v1_chr16_+_57694788_57694836	0.166009	GLI3	ENST00000569375.5|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7	ENST00000569167.1|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7	ENST00000394337.8|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7	ENST00000360716.8|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7	ENST00000563126.5|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7	ENST00000336825.12|DRC7|ENSG00000159625.15|dynein regulatory complex subunit 7
hg38_v1_chr3_-_129183874_129183928	0.16535	GLI3	ENST00000422453.7|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000451728.6|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000446936.6|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000502976.5|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000500450.6|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000441626.6|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000504813.5|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein	ENST00000512338.1|CNBP|ENSG00000169714.17|CCHC-type zinc finger nucleic acid binding protein
hg38_v1_chr19_-_12775513_12775620	0.165165	GLI3	ENST00000397668.8|HOOK2|ENSG00000095066.12|hook microtubule tethering protein 2	ENST00000587178.1|HOOK2|ENSG00000095066.12|hook microtubule tethering protein 2	ENST00000264827.9|HOOK2|ENSG00000095066.12|hook microtubule tethering protein 2
hg38_v1_chr3_-_197298558_197298667	0.163865	GLI3	ENST00000656944.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000346964.6|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000448528.6|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000655488.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000357674.9|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000667157.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000661336.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000654737.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000659716.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000657381.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1
hg38_v1_chr8_+_143246821_143247110	0.16369	GLI3	ENST00000520584.6|ZFP41|ENSG00000181638.20|ZFP41 zinc finger protein	ENST00000330701.7|ZFP41|ENSG00000181638.20|ZFP41 zinc finger protein	ENST00000522452.2|ENSG00000264668.2|ENSG00000264668.2|novel protein
hg38_v1_chr17_+_37489882_37489900	0.162988	GLI3	ENST00000617516.5|DUSP14|ENSG00000276023.5|dual specificity phosphatase 14
hg38_v1_chr2_+_170816868_170816901	0.162614	GLI3	ENST00000358196.8|GAD1|ENSG00000128683.14|glutamate decarboxylase 1
hg38_v1_chr1_+_18630839_18630881	0.162096	GLI3	ENST00000420770.7|PAX7|ENSG00000009709.12|paired box 7
hg38_v1_chr10_+_104269163_104269200	0.161863	GLI3	ENST00000338595.7|GSTO2|ENSG00000065621.15|glutathione S-transferase omega 2
hg38_v1_chr3_-_197299067_197299158	0.161772	GLI3	ENST00000663148.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1
hg38_v1_chr7_-_150341615_150341669	0.161545	GLI3	ENST00000223271.8|RARRES2|ENSG00000106538.10|retinoic acid receptor responder 2	ENST00000466675.5|RARRES2|ENSG00000106538.10|retinoic acid receptor responder 2	ENST00000482669.1|RARRES2|ENSG00000106538.10|retinoic acid receptor responder 2	ENST00000467793.5|RARRES2|ENSG00000106538.10|retinoic acid receptor responder 2
hg38_v1_chr2_+_60881553_60881619	0.161399	GLI3	ENST00000394479.4|REL|ENSG00000162924.15|REL proto-oncogene, NF-kB subunit
hg38_v1_chr21_-_44910630_44910826	0.160937	GLI3	ENST00000320216.10|ITGB2|ENSG00000160255.18|integrin subunit beta 2	ENST00000397852.5|ITGB2|ENSG00000160255.18|integrin subunit beta 2
hg38_v1_chr11_+_1919694_1919748	0.160926	GLI3	ENST00000278317.11|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000453458.5|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000381557.6|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000381579.7|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000381589.7|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000381563.8|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000344578.8|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type	ENST00000381558.6|TNNT3|ENSG00000130595.19|troponin T3, fast skeletal type
hg38_v1_chr11_+_60429567_60429576	0.160862	GLI3	ENST00000300190.7|MS4A5|ENSG00000166930.7|membrane spanning 4-domains A5
hg38_v1_chr2_+_26692686_26692767	0.160842	GLI3	ENST00000620977.1|KCNK3|ENSG00000171303.7|potassium two pore domain channel subfamily K member 3	ENST00000302909.4|KCNK3|ENSG00000171303.7|potassium two pore domain channel subfamily K member 3
hg38_v1_chr6_-_20212403_20212495	0.158424	GLI3	ENST00000324607.8|MBOAT1|ENSG00000172197.11|membrane bound O-acyltransferase domain containing 1
hg38_v1_chrX_+_41447322_41447434	0.158354	GLI3	ENST00000378220.2|NYX|ENSG00000188937.6|nyctalopin	ENST00000342595.2|NYX|ENSG00000188937.6|nyctalopin
hg38_v1_chr12_-_124863783_124863873	0.158276	GLI3	ENST00000546215.5|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1	ENST00000415380.6|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1	ENST00000545493.1|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1	ENST00000261693.11|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1	ENST00000680596.1|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1
hg38_v1_chr12_-_124863902_124863926	0.158017	GLI3	ENST00000339570.9|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1	ENST00000680556.1|SCARB1|ENSG00000073060.17|scavenger receptor class B member 1
hg38_v1_chr9_-_95509241_95509273	0.157316	GLI3	ENST00000331920.11|PTCH1|ENSG00000185920.17|patched 1
hg38_v1_chr10_+_79706328_79706328	0.157138	GLI3	ENST00000342531.2|NUTM2B|ENSG00000188199.10|NUT family member 2B
hg38_v1_chr11_+_124865425_124865465	0.156904	GLI3	ENST00000397801.6|ROBO3|ENSG00000154134.15|roundabout guidance receptor 3
hg38_v1_chr16_+_4476340_4476459	0.156236	GLI3	ENST00000458134.7|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000619528.4|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000619913.4|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000219700.10|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000570646.6|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000575120.5|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000572812.5|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000574466.5|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000576827.5|HMOX2|ENSG00000103415.12|heme oxygenase 2	ENST00000570445.5|HMOX2|ENSG00000103415.12|heme oxygenase 2
hg38_v1_chr17_-_27800524_27800530	0.155579	GLI3	ENST00000313735.11|NOS2|ENSG00000007171.18|nitric oxide synthase 2
hg38_v1_chr19_-_18941184_18941264	0.154712	GLI3	ENST00000594794.5|HOMER3|ENSG00000051128.19|homer scaffold protein 3	ENST00000392351.8|HOMER3|ENSG00000051128.19|homer scaffold protein 3	ENST00000596482.5|HOMER3|ENSG00000051128.19|homer scaffold protein 3
hg38_v1_chr20_-_37158904_37158904	0.154682	GLI3	ENST00000417458.5|MROH8|ENSG00000101353.15|maestro heat like repeat family member 8
hg38_v1_chr22_-_50527689_50527726	0.154634	GLI3	ENST00000652401.1|TYMP|ENSG00000025708.14|thymidine phosphorylase
hg38_v1_chrX_-_7927701_7927739	0.154521	GLI3	ENST00000537427.5|PNPLA4|ENSG00000006757.12|patatin like phospholipase domain containing 4	ENST00000444736.5|PNPLA4|ENSG00000006757.12|patatin like phospholipase domain containing 4	ENST00000442940.1|PNPLA4|ENSG00000006757.12|patatin like phospholipase domain containing 4
hg38_v1_chr7_+_1086800_1086876	0.153335	GLI3	ENST00000413368.5|GPER1|ENSG00000164850.15|G protein-coupled estrogen receptor 1	ENST00000397092.5|GPER1|ENSG00000164850.15|G protein-coupled estrogen receptor 1	ENST00000297469.3|GPER1|ENSG00000164850.15|G protein-coupled estrogen receptor 1
hg38_v1_chr2_-_219571529_219571560	0.152464	GLI3	ENST00000404537.6|OBSL1|ENSG00000124006.15|obscurin like cytoskeletal adaptor 1
hg38_v1_chr18_-_46964408_46964408	0.152003	GLI3	ENST00000676383.1|ENSG00000288616.1|ENSG00000288616.1|elongin A3 family member D
hg38_v1_chr11_+_68460712_68460813	0.151449	GLI3	ENST00000528635.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000533127.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000529907.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000529344.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000534534.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000524845.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000393800.7|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000265637.8|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000524904.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000393801.7|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000265636.9|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3	ENST00000529710.5|PPP6R3|ENSG00000110075.15|protein phosphatase 6 regulatory subunit 3
hg38_v1_chrX_+_44873169_44873204	0.151312	GLI3	ENST00000675577.1|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000674867.1|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000674586.1|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000382899.9|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000536777.6|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000543216.6|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000377967.9|KDM6A|ENSG00000147050.17|lysine demethylase 6A	ENST00000611820.5|KDM6A|ENSG00000147050.17|lysine demethylase 6A
hg38_v1_chr15_-_101652365_101652394	0.149641	GLI3	ENST00000428002.6|TM2D3|ENSG00000184277.13|TM2 domain containing 3	ENST00000333202.8|TM2D3|ENSG00000184277.13|TM2 domain containing 3	ENST00000559107.5|TM2D3|ENSG00000184277.13|TM2 domain containing 3	ENST00000347970.7|TM2D3|ENSG00000184277.13|TM2 domain containing 3
hg38_v1_chr11_-_123885627_123885672	0.149253	GLI3	ENST00000528595.1|TMEM225|ENSG00000204300.7|transmembrane protein 225	ENST00000375026.7|TMEM225|ENSG00000204300.7|transmembrane protein 225
hg38_v1_chr11_-_119381629_119381711	0.147601	GLI3	ENST00000260187.7|USP2|ENSG00000036672.16|ubiquitin specific peptidase 2	ENST00000455332.6|USP2|ENSG00000036672.16|ubiquitin specific peptidase 2
hg38_v1_chr21_+_33229883_33229993	0.147425	GLI3	ENST00000382264.7|IFNAR2|ENSG00000159110.21|interferon alpha and beta receptor subunit 2	ENST00000342136.9|IFNAR2|ENSG00000159110.21|interferon alpha and beta receptor subunit 2	ENST00000404220.7|IFNAR2|ENSG00000159110.21|interferon alpha and beta receptor subunit 2
hg38_v1_chr1_-_10964201_10964201	0.146486	GLI3	ENST00000418570.6|C1orf127|ENSG00000175262.14|chromosome 1 open reading frame 127
hg38_v1_chr11_-_74731385_74731436	0.145219	GLI3	ENST00000622063.4|CHRDL2|ENSG00000054938.16|chordin like 2	ENST00000376332.8|CHRDL2|ENSG00000054938.16|chordin like 2
hg38_v1_chr1_-_11805977_11806063	0.144986	GLI3	ENST00000376486.3|MTHFR|ENSG00000177000.13|methylenetetrahydrofolate reductase
hg38_v1_chr9_-_33264678_33264743	0.143844	GLI3	ENST00000635077.1|BAG1|ENSG00000107262.26|BAG cochaperone 1	ENST00000634734.3|BAG1|ENSG00000107262.26|BAG cochaperone 1
hg38_v1_chr11_+_2461432_2461446	0.143711	GLI3	ENST00000335475.6|KCNQ1|ENSG00000053918.18|potassium voltage-gated channel subfamily Q member 1
hg38_v1_chr19_-_19643547_19643561	0.143505	GLI3	ENST00000587238.5|GMIP|ENSG00000089639.11|GEM interacting protein
hg38_v1_chr19_-_41428730_41428730	0.14337	GLI3	ENST00000321702.2|B3GNT8|ENSG00000177191.2|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
hg38_v1_chr20_+_59933761_59933818	0.143209	GLI3	ENST00000358293.7|FAM217B|ENSG00000196227.11|family with sequence similarity 217 member B
hg38_v1_chrX_-_8801337_8801383	0.142763	GLI3	ENST00000543214.1|FAM9A|ENSG00000183304.10|family with sequence similarity 9 member A	ENST00000381003.7|FAM9A|ENSG00000183304.10|family with sequence similarity 9 member A
hg38_v1_chr10_-_14838561_14838599	0.1427	GLI3	ENST00000378442.5|CDNF|ENSG00000185267.10|cerebral dopamine neurotrophic factor
hg38_v1_chr1_+_234373667_234373701	0.142421	GLI3	ENST00000366613.1|COA6|ENSG00000168275.16|cytochrome c oxidase assembly factor 6	ENST00000366612.1|COA6|ENSG00000168275.16|cytochrome c oxidase assembly factor 6
hg38_v1_chr8_+_22042382_22042398	0.142418	GLI3	ENST00000518533.5|FGF17|ENSG00000158815.11|fibroblast growth factor 17
hg38_v1_chr19_+_2096960_2097009	0.142416	GLI3	ENST00000588003.5|IZUMO4|ENSG00000099840.14|IZUMO family member 4
hg38_v1_chr6_-_159000174_159000222	0.142289	GLI3	ENST00000367069.7|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr19_-_53267723_53267723	0.141656	GLI3	ENST00000311170.5|VN1R4|ENSG00000228567.3|vomeronasal 1 receptor 4
hg38_v1_chr7_-_102616692_102616756	0.141384	GLI3	ENST00000521076.5|RASA4|ENSG00000105808.18|RAS p21 protein activator 4	ENST00000462172.5|RASA4|ENSG00000105808.18|RAS p21 protein activator 4	ENST00000522801.5|RASA4|ENSG00000105808.18|RAS p21 protein activator 4	ENST00000262940.12|RASA4|ENSG00000105808.18|RAS p21 protein activator 4	ENST00000449970.6|RASA4|ENSG00000105808.18|RAS p21 protein activator 4
hg38_v1_chr5_-_180591488_180591505	0.141345	GLI3	ENST00000292641.4|SCGB3A1|ENSG00000161055.4|secretoglobin family 3A member 1
hg38_v1_chr2_-_47155277_47155292	0.141195	GLI3	ENST00000294947.2|STPG4|ENSG00000239605.11|sperm-tail PG-rich repeat containing 4
hg38_v1_chr11_-_59668981_59669056	0.14115	GLI3	ENST00000300146.10|PATL1|ENSG00000166889.14|PAT1 homolog 1, processing body mRNA decay factor
hg38_v1_chr3_-_12158901_12158932	0.140808	GLI3	ENST00000287814.5|TIMP4|ENSG00000157150.5|TIMP metallopeptidase inhibitor 4
hg38_v1_chr5_-_142698004_142698070	0.140652	GLI3	ENST00000407758.5|FGF1|ENSG00000113578.18|fibroblast growth factor 1	ENST00000441680.6|FGF1|ENSG00000113578.18|fibroblast growth factor 1	ENST00000419524.6|FGF1|ENSG00000113578.18|fibroblast growth factor 1	ENST00000621536.4|FGF1|ENSG00000113578.18|fibroblast growth factor 1
hg38_v1_chr17_-_28951443_28951606	0.140473	GLI3	ENST00000268756.7|PHF12|ENSG00000109118.14|PHD finger protein 12	ENST00000332830.9|PHF12|ENSG00000109118.14|PHD finger protein 12	ENST00000584685.1|PHF12|ENSG00000109118.14|PHD finger protein 12
hg38_v1_chr17_+_74274241_74274281	0.139194	GLI3	ENST00000582036.5|DNAI2|ENSG00000171595.14|dynein axonemal intermediate chain 2
hg38_v1_chr17_+_6651745_6651776	0.139111	GLI3	ENST00000542475.3|C17orf100|ENSG00000256806.6|chromosome 17 open reading frame 100
hg38_v1_chr3_+_4493340_4493356	0.138881	GLI3	ENST00000357086.10|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000354582.12|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000649015.2|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000467056.6|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1
hg38_v1_chr3_+_42149222_42149296	0.138227	GLI3	ENST00000449246.5|TRAK1|ENSG00000182606.17|trafficking kinesin protein 1	ENST00000613405.4|TRAK1|ENSG00000182606.17|trafficking kinesin protein 1
hg38_v1_chr4_+_73869385_73869400	0.138059	GLI3	ENST00000395761.4|CXCL1|ENSG00000163739.5|C-X-C motif chemokine ligand 1
hg38_v1_chr6_-_158999748_158999839	0.138024	GLI3	ENST00000449822.5|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr9_-_98708856_98708975	0.13755	GLI3	ENST00000259455.4|GABBR2|ENSG00000136928.7|gamma-aminobutyric acid type B receptor subunit 2
hg38_v1_chr17_-_48615261_48615297	0.13754	GLI3	ENST00000239144.5|HOXB8|ENSG00000120068.7|homeobox B8
hg38_v1_chr2_+_96325294_96325355	0.136963	GLI3	ENST00000439118.3|ITPRIPL1|ENSG00000198885.10|ITPRIP like 1	ENST00000420176.5|ITPRIPL1|ENSG00000198885.10|ITPRIP like 1	ENST00000536814.1|ITPRIPL1|ENSG00000198885.10|ITPRIP like 1
hg38_v1_chr11_-_119317119_119317137	0.136886	GLI3	ENST00000264036.6|MCAM|ENSG00000076706.17|melanoma cell adhesion molecule
hg38_v1_chr19_-_43781249_43781294	0.136853	GLI3	ENST00000615047.4|KCNN4|ENSG00000104783.14|potassium calcium-activated channel subfamily N member 4
hg38_v1_chr12_+_65169546_65169593	0.136825	GLI3	ENST00000308330.3|LEMD3|ENSG00000174106.3|LEM domain containing 3
hg38_v1_chr4_+_71187258_71187259	0.136574	GLI3	ENST00000264485.11|SLC4A4|ENSG00000080493.18|solute carrier family 4 member 4
hg38_v1_chr19_-_14518383_14518407	0.135423	GLI3	ENST00000254322.3|DNAJB1|ENSG00000132002.9|DnaJ heat shock protein family (Hsp40) member B1	ENST00000595139.2|DNAJB1|ENSG00000132002.9|DnaJ heat shock protein family (Hsp40) member B1
hg38_v1_chr2_+_227871618_227871682	0.135067	GLI3	ENST00000309931.3|DAW1|ENSG00000123977.10|dynein assembly factor with WD repeats 1	ENST00000440997.1|DAW1|ENSG00000123977.10|dynein assembly factor with WD repeats 1
hg38_v1_chr6_-_35512863_35512876	0.134693	GLI3	ENST00000428978.1|TULP1|ENSG00000112041.13|TUB like protein 1	ENST00000614066.4|TULP1|ENSG00000112041.13|TUB like protein 1	ENST00000322263.8|TULP1|ENSG00000112041.13|TUB like protein 1
hg38_v1_chrX_-_48411910_48411960	0.134349	GLI3	ENST00000619890.1|SSX4B|ENSG00000269791.6|SSX family member 4B	ENST00000595235.6|SSX4B|ENSG00000269791.6|SSX family member 4B
hg38_v1_chr1_+_160796098_160796113	0.134332	GLI3	ENST00000392203.8|LY9|ENSG00000122224.18|lymphocyte antigen 9
hg38_v1_chr3_+_15427551_15427634	0.134028	GLI3	ENST00000396842.7|EAF1|ENSG00000144597.14|ELL associated factor 1
hg38_v1_chr16_+_80540980_80541030	0.133392	GLI3	ENST00000568035.5|DYNLRB2|ENSG00000168589.15|dynein light chain roadblock-type 2	ENST00000305904.11|DYNLRB2|ENSG00000168589.15|dynein light chain roadblock-type 2
hg38_v1_chr17_+_4833331_4833425	0.132832	GLI3	ENST00000355280.11|MINK1|ENSG00000141503.17|misshapen like kinase 1	ENST00000347992.11|MINK1|ENSG00000141503.17|misshapen like kinase 1
hg38_v1_chr4_-_973532_973590	0.132224	GLI3	ENST00000273814.8|DGKQ|ENSG00000145214.14|diacylglycerol kinase theta
hg38_v1_chr17_-_7404039_7404105	0.132115	GLI3	ENST00000576017.1|TMEM256|ENSG00000205544.4|transmembrane protein 256	ENST00000302422.4|TMEM256|ENSG00000205544.4|transmembrane protein 256
hg38_v1_chr2_-_72825982_72826052	0.132048	GLI3	ENST00000634650.1|EXOC6B|ENSG00000144036.16|exocyst complex component 6B	ENST00000272427.11|EXOC6B|ENSG00000144036.16|exocyst complex component 6B	ENST00000410104.1|EXOC6B|ENSG00000144036.16|exocyst complex component 6B
hg38_v1_chr22_-_42270587_42270667	0.131781	GLI3	ENST00000677622.1|TCF20|ENSG00000100207.21|transcription factor 20
hg38_v1_chr1_+_180928133_180928159	0.13135	GLI3	ENST00000367587.1|KIAA1614|ENSG00000135835.12|KIAA1614
hg38_v1_chr10_-_75401746_75401772	0.131129	GLI3	ENST00000372524.5|ZNF503|ENSG00000165655.17|zinc finger protein 503
hg38_v1_chr16_-_2009797_2009835	0.130812	GLI3	ENST00000563630.6|ZNF598|ENSG00000167962.14|zinc finger protein 598, E3 ubiquitin ligase	ENST00000562103.2|ZNF598|ENSG00000167962.14|zinc finger protein 598, E3 ubiquitin ligase
hg38_v1_chr5_-_73565602_73565653	0.130231	GLI3	ENST00000296785.8|ANKRA2|ENSG00000164331.10|ankyrin repeat family A member 2
hg38_v1_chr9_+_133061981_133061981	0.130205	GLI3	ENST00000372080.8|CEL|ENSG00000170835.17|carboxyl ester lipase
hg38_v1_chr6_+_10887036_10887095	0.130054	GLI3	ENST00000283141.11|SYCP2L|ENSG00000153157.13|synaptonemal complex protein 2 like
hg38_v1_chr11_-_71928624_71928671	0.129388	GLI3	ENST00000533047.5|ENSG00000254469.9|ENSG00000254469.9|novel protein similar to transient receptor potential cation channel, subfamily C, member 2 TRPC2	ENST00000529844.5|ENSG00000254469.9|ENSG00000254469.9|novel protein similar to transient receptor potential cation channel, subfamily C, member 2 TRPC2
hg38_v1_chr3_+_23805941_23806054	0.129237	GLI3	ENST00000306627.8|UBE2E1|ENSG00000170142.12|ubiquitin conjugating enzyme E2 E1	ENST00000346855.7|UBE2E1|ENSG00000170142.12|ubiquitin conjugating enzyme E2 E1
hg38_v1_chrX_+_48383516_48383546	0.129135	GLI3	ENST00000620320.4|SSX4|ENSG00000268009.6|SSX family member 4	ENST00000595689.3|SSX4|ENSG00000268009.6|SSX family member 4
hg38_v1_chr11_+_22193119_22193131	0.129047	GLI3	ENST00000683437.1|ANO5|ENSG00000171714.13|anoctamin 5
hg38_v1_chr17_+_28744002_28744033	0.128611	GLI3	ENST00000618771.1|TRAF4|ENSG00000076604.15|TNF receptor associated factor 4	ENST00000262395.10|TRAF4|ENSG00000076604.15|TNF receptor associated factor 4	ENST00000422344.5|TRAF4|ENSG00000076604.15|TNF receptor associated factor 4
hg38_v1_chr19_+_4969105_4969132	0.128558	GLI3	ENST00000611640.4|KDM4B|ENSG00000127663.15|lysine demethylase 4B	ENST00000159111.9|KDM4B|ENSG00000127663.15|lysine demethylase 4B	ENST00000588337.5|KDM4B|ENSG00000127663.15|lysine demethylase 4B	ENST00000381759.8|KDM4B|ENSG00000127663.15|lysine demethylase 4B
hg38_v1_chr22_-_19524400_19524416	0.128214	GLI3	ENST00000618236.2|CLDN5|ENSG00000184113.10|claudin 5
hg38_v1_chr7_-_105522264_105522279	0.128135	GLI3	ENST00000469408.6|PUS7|ENSG00000091127.14|pseudouridine synthase 7
hg38_v1_chr20_-_45791865_45791891	0.127896	GLI3	ENST00000243938.9|WFDC3|ENSG00000124116.19|WAP four-disulfide core domain 3
hg38_v1_chr19_+_2096937_2096951	0.126775	GLI3	ENST00000395296.5|IZUMO4|ENSG00000099840.14|IZUMO family member 4
hg38_v1_chr17_+_32927910_32927932	0.126045	GLI3	ENST00000394642.7|TMEM98|ENSG00000006042.12|transmembrane protein 98
hg38_v1_chr16_+_70454577_70454727	0.126004	GLI3	ENST00000572784.5|FCSK|ENSG00000157353.17|fucose kinase	ENST00000574784.5|FCSK|ENSG00000157353.17|fucose kinase	ENST00000571514.5|FCSK|ENSG00000157353.17|fucose kinase	ENST00000288078.11|FCSK|ENSG00000157353.17|fucose kinase	ENST00000378912.6|FCSK|ENSG00000157353.17|fucose kinase	ENST00000573352.5|FCSK|ENSG00000157353.17|fucose kinase	ENST00000576453.1|FCSK|ENSG00000157353.17|fucose kinase
hg38_v1_chr8_-_123241336_123241383	0.124346	GLI3	ENST00000276704.6|C8orf76|ENSG00000189376.12|chromosome 8 open reading frame 76
hg38_v1_chr7_-_105522204_105522262	0.124111	GLI3	ENST00000356362.6|PUS7|ENSG00000091127.14|pseudouridine synthase 7
hg38_v1_chr3_-_8644782_8644800	0.123941	GLI3	ENST00000544814.6|SSUH2|ENSG00000125046.15|ssu-2 homolog
hg38_v1_chr19_-_42427379_42427393	0.12384	GLI3	ENST00000244289.9|LIPE|ENSG00000079435.10|lipase E, hormone sensitive type
hg38_v1_chr8_+_109362453_109362531	0.123264	GLI3	ENST00000378402.10|PKHD1L1|ENSG00000205038.12|PKHD1 like 1
hg38_v1_chr19_+_49496424_49496454	0.123221	GLI3	ENST00000596873.1|RPS11|ENSG00000142534.7|ribosomal protein S11	ENST00000594493.1|RPS11|ENSG00000142534.7|ribosomal protein S11	ENST00000270625.7|RPS11|ENSG00000142534.7|ribosomal protein S11	ENST00000599561.1|RPS11|ENSG00000142534.7|ribosomal protein S11
hg38_v1_chr9_+_128098304_128098463	0.12317	GLI3	ENST00000373064.9|SLC25A25|ENSG00000148339.13|solute carrier family 25 member 25
hg38_v1_chr15_-_28532971_28532971	0.123089	GLI3	ENST00000525590.2|GOLGA8G|ENSG00000183629.13|golgin A8 family member G
hg38_v1_chr15_-_42920638_42920794	0.122635	GLI3	ENST00000566931.1|TTBK2|ENSG00000128881.17|tau tubulin kinase 2	ENST00000564431.5|TTBK2|ENSG00000128881.17|tau tubulin kinase 2	ENST00000567274.5|TTBK2|ENSG00000128881.17|tau tubulin kinase 2	ENST00000267890.11|TTBK2|ENSG00000128881.17|tau tubulin kinase 2
hg38_v1_chr1_+_167721954_167722152	0.122345	GLI3	ENST00000359523.7|MPZL1|ENSG00000197965.12|myelin protein zero like 1	ENST00000392121.7|MPZL1|ENSG00000197965.12|myelin protein zero like 1	ENST00000474859.5|MPZL1|ENSG00000197965.12|myelin protein zero like 1
hg38_v1_chr19_+_54874275_54874290	0.121295	GLI3	ENST00000469767.5|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000391725.7|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000345937.8|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000353758.8|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000359272.8|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000391723.7|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000391724.3|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor
hg38_v1_chr6_-_166956400_166956476	0.121274	GLI3	ENST00000620173.5|RNASET2|ENSG00000026297.17|ribonuclease T2	ENST00000683770.1|RNASET2|ENSG00000026297.17|ribonuclease T2
hg38_v1_chr4_-_87220603_87220639	0.120984	GLI3	ENST00000273963.10|KLHL8|ENSG00000145332.14|kelch like family member 8
hg38_v1_chr8_+_30095649_30095673	0.120955	GLI3	ENST00000518192.5|LEPROTL1|ENSG00000104660.19|leptin receptor overlapping transcript like 1
hg38_v1_chr7_-_151187772_151187832	0.120815	GLI3	ENST00000377867.7|ASB10|ENSG00000146926.11|ankyrin repeat and SOCS box containing 10
hg38_v1_chr18_-_46969912_46969912	0.1208	GLI3	ENST00000620522.2|ELOA3CP|ENSG00000275553.4|elongin A3 family member C, pseudogene
hg38_v1_chr11_-_65606959_65607026	0.120763	GLI3	ENST00000532507.5|MAP3K11|ENSG00000173327.8|mitogen-activated protein kinase kinase kinase 11
hg38_v1_chr10_-_103452384_103452426	0.120495	GLI3	ENST00000369788.7|CALHM2|ENSG00000138172.11|calcium homeostasis modulator family member 2
hg38_v1_chr17_+_75087943_75088008	0.120296	GLI3	ENST00000329783.9|SLC16A5|ENSG00000170190.16|solute carrier family 16 member 5	ENST00000578376.5|SLC16A5|ENSG00000170190.16|solute carrier family 16 member 5
hg38_v1_chr19_+_2096873_2096931	0.120201	GLI3	ENST00000395307.6|IZUMO4|ENSG00000099840.14|IZUMO family member 4	ENST00000395301.8|IZUMO4|ENSG00000099840.14|IZUMO family member 4	ENST00000620263.4|IZUMO4|ENSG00000099840.14|IZUMO family member 4
hg38_v1_chr7_+_107168961_107169010	0.120146	GLI3	ENST00000468410.5|HBP1|ENSG00000105856.14|HMG-box transcription factor 1	ENST00000478930.5|HBP1|ENSG00000105856.14|HMG-box transcription factor 1	ENST00000464009.1|HBP1|ENSG00000105856.14|HMG-box transcription factor 1	ENST00000222574.9|HBP1|ENSG00000105856.14|HMG-box transcription factor 1
hg38_v1_chr3_+_4493442_4493462	0.120008	GLI3	ENST00000456211.8|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000443694.5|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000648266.1|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1
hg38_v1_chr17_-_7857461_7857578	0.118853	GLI3	ENST00000575771.6|NAA38|ENSG00000183011.14|N-alpha-acetyltransferase 38, NatC auxiliary subunit	ENST00000575071.5|NAA38|ENSG00000183011.14|N-alpha-acetyltransferase 38, NatC auxiliary subunit
hg38_v1_chr12_-_213338_213385	0.118773	GLI3	ENST00000424061.6|SLC6A12|ENSG00000111181.13|solute carrier family 6 member 12
hg38_v1_chr6_-_46652786_46652834	0.118515	GLI3	ENST00000275016.3|CYP39A1|ENSG00000146233.8|cytochrome P450 family 39 subfamily A member 1	ENST00000619708.4|CYP39A1|ENSG00000146233.8|cytochrome P450 family 39 subfamily A member 1
hg38_v1_chr7_+_120273129_120273183	0.118437	GLI3	ENST00000331113.9|KCND2|ENSG00000184408.10|potassium voltage-gated channel subfamily D member 2
hg38_v1_chrX_-_49233309_49233371	0.117793	GLI3	ENST00000376251.5|CACNA1F|ENSG00000102001.13|calcium voltage-gated channel subunit alpha1 F	ENST00000323022.10|CACNA1F|ENSG00000102001.13|calcium voltage-gated channel subunit alpha1 F	ENST00000376265.2|CACNA1F|ENSG00000102001.13|calcium voltage-gated channel subunit alpha1 F
hg38_v1_chr1_+_109910986_109911027	0.1177	GLI3	ENST00000369801.1|CSF1|ENSG00000184371.14|colony stimulating factor 1
hg38_v1_chr3_-_197299281_197299332	0.117473	GLI3	ENST00000419354.5|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000667104.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1	ENST00000658701.1|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1
hg38_v1_chr20_+_2207217_2207328	0.117222	GLI3	ENST00000447956.5|ENSG00000226644.5|ENSG00000226644.5|novel transcript	ENST00000411839.1|ENSG00000226644.5|ENSG00000226644.5|novel transcript	ENST00000651531.1|ENSG00000286022.1|ENSG00000286022.1|novel protein
hg38_v1_chr21_-_32612535_32612573	0.116787	GLI3	ENST00000673945.1|CFAP298-TCP10L|ENSG00000265590.10|CFAP298-TCP10L readthrough	ENST00000458138.1|CFAP298|ENSG00000159079.19|cilia and flagella associated protein 298
hg38_v1_chr17_-_28951285_28951401	0.116719	GLI3	ENST00000577226.5|PHF12|ENSG00000109118.14|PHD finger protein 12
hg38_v1_chr16_-_75251482_75251662	0.116515	GLI3	ENST00000393420.10|BCAR1|ENSG00000050820.17|BCAR1 scaffold protein, Cas family member	ENST00000162330.10|BCAR1|ENSG00000050820.17|BCAR1 scaffold protein, Cas family member
hg38_v1_chr3_+_161221280_161221328	0.11647	GLI3	ENST00000472947.5|NMD3|ENSG00000169251.13|NMD3 ribosome export adaptor	ENST00000351193.7|NMD3|ENSG00000169251.13|NMD3 ribosome export adaptor	ENST00000463518.5|NMD3|ENSG00000169251.13|NMD3 ribosome export adaptor
hg38_v1_chrY_+_6246223_6246269	0.116159	GLI3	ENST00000429039.5|TSPY2|ENSG00000168757.12|testis specific protein Y-linked 2	ENST00000320701.8|TSPY2|ENSG00000168757.12|testis specific protein Y-linked 2	ENST00000383042.1|TSPY2|ENSG00000168757.12|testis specific protein Y-linked 2
hg38_v1_chr19_-_48746797_48746909	0.115865	GLI3	ENST00000602105.1|IZUMO1|ENSG00000182264.9|izumo sperm-egg fusion 1	ENST00000332955.7|IZUMO1|ENSG00000182264.9|izumo sperm-egg fusion 1
hg38_v1_chr5_-_176416222_176416261	0.115803	GLI3	ENST00000508425.5|CLTB|ENSG00000175416.16|clathrin light chain B
hg38_v1_chrX_+_55717796_55717885	0.11538	GLI3	ENST00000262850.7|RRAGB|ENSG00000083750.13|Ras related GTP binding B
hg38_v1_chr14_-_106374129_106374145	0.11493	GLI3	ENST00000390616.2|IGHV4-34|ENSG00000211956.2|immunoglobulin heavy variable 4-34
hg38_v1_chr15_-_45129857_45129938	0.114895	GLI3	ENST00000267803.8|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000613425.4|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000559014.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000558851.1|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000559988.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000558996.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000558422.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000559226.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000560572.6|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000558326.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000558377.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1	ENST00000559644.5|DUOXA1|ENSG00000140254.13|dual oxidase maturation factor 1
hg38_v1_chr10_-_132331818_132331864	0.114766	GLI3	ENST00000368619.3|STK32C|ENSG00000165752.17|serine/threonine kinase 32C	ENST00000456004.1|STK32C|ENSG00000165752.17|serine/threonine kinase 32C	ENST00000368620.2|STK32C|ENSG00000165752.17|serine/threonine kinase 32C
hg38_v1_chrX_-_44542833_44542869	0.11472	GLI3	ENST00000378045.5|FUNDC1|ENSG00000069509.6|FUN14 domain containing 1
hg38_v1_chr19_-_15898057_15898075	0.114649	GLI3	ENST00000011989.11|CYP4F2|ENSG00000186115.13|cytochrome P450 family 4 subfamily F member 2	ENST00000221700.11|CYP4F2|ENSG00000186115.13|cytochrome P450 family 4 subfamily F member 2
hg38_v1_chrX_-_3713593_3713660	0.114378	GLI3	ENST00000262848.6|PRKX|ENSG00000183943.6|protein kinase X-linked
hg38_v1_chr1_-_119648165_119648291	0.114355	GLI3	ENST00000421812.3|ZNF697|ENSG00000143067.5|zinc finger protein 697
hg38_v1_chr19_-_3868993_3869044	0.113819	GLI3	ENST00000674260.1|ZFR2|ENSG00000105278.12|zinc finger RNA binding protein 2	ENST00000592398.1|ZFR2|ENSG00000105278.12|zinc finger RNA binding protein 2	ENST00000439086.2|ZFR2|ENSG00000105278.12|zinc finger RNA binding protein 2	ENST00000262961.9|ZFR2|ENSG00000105278.12|zinc finger RNA binding protein 2
hg38_v1_chr17_-_7114240_7114309	0.113616	GLI3	ENST00000446679.6|ASGR2|ENSG00000161944.16|asialoglycoprotein receptor 2
hg38_v1_chr20_+_37346128_37346149	0.112412	GLI3	ENST00000373578.7|SRC|ENSG00000197122.12|SRC proto-oncogene, non-receptor tyrosine kinase
hg38_v1_chr19_+_35533436_35533462	0.11219	GLI3	ENST00000222286.9|GAPDHS|ENSG00000105679.9|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
hg38_v1_chr13_+_76992412_76992573	0.112109	GLI3	ENST00000636705.1|CLN5|ENSG00000102805.16|CLN5 intracellular trafficking protein
hg38_v1_chr1_+_23791203_23791228	0.111978	GLI3	ENST00000374503.7|LYPLA2|ENSG00000011009.11|lysophospholipase 2	ENST00000374502.7|LYPLA2|ENSG00000011009.11|lysophospholipase 2
hg38_v1_chr2_+_233636502_233636515	0.111957	GLI3	ENST00000373445.1|UGT1A10|ENSG00000242515.5|UDP glucuronosyltransferase family 1 member A10
hg38_v1_chr15_+_45402324_45402368	0.111809	GLI3	ENST00000305560.11|SPATA5L1|ENSG00000171763.20|spermatogenesis associated 5 like 1
hg38_v1_chr1_-_160579439_160579516	0.111759	GLI3	ENST00000368054.8|CD84|ENSG00000066294.15|CD84 molecule	ENST00000368048.7|CD84|ENSG00000066294.15|CD84 molecule	ENST00000311224.8|CD84|ENSG00000066294.15|CD84 molecule	ENST00000368051.3|CD84|ENSG00000066294.15|CD84 molecule	ENST00000534968.5|CD84|ENSG00000066294.15|CD84 molecule
hg38_v1_chr2_-_241637045_241637186	0.111756	GLI3	ENST00000407315.6|THAP4|ENSG00000176946.12|THAP domain containing 4
hg38_v1_chr17_+_17476980_17477047	0.110976	GLI3	ENST00000580462.1|MED9|ENSG00000141026.6|mediator complex subunit 9	ENST00000268711.4|MED9|ENSG00000141026.6|mediator complex subunit 9
hg38_v1_chr21_-_6468040_6468040	0.110557	GLI3	ENST00000618024.4|CBSL|ENSG00000274276.4|cystathionine beta-synthase like	ENST00000617706.4|CBSL|ENSG00000274276.4|cystathionine beta-synthase like
hg38_v1_chr11_+_64318091_64318264	0.110391	GLI3	ENST00000265462.9|PRDX5|ENSG00000126432.14|peroxiredoxin 5	ENST00000352435.8|PRDX5|ENSG00000126432.14|peroxiredoxin 5	ENST00000347941.4|PRDX5|ENSG00000126432.14|peroxiredoxin 5
hg38_v1_chr2_+_11612253_11612273	0.11037	GLI3	ENST00000396123.2|GREB1|ENSG00000196208.14|growth regulating estrogen receptor binding 1
hg38_v1_chrX_-_48356688_48356707	0.110251	GLI3	ENST00000298396.7|SSX3|ENSG00000165584.16|SSX family member 3	ENST00000376893.7|SSX3|ENSG00000165584.16|SSX family member 3
hg38_v1_chr16_+_3458006_3458060	0.110248	GLI3	ENST00000577013.6|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000414063.6|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000572584.2|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit
hg38_v1_chr9_-_133418036_133418096	0.109849	GLI3	ENST00000371935.6|REXO4|ENSG00000148300.12|REX4 homolog, 3'-5' exonuclease
hg38_v1_chr14_-_105864247_105864269	0.109739	GLI3	ENST00000461719.1|IGHJ4|ENSG00000240041.1|immunoglobulin heavy joining 4
hg38_v1_chr20_+_833734_833780	0.10963	GLI3	ENST00000304189.6|FAM110A|ENSG00000125898.13|family with sequence similarity 110 member A
hg38_v1_chr9_-_98255618_98255671	0.109472	GLI3	ENST00000375066.6|TBC1D2|ENSG00000095383.20|TBC1 domain family member 2	ENST00000465784.7|TBC1D2|ENSG00000095383.20|TBC1 domain family member 2
hg38_v1_chr7_-_42932148_42932214	0.10945	GLI3	ENST00000223321.9|PSMA2|ENSG00000106588.12|proteasome 20S subunit alpha 2	ENST00000445517.1|PSMA2|ENSG00000106588.12|proteasome 20S subunit alpha 2	ENST00000677581.1|ENSG00000256646.8|ENSG00000256646.8|novel PSMA2 and C7orf25 readthrough
hg38_v1_chr8_-_41797589_41797641	0.109356	GLI3	ENST00000347528.8|ANK1|ENSG00000029534.21|ankyrin 1	ENST00000289734.13|ANK1|ENSG00000029534.21|ankyrin 1
hg38_v1_chr9_-_98255589_98255615	0.10925	GLI3	ENST00000342112.9|TBC1D2|ENSG00000095383.20|TBC1 domain family member 2
hg38_v1_chr1_-_110064916_110064927	0.109168	GLI3	ENST00000649954.1|ALX3|ENSG00000156150.9|ALX homeobox 3
hg38_v1_chr10_-_95290992_95291015	0.109093	GLI3	ENST00000329399.7|PDLIM1|ENSG00000107438.9|PDZ and LIM domain 1
hg38_v1_chr3_-_33440343_33440413	0.108822	GLI3	ENST00000283629.8|UBP1|ENSG00000153560.12|upstream binding protein 1
hg38_v1_chr13_+_27251569_27251604	0.108554	GLI3	ENST00000272274.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000319826.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000326092.8|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr2_-_201071579_201071688	0.108311	GLI3	ENST00000453765.5|FAM126B|ENSG00000155744.10|family with sequence similarity 126 member B	ENST00000452799.5|FAM126B|ENSG00000155744.10|family with sequence similarity 126 member B	ENST00000446678.5|FAM126B|ENSG00000155744.10|family with sequence similarity 126 member B	ENST00000418596.7|FAM126B|ENSG00000155744.10|family with sequence similarity 126 member B	ENST00000681958.1|FAM126B|ENSG00000155744.10|family with sequence similarity 126 member B
hg38_v1_chr7_+_150405668_150405737	0.107851	GLI3	ENST00000642087.1|ENSG00000284691.1|ENSG00000284691.1|novel zinc finger protein
hg38_v1_chr19_-_46784733_46784830	0.107772	GLI3	ENST00000593713.1|SLC1A5|ENSG00000105281.12|solute carrier family 1 member 5	ENST00000598022.1|SLC1A5|ENSG00000105281.12|solute carrier family 1 member 5	ENST00000434726.6|SLC1A5|ENSG00000105281.12|solute carrier family 1 member 5
hg38_v1_chr6_+_116280098_116280125	0.107203	GLI3	ENST00000643175.1|DSE|ENSG00000111817.19|dermatan sulfate epimerase	ENST00000452085.7|DSE|ENSG00000111817.19|dermatan sulfate epimerase
hg38_v1_chrX_+_7843088_7843172	0.10694	GLI3	ENST00000341408.5|VCX|ENSG00000182583.12|variable charge X-linked
hg38_v1_chr9_+_92947516_92947529	0.106904	GLI3	ENST00000375482.8|FGD3|ENSG00000127084.19|FYVE, RhoGEF and PH domain containing 3
hg38_v1_chr16_+_30200729_30200729	0.106428	GLI3	ENST00000563322.5|SULT1A3|ENSG00000261052.6|sulfotransferase family 1A member 3
hg38_v1_chr11_+_46332905_46332937	0.105609	GLI3	ENST00000343674.10|DGKZ|ENSG00000149091.15|diacylglycerol kinase zeta
hg38_v1_chr13_+_19958708_19958750	0.10554	GLI3	ENST00000382874.6|ZMYM2|ENSG00000121741.17|zinc finger MYM-type containing 2	ENST00000610343.5|ZMYM2|ENSG00000121741.17|zinc finger MYM-type containing 2
hg38_v1_chr10_-_6062290_6062315	0.104941	GLI3	ENST00000256876.10|IL2RA|ENSG00000134460.18|interleukin 2 receptor subunit alpha	ENST00000379954.5|IL2RA|ENSG00000134460.18|interleukin 2 receptor subunit alpha
hg38_v1_chr16_+_56657924_56657967	0.104824	GLI3	ENST00000334350.7|MT1F|ENSG00000198417.7|metallothionein 1F
hg38_v1_chr7_-_100436425_100436521	0.104812	GLI3	ENST00000292330.3|PPP1R35|ENSG00000160813.7|protein phosphatase 1 regulatory subunit 35
hg38_v1_chr3_+_129543175_129543175	0.104764	GLI3	ENST00000324382.7|H1-8|ENSG00000178804.8|H1.8 linker histone
hg38_v1_chr6_-_31902041_31902107	0.104558	GLI3	ENST00000375527.3|ZBTB12|ENSG00000204366.4|zinc finger and BTB domain containing 12
hg38_v1_chr14_+_75002903_75002987	0.104258	GLI3	ENST00000266126.10|EIF2B2|ENSG00000119718.11|eukaryotic translation initiation factor 2B subunit beta
hg38_v1_chrX_-_104013708_104013708	0.104241	GLI3	ENST00000217926.7|H2BW1|ENSG00000123569.10|H2B.W histone 1
hg38_v1_chr9_+_69820799_69820823	0.104169	GLI3	ENST00000377197.8|C9orf135|ENSG00000204711.9|chromosome 9 open reading frame 135
hg38_v1_chr17_-_7857854_7857882	0.104063	GLI3	ENST00000333775.9|NAA38|ENSG00000183011.14|N-alpha-acetyltransferase 38, NatC auxiliary subunit
hg38_v1_chr1_+_36155930_36155978	0.103853	GLI3	ENST00000316156.8|MAP7D1|ENSG00000116871.16|MAP7 domain containing 1
hg38_v1_chr14_-_21023318_21023522	0.103553	GLI3	ENST00000298684.9|NDRG2|ENSG00000165795.24|NDRG family member 2	ENST00000557169.5|NDRG2|ENSG00000165795.24|NDRG family member 2	ENST00000553563.5|NDRG2|ENSG00000165795.24|NDRG family member 2
hg38_v1_chr19_-_16572304_16572432	0.103464	GLI3	ENST00000436553.6|SLC35E1|ENSG00000127526.15|solute carrier family 35 member E1	ENST00000595753.6|SLC35E1|ENSG00000127526.15|solute carrier family 35 member E1
hg38_v1_chr10_-_35642286_35642303	0.103224	GLI3	ENST00000374694.3|FZD8|ENSG00000177283.8|frizzled class receptor 8
hg38_v1_chr12_-_6689450_6689517	0.103209	GLI3	ENST00000355772.8|ZNF384|ENSG00000126746.18|zinc finger protein 384	ENST00000417772.7|ZNF384|ENSG00000126746.18|zinc finger protein 384	ENST00000319770.7|ZNF384|ENSG00000126746.18|zinc finger protein 384	ENST00000396801.7|ZNF384|ENSG00000126746.18|zinc finger protein 384
hg38_v1_chr16_-_67806513_67806652	0.102245	GLI3	ENST00000317506.8|RANBP10|ENSG00000141084.11|RAN binding protein 10	ENST00000448631.6|RANBP10|ENSG00000141084.11|RAN binding protein 10	ENST00000602677.5|RANBP10|ENSG00000141084.11|RAN binding protein 10	ENST00000630626.2|RANBP10|ENSG00000141084.11|RAN binding protein 10
hg38_v1_chr8_+_106270161_106270265	0.101702	GLI3	ENST00000517566.7|OXR1|ENSG00000164830.19|oxidation resistance 1	ENST00000531443.6|OXR1|ENSG00000164830.19|oxidation resistance 1
hg38_v1_chr12_-_124989053_124989139	0.101691	GLI3	ENST00000308736.7|DHX37|ENSG00000150990.9|DEAH-box helicase 37
hg38_v1_chr1_-_1116075_1116115	0.101626	GLI3	ENST00000379339.5|C1orf159|ENSG00000131591.18|chromosome 1 open reading frame 159	ENST00000421241.7|C1orf159|ENSG00000131591.18|chromosome 1 open reading frame 159	ENST00000480643.1|C1orf159|ENSG00000131591.18|chromosome 1 open reading frame 159	ENST00000434641.5|C1orf159|ENSG00000131591.18|chromosome 1 open reading frame 159
hg38_v1_chr19_+_49210734_49210784	0.101532	GLI3	ENST00000597316.1|TRPM4|ENSG00000130529.16|transient receptor potential cation channel subfamily M member 4
hg38_v1_chr9_-_127762416_127762457	0.101412	GLI3	ENST00000440630.5|SH2D3C|ENSG00000095370.20|SH2 domain containing 3C	ENST00000429553.5|SH2D3C|ENSG00000095370.20|SH2 domain containing 3C
hg38_v1_chr12_+_101666203_101666357	0.101178	GLI3	ENST00000549608.1|MYBPC1|ENSG00000196091.15|myosin binding protein C1
hg38_v1_chrX_+_15507302_15507318	0.100998	GLI3	ENST00000342014.6|BMX|ENSG00000102010.15|BMX non-receptor tyrosine kinase
hg38_v1_chr10_+_48684859_48684880	0.100825	GLI3	ENST00000360890.6|WDFY4|ENSG00000128815.19|WDFY family member 4	ENST00000325239.11|WDFY4|ENSG00000128815.19|WDFY family member 4
hg38_v1_chr19_-_20661563_20661601	0.100735	GLI3	ENST00000601440.6|ZNF626|ENSG00000188171.16|zinc finger protein 626	ENST00000595094.1|ENSG00000269110.1|ENSG00000269110.1|novel transcript	ENST00000291750.6|ZNF626|ENSG00000188171.16|zinc finger protein 626
hg38_v1_chr17_+_10697576_10697657	0.100033	GLI3	ENST00000379774.5|ADPRM|ENSG00000170222.12|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
hg38_v1_chr5_-_151080978_151081084	0.0998824	GLI3	ENST00000520931.5|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000521591.6|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000520695.5|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000610535.5|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000518977.5|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000389378.6|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1	ENST00000610874.4|TNIP1|ENSG00000145901.16|TNFAIP3 interacting protein 1
hg38_v1_chr14_-_100587404_100587430	0.0997412	GLI3	ENST00000554140.2|BEGAIN|ENSG00000183092.17|brain enriched guanylate kinase associated
hg38_v1_chr1_+_1308587_1308653	0.099741	GLI3	ENST00000379031.10|PUSL1|ENSG00000169972.12|pseudouridine synthase like 1
hg38_v1_chr1_-_156752223_156752242	0.0994723	GLI3	ENST00000368209.9|HDGF|ENSG00000143321.19|heparin binding growth factor
hg38_v1_chr5_+_218241_218357	0.0994466	GLI3	ENST00000617470.4|SDHA|ENSG00000073578.17|succinate dehydrogenase complex flavoprotein subunit A	ENST00000504309.5|SDHA|ENSG00000073578.17|succinate dehydrogenase complex flavoprotein subunit A	ENST00000510361.5|SDHA|ENSG00000073578.17|succinate dehydrogenase complex flavoprotein subunit A	ENST00000264932.11|SDHA|ENSG00000073578.17|succinate dehydrogenase complex flavoprotein subunit A
hg38_v1_chr15_-_31160954_31161106	0.0992373	GLI3	ENST00000558445.5|TRPM1|ENSG00000134160.15|transient receptor potential cation channel subfamily M member 1	ENST00000559177.5|TRPM1|ENSG00000134160.15|transient receptor potential cation channel subfamily M member 1
hg38_v1_chr6_-_99515376_99515389	0.0990085	GLI3	ENST00000327681.10|USP45|ENSG00000123552.18|ubiquitin specific peptidase 45	ENST00000472914.6|USP45|ENSG00000123552.18|ubiquitin specific peptidase 45
hg38_v1_chr4_+_109433772_109433893	0.0984771	GLI3	ENST00000504968.6|SEC24B|ENSG00000138802.11|SEC24 homolog B, COPII coat complex component	ENST00000399100.6|SEC24B|ENSG00000138802.11|SEC24 homolog B, COPII coat complex component	ENST00000265175.5|SEC24B|ENSG00000138802.11|SEC24 homolog B, COPII coat complex component
hg38_v1_chr17_+_75633420_75633452	0.0982599	GLI3	ENST00000375215.3|SMIM5|ENSG00000204323.5|small integral membrane protein 5
hg38_v1_chr22_+_39040857_39040885	0.0978534	GLI3	ENST00000381565.2|APOBEC3F|ENSG00000128394.17|apolipoprotein B mRNA editing enzyme catalytic subunit 3F	ENST00000308521.10|APOBEC3F|ENSG00000128394.17|apolipoprotein B mRNA editing enzyme catalytic subunit 3F
hg38_v1_chr9_+_129110948_129110964	0.0973034	GLI3	ENST00000358994.9|PTPA|ENSG00000119383.21|protein phosphatase 2 phosphatase activator	ENST00000455292.6|PTPA|ENSG00000119383.21|protein phosphatase 2 phosphatase activator
hg38_v1_chr3_-_126655046_126655149	0.0970411	GLI3	ENST00000523403.3|TXNRD3|ENSG00000197763.20|thioredoxin reductase 3	ENST00000524230.9|TXNRD3|ENSG00000197763.20|thioredoxin reductase 3
hg38_v1_chr9_-_98255553_98255580	0.0970115	GLI3	ENST00000375064.5|TBC1D2|ENSG00000095383.20|TBC1 domain family member 2
hg38_v1_chr5_+_81301634_81301657	0.0969983	GLI3	ENST00000438268.2|ZCCHC9|ENSG00000131732.12|zinc finger CCHC-type containing 9
hg38_v1_chr6_-_43369636_43369673	0.096842	GLI3	ENST00000361428.3|ZNF318|ENSG00000171467.16|zinc finger protein 318
hg38_v1_chr16_+_84648502_84648612	0.0962405	GLI3	ENST00000564996.6|KLHL36|ENSG00000135686.13|kelch like family member 36	ENST00000258157.9|KLHL36|ENSG00000135686.13|kelch like family member 36	ENST00000567410.5|KLHL36|ENSG00000135686.13|kelch like family member 36
hg38_v1_chr12_+_54549586_54549654	0.0953453	GLI3	ENST00000243052.8|PDE1B|ENSG00000123360.12|phosphodiesterase 1B
hg38_v1_chr3_-_197298092_197298166	0.095226	GLI3	ENST00000392382.6|DLG1|ENSG00000075711.21|discs large MAGUK scaffold protein 1
hg38_v1_chr17_-_75855204_75855420	0.0951102	GLI3	ENST00000589642.5|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000593002.1|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000590221.5|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000587374.5|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000585462.5|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000254806.8|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000433525.6|WBP2|ENSG00000132471.12|WW domain binding protein 2	ENST00000626827.2|WBP2|ENSG00000132471.12|WW domain binding protein 2
hg38_v1_chr5_+_271637_271686	0.0945104	GLI3	ENST00000264933.9|PDCD6|ENSG00000249915.8|programmed cell death 6	ENST00000505221.5|PDCD6|ENSG00000249915.8|programmed cell death 6	ENST00000509581.5|PDCD6|ENSG00000249915.8|programmed cell death 6	ENST00000507528.5|PDCD6|ENSG00000249915.8|programmed cell death 6
hg38_v1_chr1_-_20508095_20508157	0.0944412	GLI3	ENST00000264198.5|MUL1|ENSG00000090432.7|mitochondrial E3 ubiquitin protein ligase 1
hg38_v1_chr15_+_83447411_83447531	0.094351	GLI3	ENST00000324537.5|SH3GL3|ENSG00000140600.17|SH3 domain containing GRB2 like 3, endophilin A3
hg38_v1_chrX_+_49053554_49053584	0.0941749	GLI3	ENST00000597275.5|CCDC120|ENSG00000147144.13|coiled-coil domain containing 120
hg38_v1_chr2_-_207167220_207167267	0.0937315	GLI3	ENST00000421199.5|KLF7|ENSG00000118263.15|Kruppel like factor 7	ENST00000457962.5|KLF7|ENSG00000118263.15|Kruppel like factor 7
hg38_v1_chr3_-_32502783_32502865	0.0937035	GLI3	ENST00000205636.4|CMTM6|ENSG00000091317.8|CKLF like MARVEL transmembrane domain containing 6
hg38_v1_chr9_-_113340248_113340287	0.0935164	GLI3	ENST00000341761.8|WDR31|ENSG00000148225.16|WD repeat domain 31	ENST00000374195.7|WDR31|ENSG00000148225.16|WD repeat domain 31	ENST00000374193.9|WDR31|ENSG00000148225.16|WD repeat domain 31
hg38_v1_chr7_-_727242_727341	0.0935159	GLI3	ENST00000537384.6|PRKAR1B|ENSG00000188191.15|protein kinase cAMP-dependent type I regulatory subunit beta	ENST00000417852.5|PRKAR1B|ENSG00000188191.15|protein kinase cAMP-dependent type I regulatory subunit beta
hg38_v1_chr6_-_27873525_27873542	0.0933957	GLI3	ENST00000618305.2|H4C13|ENSG00000275126.2|H4 clustered histone 13
hg38_v1_chr18_-_12884151_12884338	0.0933144	GLI3	ENST00000591115.5|PTPN2|ENSG00000175354.20|protein tyrosine phosphatase non-receptor type 2	ENST00000309660.10|PTPN2|ENSG00000175354.20|protein tyrosine phosphatase non-receptor type 2	ENST00000353319.8|PTPN2|ENSG00000175354.20|protein tyrosine phosphatase non-receptor type 2	ENST00000327283.7|PTPN2|ENSG00000175354.20|protein tyrosine phosphatase non-receptor type 2
hg38_v1_chr16_+_29900345_29900408	0.092983	GLI3	ENST00000563177.5|ASPHD1|ENSG00000174939.11|aspartate beta-hydroxylase domain containing 1	ENST00000483405.5|ASPHD1|ENSG00000174939.11|aspartate beta-hydroxylase domain containing 1
hg38_v1_chr11_+_22193009_22193109	0.0925902	GLI3	ENST00000682341.1|ANO5|ENSG00000171714.13|anoctamin 5	ENST00000684663.1|ANO5|ENSG00000171714.13|anoctamin 5	ENST00000683411.1|ANO5|ENSG00000171714.13|anoctamin 5	ENST00000324559.9|ANO5|ENSG00000171714.13|anoctamin 5
hg38_v1_chr11_-_101129706_101129735	0.0924858	GLI3	ENST00000534013.5|PGR|ENSG00000082175.15|progesterone receptor
hg38_v1_chr19_-_45405034_45405118	0.092381	GLI3	ENST00000592134.1|PPP1R13L|ENSG00000104881.16|protein phosphatase 1 regulatory subunit 13 like	ENST00000360957.10|PPP1R13L|ENSG00000104881.16|protein phosphatase 1 regulatory subunit 13 like
hg38_v1_chr3_+_52455589_52455638	0.0923441	GLI3	ENST00000345716.9|NISCH|ENSG00000010322.16|nischarin	ENST00000488380.5|NISCH|ENSG00000010322.16|nischarin	ENST00000420808.2|NISCH|ENSG00000010322.16|nischarin
hg38_v1_chr5_-_159208066_159208132	0.0923102	GLI3	ENST00000519865.5|RNF145|ENSG00000145860.12|ring finger protein 145	ENST00000521606.6|RNF145|ENSG00000145860.12|ring finger protein 145
hg38_v1_chr2_-_219571241_219571519	0.0922871	GLI3	ENST00000373876.5|OBSL1|ENSG00000124006.15|obscurin like cytoskeletal adaptor 1	ENST00000603926.5|OBSL1|ENSG00000124006.15|obscurin like cytoskeletal adaptor 1	ENST00000373873.8|OBSL1|ENSG00000124006.15|obscurin like cytoskeletal adaptor 1	ENST00000289656.3|OBSL1|ENSG00000124006.15|obscurin like cytoskeletal adaptor 1
hg38_v1_chr11_+_73292755_73292768	0.0919055	GLI3	ENST00000680955.1|P2RY6|ENSG00000171631.16|pyrimidinergic receptor P2Y6	ENST00000538328.2|P2RY6|ENSG00000171631.16|pyrimidinergic receptor P2Y6
hg38_v1_chr17_-_7857938_7858079	0.0917638	GLI3	ENST00000575208.2|NAA38|ENSG00000183011.14|N-alpha-acetyltransferase 38, NatC auxiliary subunit
hg38_v1_chr8_-_3409528_3409607	0.0917027	GLI3	ENST00000335551.11|CSMD1|ENSG00000183117.19|CUB and Sushi multiple domains 1
hg38_v1_chr13_+_31739520_31739531	0.0916345	GLI3	ENST00000298386.7|RXFP2|ENSG00000133105.8|relaxin family peptide receptor 2
hg38_v1_chr1_+_203007364_203007402	0.091213	GLI3	ENST00000367242.4|TMEM183A|ENSG00000163444.12|transmembrane protein 183A
hg38_v1_chr16_+_56657999_56658017	0.0906815	GLI3	ENST00000568475.1|MT1F|ENSG00000198417.7|metallothionein 1F
hg38_v1_chr11_-_68903777_68903786	0.0906164	GLI3	ENST00000567045.5|MRPL21|ENSG00000197345.13|mitochondrial ribosomal protein L21	ENST00000450904.6|MRPL21|ENSG00000197345.13|mitochondrial ribosomal protein L21
hg38_v1_chr6_-_33314055_33314086	0.0903923	GLI3	ENST00000434618.7|TAPBP|ENSG00000231925.12|TAP binding protein
hg38_v1_chrX_+_55717733_55717790	0.0903736	GLI3	ENST00000414239.5|RRAGB|ENSG00000083750.13|Ras related GTP binding B	ENST00000374941.9|RRAGB|ENSG00000083750.13|Ras related GTP binding B
hg38_v1_chr12_-_6689359_6689380	0.0903701	GLI3	ENST00000683879.1|ZNF384|ENSG00000126746.18|zinc finger protein 384
hg38_v1_chr16_+_3458063_3458086	0.0900934	GLI3	ENST00000574423.2|ENSG00000263212.2|ENSG00000263212.2|novel transcript	ENST00000576787.5|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000572942.5|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000576916.5|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000575076.5|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit	ENST00000572131.5|NAA60|ENSG00000122390.19|N-alpha-acetyltransferase 60, NatF catalytic subunit
hg38_v1_chr3_-_12841527_12841587	0.0900663	GLI3	ENST00000396953.6|RPL32|ENSG00000144713.13|ribosomal protein L32	ENST00000457131.1|RPL32|ENSG00000144713.13|ribosomal protein L32	ENST00000435983.5|RPL32|ENSG00000144713.13|ribosomal protein L32	ENST00000273223.10|RPL32|ENSG00000144713.13|ribosomal protein L32	ENST00000429711.7|RPL32|ENSG00000144713.13|ribosomal protein L32	ENST00000396957.5|RPL32|ENSG00000144713.13|ribosomal protein L32
hg38_v1_chr1_+_213989691_213989730	0.0900066	GLI3	ENST00000607425.1|PROX1|ENSG00000117707.16|prospero homeobox 1
hg38_v1_chr17_-_44123628_44123702	0.0900042	GLI3	ENST00000587135.1|HDAC5|ENSG00000108840.16|histone deacetylase 5	ENST00000225983.10|HDAC5|ENSG00000108840.16|histone deacetylase 5	ENST00000682912.1|HDAC5|ENSG00000108840.16|histone deacetylase 5	ENST00000588703.5|HDAC5|ENSG00000108840.16|histone deacetylase 5
hg38_v1_chr11_+_66257696_66257719	0.0899274	GLI3	ENST00000421552.5|KLC2|ENSG00000174996.12|kinesin light chain 2	ENST00000394067.7|KLC2|ENSG00000174996.12|kinesin light chain 2	ENST00000316924.9|KLC2|ENSG00000174996.12|kinesin light chain 2	ENST00000394078.5|KLC2|ENSG00000174996.12|kinesin light chain 2
hg38_v1_chr7_-_102517755_102517777	0.0898231	GLI3	ENST00000306682.6|RASA4B|ENSG00000170667.15|RAS p21 protein activator 4B	ENST00000465829.6|RASA4B|ENSG00000170667.15|RAS p21 protein activator 4B	ENST00000541662.5|RASA4B|ENSG00000170667.15|RAS p21 protein activator 4B
hg38_v1_chr4_-_87220491_87220600	0.0897519	GLI3	ENST00000425278.6|KLHL8|ENSG00000145332.14|kelch like family member 8	ENST00000498875.6|KLHL8|ENSG00000145332.14|kelch like family member 8
hg38_v1_chr22_-_40862070_40862119	0.0895854	GLI3	ENST00000307221.5|DNAJB7|ENSG00000172404.5|DnaJ heat shock protein family (Hsp40) member B7
hg38_v1_chr5_-_850986_850986	0.0895721	GLI3	ENST00000283441.12|ZDHHC11|ENSG00000188818.12|zinc finger DHHC-type containing 11
hg38_v1_chr10_+_69180226_69180288	0.0894365	GLI3	ENST00000359655.9|SUPV3L1|ENSG00000156502.14|Suv3 like RNA helicase	ENST00000422378.1|SUPV3L1|ENSG00000156502.14|Suv3 like RNA helicase
hg38_v1_chr8_+_22999535_22999569	0.0890327	GLI3	ENST00000251822.7|RHOBTB2|ENSG00000008853.17|Rho related BTB domain containing 2
hg38_v1_chr11_-_77411883_77412000	0.0887295	GLI3	ENST00000528203.5|PAK1|ENSG00000149269.10|p21 (RAC1) activated kinase 1	ENST00000528592.5|PAK1|ENSG00000149269.10|p21 (RAC1) activated kinase 1	ENST00000528633.1|PAK1|ENSG00000149269.10|p21 (RAC1) activated kinase 1	ENST00000529248.5|PAK1|ENSG00000149269.10|p21 (RAC1) activated kinase 1
hg38_v1_chr5_-_80256038_80256088	0.0885608	GLI3	ENST00000507668.7|SERINC5|ENSG00000164300.17|serine incorporator 5
hg38_v1_chr3_-_10011079_10011133	0.0885299	GLI3	ENST00000383808.7|ENSG00000206567.10|ENSG00000206567.10|novel transcript	ENST00000426698.1|ENSG00000206567.10|ENSG00000206567.10|novel transcript	ENST00000470827.2|EMC3|ENSG00000125037.12|ER membrane protein complex subunit 3
hg38_v1_chr7_-_150955796_150955826	0.0881319	GLI3	ENST00000330883.9|KCNH2|ENSG00000055118.17|potassium voltage-gated channel subfamily H member 2
hg38_v1_chr3_-_185821092_185821147	0.0880803	GLI3	ENST00000421047.3|IGF2BP2|ENSG00000073792.16|insulin like growth factor 2 mRNA binding protein 2
hg38_v1_chr14_+_103100328_103100328	0.0880233	GLI3	ENST00000559116.1|EXOC3L4|ENSG00000205436.7|exocyst complex component 3 like 4
hg38_v1_chr6_-_30932147_30932181	0.0875564	GLI3	ENST00000359086.4|SFTA2|ENSG00000196260.5|surfactant associated 2
hg38_v1_chr1_-_16018005_16018073	0.0873749	GLI3	ENST00000406363.2|HSPB7|ENSG00000173641.18|heat shock protein family B (small) member 7	ENST00000411503.5|HSPB7|ENSG00000173641.18|heat shock protein family B (small) member 7	ENST00000311890.14|HSPB7|ENSG00000173641.18|heat shock protein family B (small) member 7	ENST00000487046.1|HSPB7|ENSG00000173641.18|heat shock protein family B (small) member 7
hg38_v1_chr6_-_35512882_35512902	0.087168	GLI3	ENST00000229771.11|TULP1|ENSG00000112041.13|TUB like protein 1
hg38_v1_chr10_-_47762676_47762676	0.0871228	GLI3	ENST00000622861.5|ENSG00000277758.6|ENSG00000277758.6|novel protein identical to synaptotagmin XV
hg38_v1_chr10_+_132332136_132332218	0.0870922	GLI3	ENST00000344079.9|LRRC27|ENSG00000148814.18|leucine rich repeat containing 27	ENST00000625755.2|LRRC27|ENSG00000148814.18|leucine rich repeat containing 27	ENST00000368614.8|LRRC27|ENSG00000148814.18|leucine rich repeat containing 27
hg38_v1_chr9_+_4839761_4839780	0.0870311	GLI3	ENST00000448872.6|RCL1|ENSG00000120158.12|RNA terminal phosphate cyclase like 1	ENST00000441844.2|RCL1|ENSG00000120158.12|RNA terminal phosphate cyclase like 1
hg38_v1_chrX_+_71144818_71144871	0.0864882	GLI3	ENST00000536169.5|NLGN3|ENSG00000196338.14|neuroligin 3	ENST00000358741.4|NLGN3|ENSG00000196338.14|neuroligin 3	ENST00000395855.6|NLGN3|ENSG00000196338.14|neuroligin 3	ENST00000374051.7|NLGN3|ENSG00000196338.14|neuroligin 3
hg38_v1_chr19_-_17460893_17460932	0.0864407	GLI3	ENST00000301944.3|NXNL1|ENSG00000171773.3|nucleoredoxin like 1
hg38_v1_chr20_+_44714853_44714939	0.086316	GLI3	ENST00000372865.4|CCN5|ENSG00000064205.11|cellular communication network factor 5
hg38_v1_chr7_+_130381092_130381107	0.085983	GLI3	ENST00000484324.1|CPA1|ENSG00000091704.10|carboxypeptidase A1
hg38_v1_chr17_-_7857139_7857268	0.0858526	GLI3	ENST00000576384.1|NAA38|ENSG00000183011.14|N-alpha-acetyltransferase 38, NatC auxiliary subunit
hg38_v1_chr5_+_168529299_168529351	0.0849181	GLI3	ENST00000338333.5|FBLL1|ENSG00000188573.8|fibrillarin like 1
hg38_v1_chr8_-_70669142_70669246	0.0847942	GLI3	ENST00000522447.5|LACTB2|ENSG00000147592.9|lactamase beta 2	ENST00000276590.5|LACTB2|ENSG00000147592.9|lactamase beta 2
hg38_v1_chr11_+_22193155_22193185	0.0847468	GLI3	ENST00000682266.1|ANO5|ENSG00000171714.13|anoctamin 5	ENST00000683197.1|ANO5|ENSG00000171714.13|anoctamin 5
hg38_v1_chr9_+_100442271_100442271	0.0846427	GLI3	ENST00000502978.1|MSANTD3-TMEFF1|ENSG00000251349.3|MSANTD3-TMEFF1 readthrough
hg38_v1_chr13_+_31739542_31739562	0.0844444	GLI3	ENST00000380314.2|RXFP2|ENSG00000133105.8|relaxin family peptide receptor 2
hg38_v1_chr10_-_112183698_112183778	0.0842673	GLI3	ENST00000369425.5|GPAM|ENSG00000119927.14|glycerol-3-phosphate acyltransferase, mitochondrial	ENST00000348367.9|GPAM|ENSG00000119927.14|glycerol-3-phosphate acyltransferase, mitochondrial
hg38_v1_chr19_+_1275508_1275587	0.0834952	GLI3	ENST00000409293.6|FAM174C|ENSG00000228300.14|family with sequence similarity 174 member C
hg38_v1_chr11_+_57181945_57181968	0.0830748	GLI3	ENST00000497933.3|LRRC55|ENSG00000183908.7|leucine rich repeat containing 55
hg38_v1_chr19_+_58451607_58451653	0.0828753	GLI3	ENST00000545523.5|ZNF324B|ENSG00000249471.8|zinc finger protein 324B	ENST00000599194.5|ZNF324B|ENSG00000249471.8|zinc finger protein 324B	ENST00000336614.9|ZNF324B|ENSG00000249471.8|zinc finger protein 324B	ENST00000598244.5|ZNF324B|ENSG00000249471.8|zinc finger protein 324B	ENST00000599193.5|ZNF324B|ENSG00000249471.8|zinc finger protein 324B	ENST00000594214.1|ZNF324B|ENSG00000249471.8|zinc finger protein 324B
hg38_v1_chr22_+_22322452_22322472	0.0828692	GLI3	ENST00000390290.3|IGLV1-51|ENSG00000211644.3|immunoglobulin lambda variable 1-51
hg38_v1_chrX_-_9034127_9034127	0.0828095	GLI3	ENST00000327220.10|FAM9B|ENSG00000177138.17|family with sequence similarity 9 member B
hg38_v1_chr5_-_90409720_90409793	0.0827473	GLI3	ENST00000522864.5|CETN3|ENSG00000153140.9|centrin 3	ENST00000283122.8|CETN3|ENSG00000153140.9|centrin 3	ENST00000522083.5|CETN3|ENSG00000153140.9|centrin 3	ENST00000522565.5|CETN3|ENSG00000153140.9|centrin 3	ENST00000522842.1|CETN3|ENSG00000153140.9|centrin 3
hg38_v1_chr17_+_18476737_18476805	0.0825685	GLI3	ENST00000581545.5|LGALS9C|ENSG00000171916.17|galectin 9C	ENST00000582333.5|LGALS9C|ENSG00000171916.17|galectin 9C	ENST00000328114.11|LGALS9C|ENSG00000171916.17|galectin 9C	ENST00000583322.5|LGALS9C|ENSG00000171916.17|galectin 9C	ENST00000584941.5|LGALS9C|ENSG00000171916.17|galectin 9C
hg38_v1_chr22_-_42144549_42144577	0.0824069	GLI3	ENST00000614967.4|CYP2D7|ENSG00000205702.11|cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)	ENST00000612115.1|CYP2D7|ENSG00000205702.11|cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene)
hg38_v1_chr17_-_4187106_4187111	0.0823889	GLI3	ENST00000574736.1|ANKFY1|ENSG00000185722.18|ankyrin repeat and FYVE domain containing 1
hg38_v1_chr3_-_58666765_58666780	0.0818507	GLI3	ENST00000358781.7|FAM3D|ENSG00000198643.7|FAM3 metabolism regulating signaling molecule D
hg38_v1_chr22_-_30289607_30289635	0.0818391	GLI3	ENST00000404953.7|CASTOR1|ENSG00000239282.8|cytosolic arginine sensor for mTORC1 subunit 1
hg38_v1_chrX_-_40647509_40647573	0.0818207	GLI3	ENST00000378421.1|CXorf38|ENSG00000185753.13|chromosome X open reading frame 38	ENST00000378426.5|CXorf38|ENSG00000185753.13|chromosome X open reading frame 38	ENST00000327877.10|CXorf38|ENSG00000185753.13|chromosome X open reading frame 38
hg38_v1_chr19_-_54280498_54280575	0.0817514	GLI3	ENST00000391746.5|LILRB2|ENSG00000131042.15|leukocyte immunoglobulin like receptor B2
hg38_v1_chr15_-_42920798_42920815	0.0816666	GLI3	ENST00000622375.4|TTBK2|ENSG00000128881.17|tau tubulin kinase 2	ENST00000567840.5|TTBK2|ENSG00000128881.17|tau tubulin kinase 2
hg38_v1_chr1_+_243256034_243256082	0.0815224	GLI3	ENST00000366541.8|SDCCAG8|ENSG00000054282.16|SHH signaling and ciliogenesis regulator SDCCAG8
hg38_v1_chr11_+_60756953_60757003	0.0813336	GLI3	ENST00000528170.5|MS4A15|ENSG00000166961.15|membrane spanning 4-domains A15	ENST00000337911.8|MS4A15|ENSG00000166961.15|membrane spanning 4-domains A15
hg38_v1_chr1_-_227735233_227735411	0.0812711	GLI3	ENST00000620518.5|JMJD4|ENSG00000081692.13|jumonji domain containing 4	ENST00000438896.3|JMJD4|ENSG00000081692.13|jumonji domain containing 4
hg38_v1_chr10_+_103396607_103396691	0.0811044	GLI3	ENST00000649849.1|PDCD11|ENSG00000148843.15|programmed cell death 11	ENST00000369797.8|PDCD11|ENSG00000148843.15|programmed cell death 11
hg38_v1_chr12_+_1691011_1691084	0.0806232	GLI3	ENST00000357103.5|ADIPOR2|ENSG00000006831.10|adiponectin receptor 2
hg38_v1_chr17_+_77373085_77373190	0.0805603	GLI3	ENST00000423034.6|SEPTIN9|ENSG00000184640.20|septin 9
hg38_v1_chr2_-_240557957_240558021	0.0799854	GLI3	ENST00000373318.6|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000406958.5|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000272972.7|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000401804.5|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000361678.8|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000391987.5|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1	ENST00000405523.7|ANKMY1|ENSG00000144504.15|ankyrin repeat and MYND domain containing 1
hg38_v1_chr11_-_62573846_62573930	0.0797846	GLI3	ENST00000329251.5|EEF1G|ENSG00000254772.10|eukaryotic translation elongation factor 1 gamma
hg38_v1_chr1_+_2476315_2476334	0.0796753	GLI3	ENST00000419816.6|PLCH2|ENSG00000149527.18|phospholipase C eta 2
hg38_v1_chr20_+_841238_841295	0.0795764	GLI3	ENST00000541082.2|FAM110A|ENSG00000125898.13|family with sequence similarity 110 member A
hg38_v1_chr11_-_6619353_6619448	0.0795019	GLI3	ENST00000642892.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000645620.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000533371.6|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000647152.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000644810.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000299427.12|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000682424.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000644218.1|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000528657.2|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1	ENST00000531754.2|TPP1|ENSG00000166340.18|tripeptidyl peptidase 1
hg38_v1_chr14_-_106557465_106557481	0.0794295	GLI3	ENST00000390625.3|IGHV3-49|ENSG00000211965.4|immunoglobulin heavy variable 3-49
hg38_v1_chr2_+_28981295_28981356	0.0786328	GLI3	ENST00000379558.5|TOGARAM2|ENSG00000189350.13|TOG array regulator of axonemal microtubules 2
hg38_v1_chr20_-_9839026_9839081	0.078624	GLI3	ENST00000378429.3|PAK5|ENSG00000101349.17|p21 (RAC1) activated kinase 5	ENST00000353224.10|PAK5|ENSG00000101349.17|p21 (RAC1) activated kinase 5
hg38_v1_chr11_-_61891381_61891460	0.0786212	GLI3	ENST00000525588.5|FADS3|ENSG00000221968.9|fatty acid desaturase 3
hg38_v1_chr14_+_104085691_104085719	0.078098	GLI3	ENST00000546892.6|ASPG|ENSG00000166183.16|asparaginase	ENST00000551177.6|ASPG|ENSG00000166183.16|asparaginase
hg38_v1_chr12_-_11310420_11310438	0.0778903	GLI3	ENST00000621732.4|PRB4|ENSG00000230657.8|proline rich protein BstNI subfamily 4	ENST00000445719.2|PRB4|ENSG00000230657.8|proline rich protein BstNI subfamily 4	ENST00000279575.7|PRB4|ENSG00000230657.8|proline rich protein BstNI subfamily 4
hg38_v1_chr19_+_676385_676403	0.0775042	GLI3	ENST00000166139.9|FSTL3|ENSG00000070404.10|follistatin like 3
hg38_v1_chr19_-_3786408_3786415	0.0773045	GLI3	ENST00000395040.6|MATK|ENSG00000007264.15|megakaryocyte-associated tyrosine kinase
hg38_v1_chr19_+_57280438_57280507	0.0769971	GLI3	ENST00000360338.4|ZNF460|ENSG00000197714.9|zinc finger protein 460
hg38_v1_chr12_+_51238854_51238886	0.0768792	GLI3	ENST00000549732.6|DAZAP2|ENSG00000183283.16|DAZ associated protein 2	ENST00000604900.5|DAZAP2|ENSG00000183283.16|DAZ associated protein 2
hg38_v1_chr17_+_7420315_7420339	0.0766983	GLI3	ENST00000323675.4|SPEM1|ENSG00000181323.8|spermatid maturation 1
hg38_v1_chrX_+_51710512_51710512	0.0766282	GLI3	ENST00000602548.2|CENPVL1|ENSG00000223591.5|centromere protein V like 1
hg38_v1_chrX_-_139642518_139642682	0.0761706	GLI3	ENST00000370573.8|MCF2|ENSG00000101977.21|MCF.2 cell line derived transforming sequence	ENST00000338585.6|MCF2|ENSG00000101977.21|MCF.2 cell line derived transforming sequence
hg38_v1_chrX_-_9033310_9033310	0.0760275	GLI3	ENST00000362066.7|FAM9B|ENSG00000177138.17|family with sequence similarity 9 member B
hg38_v1_chr11_-_3057386_3057433	0.0757588	GLI3	ENST00000529772.5|CARS1|ENSG00000110619.18|cysteinyl-tRNA synthetase 1	ENST00000278224.13|CARS1|ENSG00000110619.18|cysteinyl-tRNA synthetase 1	ENST00000380525.9|CARS1|ENSG00000110619.18|cysteinyl-tRNA synthetase 1
hg38_v1_chr12_-_6689244_6689337	0.0753606	GLI3	ENST00000361959.7|ZNF384|ENSG00000126746.18|zinc finger protein 384	ENST00000436774.6|ZNF384|ENSG00000126746.18|zinc finger protein 384	ENST00000544482.1|ZNF384|ENSG00000126746.18|zinc finger protein 384
hg38_v1_chr10_-_125161019_125161045	0.0750001	GLI3	ENST00000411419.6|CTBP2|ENSG00000175029.17|C-terminal binding protein 2
hg38_v1_chr12_-_103957122_103957273	0.0748784	GLI3	ENST00000552940.1|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000547975.5|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000549478.1|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000546540.1|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000378090.9|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000546819.1|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73	ENST00000547945.5|C12orf73|ENSG00000204954.10|chromosome 12 open reading frame 73
hg38_v1_chr1_+_923914_923933	0.0745754	GLI3	ENST00000616016.5|SAMD11|ENSG00000187634.13|sterile alpha motif domain containing 11	ENST00000618323.5|SAMD11|ENSG00000187634.13|sterile alpha motif domain containing 11
hg38_v1_chr19_+_19538248_19538301	0.0743139	GLI3	ENST00000586018.5|CILP2|ENSG00000160161.9|cartilage intermediate layer protein 2	ENST00000291495.5|CILP2|ENSG00000160161.9|cartilage intermediate layer protein 2
hg38_v1_chr20_-_13638903_13638938	0.074289	GLI3	ENST00000455532.5|TASP1|ENSG00000089123.16|taspase 1	ENST00000337743.9|TASP1|ENSG00000089123.16|taspase 1
hg38_v1_chr11_-_61917490_61917602	0.0742713	GLI3	ENST00000394836.7|RAB3IL1|ENSG00000167994.13|RAB3A interacting protein like 1
hg38_v1_chr3_-_136196305_136196352	0.0741762	GLI3	ENST00000473093.1|MSL2|ENSG00000174579.4|MSL complex subunit 2	ENST00000309993.3|MSL2|ENSG00000174579.4|MSL complex subunit 2
hg38_v1_chr19_-_54281145_54281184	0.0736269	GLI3	ENST00000434421.5|LILRB2|ENSG00000131042.15|leukocyte immunoglobulin like receptor B2	ENST00000391749.4|LILRB2|ENSG00000131042.15|leukocyte immunoglobulin like receptor B2
hg38_v1_chr14_+_71586261_71586286	0.0735478	GLI3	ENST00000358550.6|SIPA1L1|ENSG00000197555.10|signal induced proliferation associated 1 like 1
hg38_v1_chr19_-_51065067_51065114	0.0733809	GLI3	ENST00000595547.5|KLK13|ENSG00000167759.13|kallikrein related peptidase 13	ENST00000335422.3|KLK13|ENSG00000167759.13|kallikrein related peptidase 13	ENST00000595793.6|KLK13|ENSG00000167759.13|kallikrein related peptidase 13	ENST00000596955.1|KLK13|ENSG00000167759.13|kallikrein related peptidase 13
hg38_v1_chr6_+_31498071_31498086	0.0733066	GLI3	ENST00000399150.7|MICB|ENSG00000204516.10|MHC class I polypeptide-related sequence B
hg38_v1_chr3_+_47380995_47381072	0.0732343	GLI3	ENST00000456221.5|PTPN23|ENSG00000076201.16|protein tyrosine phosphatase non-receptor type 23	ENST00000265562.5|PTPN23|ENSG00000076201.16|protein tyrosine phosphatase non-receptor type 23
hg38_v1_chr6_+_35468393_35468417	0.0731292	GLI3	ENST00000322203.7|RPL10A|ENSG00000198755.11|ribosomal protein L10a
hg38_v1_chr6_+_151494007_151494078	0.0731265	GLI3	ENST00000239374.8|CCDC170|ENSG00000120262.10|coiled-coil domain containing 170
hg38_v1_chr3_-_53891836_53891962	0.0730647	GLI3	ENST00000495461.6|SELENOK|ENSG00000113811.11|selenoprotein K	ENST00000541726.5|SELENOK|ENSG00000113811.11|selenoprotein K
hg38_v1_chrX_-_11290478_11290490	0.0729658	GLI3	ENST00000380717.7|ARHGAP6|ENSG00000047648.23|Rho GTPase activating protein 6
hg38_v1_chr17_+_32928126_32928210	0.0725754	GLI3	ENST00000579849.6|TMEM98|ENSG00000006042.12|transmembrane protein 98	ENST00000578289.5|TMEM98|ENSG00000006042.12|transmembrane protein 98	ENST00000439138.5|TMEM98|ENSG00000006042.12|transmembrane protein 98
hg38_v1_chr12_+_57459782_57459796	0.0724868	GLI3	ENST00000228682.7|GLI1|ENSG00000111087.10|GLI family zinc finger 1
hg38_v1_chr21_-_17612842_17612910	0.0724604	GLI3	ENST00000339775.10|BTG3|ENSG00000154640.15|BTG anti-proliferation factor 3	ENST00000348354.7|BTG3|ENSG00000154640.15|BTG anti-proliferation factor 3
hg38_v1_chr16_-_2196575_2196633	0.0723244	GLI3	ENST00000343516.8|CASKIN1|ENSG00000167971.16|CASK interacting protein 1
hg38_v1_chr15_+_73994777_73994803	0.072018	GLI3	ENST00000563500.5|PML|ENSG00000140464.20|PML nuclear body scaffold
hg38_v1_chr13_+_27251545_27251566	0.0718284	GLI3	ENST00000311549.11|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr2_+_170816562_170816743	0.0718232	GLI3	ENST00000625689.2|GAD1|ENSG00000128683.14|glutamate decarboxylase 1	ENST00000375272.5|GAD1|ENSG00000128683.14|glutamate decarboxylase 1
hg38_v1_chr5_-_54985579_54985601	0.071627	GLI3	ENST00000381405.5|ESM1|ENSG00000164283.13|endothelial cell specific molecule 1	ENST00000381403.4|ESM1|ENSG00000164283.13|endothelial cell specific molecule 1
hg38_v1_chr2_+_106487349_106487413	0.0715576	GLI3	ENST00000643224.2|CD8B2|ENSG00000254126.8|CD8b2 molecule	ENST00000416057.2|CD8B2|ENSG00000254126.8|CD8b2 molecule
hg38_v1_chrX_-_64395417_64395467	0.0714023	GLI3	ENST00000374852.4|MTMR8|ENSG00000102043.16|myotubularin related protein 8
hg38_v1_chr17_-_752249_752295	0.0713122	GLI3	ENST00000319004.6|GEMIN4|ENSG00000179409.11|gem nuclear organelle associated protein 4
hg38_v1_chr2_+_201071984_201072052	0.0709116	GLI3	ENST00000237889.9|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3	ENST00000433898.5|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3	ENST00000684175.1|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3	ENST00000682325.1|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3	ENST00000454214.1|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3	ENST00000684420.1|NDUFB3|ENSG00000119013.10|NADH:ubiquinone oxidoreductase subunit B3
hg38_v1_chr1_+_200739542_200739616	0.0708143	GLI3	ENST00000358823.6|CAMSAP2|ENSG00000118200.14|calmodulin regulated spectrin associated protein family member 2
hg38_v1_chr12_-_8066331_8066383	0.0707785	GLI3	ENST00000546241.1|C3AR1|ENSG00000171860.5|complement C3a receptor 1	ENST00000307637.5|C3AR1|ENSG00000171860.5|complement C3a receptor 1
hg38_v1_chr17_+_7307579_7307601	0.0705212	GLI3	ENST00000572815.5|EIF5A|ENSG00000132507.18|eukaryotic translation initiation factor 5A
hg38_v1_chr6_-_99515410_99515489	0.0704588	GLI3	ENST00000369233.6|USP45|ENSG00000123552.18|ubiquitin specific peptidase 45	ENST00000500704.7|USP45|ENSG00000123552.18|ubiquitin specific peptidase 45	ENST00000329966.10|USP45|ENSG00000123552.18|ubiquitin specific peptidase 45
hg38_v1_chr10_-_101229449_101229465	0.0704135	GLI3	ENST00000370193.4|LBX1|ENSG00000138136.7|ladybird homeobox 1
hg38_v1_chr11_-_64742937_64742973	0.0703103	GLI3	ENST00000394428.5|RASGRP2|ENSG00000068831.19|RAS guanyl releasing protein 2	ENST00000394429.5|RASGRP2|ENSG00000068831.19|RAS guanyl releasing protein 2
hg38_v1_chr17_+_7281711_7281757	0.0699681	GLI3	ENST00000317370.13|SLC2A4|ENSG00000181856.15|solute carrier family 2 member 4	ENST00000571308.5|SLC2A4|ENSG00000181856.15|solute carrier family 2 member 4
hg38_v1_chr6_-_166956537_166956558	0.0694191	GLI3	ENST00000508775.6|RNASET2|ENSG00000026297.17|ribonuclease T2
hg38_v1_chr11_-_30586272_30586320	0.0690824	GLI3	ENST00000448418.6|MPPED2|ENSG00000066382.17|metallophosphoesterase domain containing 2
hg38_v1_chr15_+_83447328_83447347	0.0690437	GLI3	ENST00000427482.7|SH3GL3|ENSG00000140600.17|SH3 domain containing GRB2 like 3, endophilin A3
hg38_v1_chr13_+_19958760_19958783	0.0689218	GLI3	ENST00000382871.3|ZMYM2|ENSG00000121741.17|zinc finger MYM-type containing 2
hg38_v1_chr19_+_35651245_35651312	0.0689156	GLI3	ENST00000590618.1|COX6B1|ENSG00000126267.11|cytochrome c oxidase subunit 6B1
hg38_v1_chr16_-_981259_981326	0.0687906	GLI3	ENST00000563837.1|CEROX1|ENSG00000260807.7|cytoplasmic endogenous regulator of oxidative phosphorylation 1	ENST00000570014.5|LMF1|ENSG00000103227.19|lipase maturation factor 1	ENST00000563863.5|CEROX1|ENSG00000260807.7|cytoplasmic endogenous regulator of oxidative phosphorylation 1	ENST00000565069.5|CEROX1|ENSG00000260807.7|cytoplasmic endogenous regulator of oxidative phosphorylation 1
hg38_v1_chr1_-_182604379_182604399	0.0686798	GLI3	ENST00000367558.6|RGS16|ENSG00000143333.7|regulator of G protein signaling 16
hg38_v1_chr6_+_31403553_31403672	0.0686703	GLI3	ENST00000449934.7|MICA|ENSG00000204520.14|MHC class I polypeptide-related sequence A	ENST00000421350.1|MICA|ENSG00000204520.14|MHC class I polypeptide-related sequence A
hg38_v1_chr1_+_47438036_47438112	0.0686327	GLI3	ENST00000334793.6|FOXD2|ENSG00000186564.6|forkhead box D2
hg38_v1_chr6_+_89080739_89080761	0.0684115	GLI3	ENST00000369472.1|PNRC1|ENSG00000146278.11|proline rich nuclear receptor coactivator 1	ENST00000336032.4|PNRC1|ENSG00000146278.11|proline rich nuclear receptor coactivator 1
hg38_v1_chr12_-_6493718_6493856	0.0679038	GLI3	ENST00000543959.5|MRPL51|ENSG00000111639.8|mitochondrial ribosomal protein L51	ENST00000543164.5|MRPL51|ENSG00000111639.8|mitochondrial ribosomal protein L51	ENST00000543703.1|MRPL51|ENSG00000111639.8|mitochondrial ribosomal protein L51	ENST00000537701.5|MRPL51|ENSG00000111639.8|mitochondrial ribosomal protein L51
hg38_v1_chr16_+_2682515_2682540	0.0679028	GLI3	ENST00000301738.9|KCTD5|ENSG00000167977.9|potassium channel tetramerization domain containing 5	ENST00000564195.1|KCTD5|ENSG00000167977.9|potassium channel tetramerization domain containing 5
hg38_v1_chr11_-_1763894_1763957	0.0678778	GLI3	ENST00000637915.1|CTSD|ENSG00000117984.15|cathepsin D	ENST00000637815.2|CTSD|ENSG00000117984.15|cathepsin D	ENST00000236671.7|CTSD|ENSG00000117984.15|cathepsin D	ENST00000636571.1|CTSD|ENSG00000117984.15|cathepsin D	ENST00000438213.6|CTSD|ENSG00000117984.15|cathepsin D	ENST00000636397.1|ENSG00000250644.3|ENSG00000250644.3|novel protein	ENST00000637387.1|CTSD|ENSG00000117984.15|cathepsin D	ENST00000636843.1|CTSD|ENSG00000117984.15|cathepsin D	ENST00000636615.1|ENSG00000250644.3|ENSG00000250644.3|novel protein
hg38_v1_chr9_-_92670124_92670162	0.0678727	GLI3	ENST00000287996.8|IPPK|ENSG00000127080.10|inositol-pentakisphosphate 2-kinase
hg38_v1_chr19_-_17460804_17460881	0.067668	GLI3	ENST00000594663.1|ENSG00000269035.1|ENSG00000269035.1|novel protein
hg38_v1_chr2_+_126898876_126898906	0.0672776	GLI3	ENST00000568484.6|TEX51|ENSG00000237524.10|testis expressed 51	ENST00000636457.1|TEX51|ENSG00000237524.10|testis expressed 51
hg38_v1_chr13_-_19503277_19503279	0.0672728	GLI3	ENST00000382978.5|TPTE2|ENSG00000132958.17|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	ENST00000400230.6|TPTE2|ENSG00000132958.17|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	ENST00000255310.10|TPTE2|ENSG00000132958.17|transmembrane phosphoinositide 3-phosphatase and tensin homolog 2
hg38_v1_chr10_-_60572599_60572670	0.0671788	GLI3	ENST00000503366.5|ANK3|ENSG00000151150.22|ankyrin 3
hg38_v1_chr1_-_34985288_34985353	0.067162	GLI3	ENST00000417456.1|ENSG00000284773.1|ENSG00000284773.1|novel protein	ENST00000373337.3|TMEM35B|ENSG00000243749.1|transmembrane protein 35B
hg38_v1_chr3_+_111859180_111859275	0.0670046	GLI3	ENST00000412622.5|PHLDB2|ENSG00000144824.21|pleckstrin homology like domain family B member 2	ENST00000431670.7|PHLDB2|ENSG00000144824.21|pleckstrin homology like domain family B member 2
hg38_v1_chr5_+_114433508_114433530	0.0665681	GLI3	ENST00000503706.5|KCNN2|ENSG00000080709.16|potassium calcium-activated channel subfamily N member 2
hg38_v1_chr7_-_151519891_151519907	0.0665525	GLI3	ENST00000262187.10|RHEB|ENSG00000106615.10|Ras homolog, mTORC1 binding
hg38_v1_chr19_-_18086904_18086940	0.0664738	GLI3	ENST00000322153.11|IL12RB1|ENSG00000096996.16|interleukin 12 receptor subunit beta 1	ENST00000593993.7|IL12RB1|ENSG00000096996.16|interleukin 12 receptor subunit beta 1
hg38_v1_chr9_+_32551670_32551688	0.0662039	GLI3	ENST00000450093.3|SMIM27|ENSG00000235453.11|small integral membrane protein 27
hg38_v1_chr6_-_110179702_110179718	0.0658651	GLI3	ENST00000392587.6|WASF1|ENSG00000112290.13|WASP family member 1
hg38_v1_chr6_+_46652968_46652995	0.0658373	GLI3	ENST00000371347.10|SLC25A27|ENSG00000153291.16|solute carrier family 25 member 27
hg38_v1_chr19_-_11505799_11505848	0.0657047	GLI3	ENST00000293771.10|ZNF653|ENSG00000161914.10|zinc finger protein 653
hg38_v1_chr22_-_40856565_40856665	0.0656959	GLI3	ENST00000620312.4|ST13|ENSG00000100380.14|ST13 Hsp70 interacting protein	ENST00000216218.8|ST13|ENSG00000100380.14|ST13 Hsp70 interacting protein
hg38_v1_chr7_-_29195186_29195276	0.065563	GLI3	ENST00000449801.5|CPVL|ENSG00000106066.15|carboxypeptidase vitellogenic like	ENST00000409850.5|CPVL|ENSG00000106066.15|carboxypeptidase vitellogenic like
hg38_v1_chr2_+_26848424_26848508	0.0655426	GLI3	ENST00000431402.5|DPYSL5|ENSG00000157851.17|dihydropyrimidinase like 5	ENST00000614712.4|DPYSL5|ENSG00000157851.17|dihydropyrimidinase like 5	ENST00000434719.1|DPYSL5|ENSG00000157851.17|dihydropyrimidinase like 5
hg38_v1_chr11_+_46381753_46381766	0.0654647	GLI3	ENST00000407067.1|MDK|ENSG00000110492.16|midkine
hg38_v1_chr6_-_34105965_34105984	0.0654642	GLI3	ENST00000609222.5|GRM4|ENSG00000124493.14|glutamate metabotropic receptor 4
hg38_v1_chr1_-_31065671_31065785	0.0646308	GLI3	ENST00000440538.6|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000424085.6|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000257075.9|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000373747.7|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000426105.7|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000525843.5|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1	ENST00000373742.6|PUM1|ENSG00000134644.16|pumilio RNA binding family member 1
hg38_v1_chr5_-_112419251_112419297	0.0644109	GLI3	ENST00000261486.6|EPB41L4A|ENSG00000129595.14|erythrocyte membrane protein band 4.1 like 4A
hg38_v1_chr4_-_78939352_78939449	0.0643613	GLI3	ENST00000512733.5|PAQR3|ENSG00000163291.14|progestin and adipoQ receptor family member 3
hg38_v1_chr8_-_99893622_99893692	0.0641773	GLI3	ENST00000520271.5|COX6C|ENSG00000164919.11|cytochrome c oxidase subunit 6C	ENST00000522940.5|COX6C|ENSG00000164919.11|cytochrome c oxidase subunit 6C	ENST00000523016.1|COX6C|ENSG00000164919.11|cytochrome c oxidase subunit 6C	ENST00000517682.6|COX6C|ENSG00000164919.11|cytochrome c oxidase subunit 6C	ENST00000297564.6|COX6C|ENSG00000164919.11|cytochrome c oxidase subunit 6C
hg38_v1_chr6_-_43229451_43229490	0.0641742	GLI3	ENST00000509253.5|DNPH1|ENSG00000112667.13|2'-deoxynucleoside 5'-phosphate N-hydrolase 1	ENST00000393987.2|DNPH1|ENSG00000112667.13|2'-deoxynucleoside 5'-phosphate N-hydrolase 1	ENST00000230431.11|DNPH1|ENSG00000112667.13|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
hg38_v1_chr18_-_36828771_36828842	0.0635798	GLI3	ENST00000589049.5|TPGS2|ENSG00000134779.15|tubulin polyglutamylase complex subunit 2	ENST00000587129.5|TPGS2|ENSG00000134779.15|tubulin polyglutamylase complex subunit 2	ENST00000590842.5|TPGS2|ENSG00000134779.15|tubulin polyglutamylase complex subunit 2
hg38_v1_chr16_-_2268054_2268103	0.0634504	GLI3	ENST00000561518.5|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000561718.5|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000567147.5|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000562690.5|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000569598.6|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1
hg38_v1_chrX_+_48683763_48683850	0.0633934	GLI3	ENST00000376701.5|WAS|ENSG00000015285.11|WASP actin nucleation promoting factor
hg38_v1_chr17_-_3592877_3592877	0.0631067	GLI3	ENST00000399756.8|TRPV1|ENSG00000196689.13|transient receptor potential cation channel subfamily V member 1
hg38_v1_chr16_+_31033781_31033805	0.0630669	GLI3	ENST00000613541.1|STX4|ENSG00000103496.15|syntaxin 4
hg38_v1_chr11_-_71928437_71928464	0.0626254	GLI3	ENST00000529513.5|ENSG00000254469.9|ENSG00000254469.9|novel protein similar to transient receptor potential cation channel, subfamily C, member 2 TRPC2
hg38_v1_chr1_+_2476284_2476300	0.06205	GLI3	ENST00000378486.8|PLCH2|ENSG00000149527.18|phospholipase C eta 2
hg38_v1_chr2_+_113890039_113890157	0.0618979	GLI3	ENST00000443297.5|ACTR3|ENSG00000115091.12|actin related protein 3	ENST00000263238.7|ACTR3|ENSG00000115091.12|actin related protein 3	ENST00000415792.5|ACTR3|ENSG00000115091.12|actin related protein 3
hg38_v1_chr17_-_10697501_10697555	0.0616523	GLI3	ENST00000577427.1|SCO1|ENSG00000133028.12|synthesis of cytochrome C oxidase 1	ENST00000255390.10|SCO1|ENSG00000133028.12|synthesis of cytochrome C oxidase 1
hg38_v1_chr3_+_100260983_100261028	0.0615747	GLI3	ENST00000394144.9|TBC1D23|ENSG00000036054.13|TBC1 domain family member 23	ENST00000485687.5|TBC1D23|ENSG00000036054.13|TBC1 domain family member 23	ENST00000344949.9|TBC1D23|ENSG00000036054.13|TBC1 domain family member 23
hg38_v1_chr14_-_70359630_70359704	0.0613935	GLI3	ENST00000389912.7|COX16|ENSG00000133983.16|cytochrome c oxidase assembly factor COX16
hg38_v1_chr18_+_13218769_13218794	0.061298	GLI3	ENST00000677055.1|LDLRAD4|ENSG00000168675.19|low density lipoprotein receptor class A domain containing 4	ENST00000399848.7|LDLRAD4|ENSG00000168675.19|low density lipoprotein receptor class A domain containing 4
hg38_v1_chr9_-_136304084_136304103	0.0612916	GLI3	ENST00000638797.2|CCDC187|ENSG00000260220.7|coiled-coil domain containing 187	ENST00000624277.3|CCDC187|ENSG00000260220.7|coiled-coil domain containing 187
hg38_v1_chr19_-_54281082_54281116	0.0612834	GLI3	ENST00000314446.10|LILRB2|ENSG00000131042.15|leukocyte immunoglobulin like receptor B2
hg38_v1_chr7_+_87934143_87934175	0.0610435	GLI3	ENST00000398204.8|ADAM22|ENSG00000008277.15|ADAM metallopeptidase domain 22
hg38_v1_chr7_+_90403386_90403479	0.0609519	GLI3	ENST00000287916.8|CLDN12|ENSG00000157224.16|claudin 12	ENST00000480135.1|ENSG00000273299.1|ENSG00000273299.1|novel transcript	ENST00000394604.5|CLDN12|ENSG00000157224.16|claudin 12	ENST00000496677.6|CLDN12|ENSG00000157224.16|claudin 12	ENST00000394605.2|CLDN12|ENSG00000157224.16|claudin 12
hg38_v1_chr1_+_40040219_40040323	0.0607369	GLI3	ENST00000372797.7|CAP1|ENSG00000131236.18|cyclase associated actin cytoskeleton regulatory protein 1	ENST00000372802.5|CAP1|ENSG00000131236.18|cyclase associated actin cytoskeleton regulatory protein 1	ENST00000449311.5|CAP1|ENSG00000131236.18|cyclase associated actin cytoskeleton regulatory protein 1
hg38_v1_chr5_+_271616_271630	0.0606944	GLI3	ENST00000614778.4|PDCD6|ENSG00000249915.8|programmed cell death 6	ENST00000618970.4|PDCD6|ENSG00000249915.8|programmed cell death 6	ENST00000628729.2|PDCD6|ENSG00000249915.8|programmed cell death 6
hg38_v1_chr7_+_150801695_150801801	0.0606378	GLI3	ENST00000475536.5|TMEM176A|ENSG00000002933.9|transmembrane protein 176A	ENST00000468689.2|TMEM176A|ENSG00000002933.9|transmembrane protein 176A
hg38_v1_chr10_+_74176741_74176779	0.0605476	GLI3	ENST00000673027.1|ADK|ENSG00000156110.15|adenosine kinase	ENST00000372734.5|ADK|ENSG00000156110.15|adenosine kinase	ENST00000541550.6|ADK|ENSG00000156110.15|adenosine kinase
hg38_v1_chr22_+_37805218_37805236	0.0602773	GLI3	ENST00000340857.4|H1-0|ENSG00000189060.6|H1.0 linker histone
hg38_v1_chr16_-_89201635_89201651	0.0602077	GLI3	ENST00000562855.7|SLC22A31|ENSG00000259803.8|solute carrier family 22 member 31
hg38_v1_chr1_+_203626775_203626807	0.0601634	GLI3	ENST00000367218.7|ATP2B4|ENSG00000058668.15|ATPase plasma membrane Ca2+ transporting 4
hg38_v1_chr9_+_33264848_33264881	0.0596564	GLI3	ENST00000419016.6|CHMP5|ENSG00000086065.14|charged multivesicular body protein 5
hg38_v1_chr19_+_15673069_15673112	0.0595438	GLI3	ENST00000550308.6|CYP4F12|ENSG00000186204.15|cytochrome P450 family 4 subfamily F member 12	ENST00000551607.5|CYP4F12|ENSG00000186204.15|cytochrome P450 family 4 subfamily F member 12
hg38_v1_chr3_+_35639515_35639531	0.0592172	GLI3	ENST00000684406.1|ARPP21|ENSG00000172995.17|cAMP regulated phosphoprotein 21
hg38_v1_chr14_+_70907450_70907476	0.059166	GLI3	ENST00000304743.7|PCNX1|ENSG00000100731.16|pecanex 1
hg38_v1_chr8_-_134696544_134696562	0.0591252	GLI3	ENST00000520356.5|ZFAT|ENSG00000066827.16|zinc finger and AT-hook domain containing	ENST00000520727.5|ZFAT|ENSG00000066827.16|zinc finger and AT-hook domain containing	ENST00000520214.5|ZFAT|ENSG00000066827.16|zinc finger and AT-hook domain containing	ENST00000518191.1|ZFAT|ENSG00000066827.16|zinc finger and AT-hook domain containing	ENST00000429442.6|ZFAT|ENSG00000066827.16|zinc finger and AT-hook domain containing
hg38_v1_chr1_+_170935526_170935537	0.0587263	GLI3	ENST00000367758.7|MROH9|ENSG00000117501.15|maestro heat like repeat family member 9	ENST00000367759.9|MROH9|ENSG00000117501.15|maestro heat like repeat family member 9
hg38_v1_chr4_-_16226460_16226485	0.0585931	GLI3	ENST00000405303.7|TAPT1|ENSG00000169762.17|transmembrane anterior posterior transformation 1
hg38_v1_chr6_-_149890900_149891034	0.0585613	GLI3	ENST00000529948.1|RAET1E|ENSG00000164520.11|retinoic acid early transcript 1E	ENST00000357183.8|RAET1E|ENSG00000164520.11|retinoic acid early transcript 1E	ENST00000367363.3|RAET1E|ENSG00000164520.11|retinoic acid early transcript 1E
hg38_v1_chr5_-_1345084_1345105	0.0585188	GLI3	ENST00000320895.10|CLPTM1L|ENSG00000049656.14|CLPTM1 like
hg38_v1_chr10_-_101695119_101695259	0.0582322	GLI3	ENST00000331272.9|FBXW4|ENSG00000107829.15|F-box and WD repeat domain containing 4	ENST00000664783.1|FBXW4|ENSG00000107829.15|F-box and WD repeat domain containing 4
hg38_v1_chr7_+_101815904_101815963	0.0581282	GLI3	ENST00000437600.9|CUX1|ENSG00000257923.12|cut like homeobox 1	ENST00000645010.1|CUX1|ENSG00000257923.12|cut like homeobox 1	ENST00000646649.1|CUX1|ENSG00000257923.12|cut like homeobox 1
hg38_v1_chr22_-_31292445_31292534	0.0579499	GLI3	ENST00000402249.7|PIK3IP1|ENSG00000100100.13|phosphoinositide-3-kinase interacting protein 1	ENST00000215912.10|PIK3IP1|ENSG00000100100.13|phosphoinositide-3-kinase interacting protein 1	ENST00000443175.1|PIK3IP1|ENSG00000100100.13|phosphoinositide-3-kinase interacting protein 1	ENST00000441972.5|PIK3IP1|ENSG00000100100.13|phosphoinositide-3-kinase interacting protein 1
hg38_v1_chr1_+_203626813_203626842	0.0578377	GLI3	ENST00000357681.10|ATP2B4|ENSG00000058668.15|ATPase plasma membrane Ca2+ transporting 4
hg38_v1_chr8_+_22245125_22245235	0.0577665	GLI3	ENST00000306433.9|POLR3D|ENSG00000168495.13|RNA polymerase III subunit D	ENST00000519237.5|POLR3D|ENSG00000168495.13|RNA polymerase III subunit D	ENST00000397802.8|POLR3D|ENSG00000168495.13|RNA polymerase III subunit D
hg38_v1_chr2_+_127701490_127701532	0.0573112	GLI3	ENST00000310981.6|SFT2D3|ENSG00000173349.6|SFT2 domain containing 3
hg38_v1_chrX_-_48835553_48835623	0.0568658	GLI3	ENST00000218230.6|PCSK1N|ENSG00000102109.9|proprotein convertase subtilisin/kexin type 1 inhibitor
hg38_v1_chr16_-_88856909_88856981	0.0568175	GLI3	ENST00000569433.1|GALNS|ENSG00000141012.13|galactosamine (N-acetyl)-6-sulfatase	ENST00000268695.10|GALNS|ENSG00000141012.13|galactosamine (N-acetyl)-6-sulfatase	ENST00000568311.1|GALNS|ENSG00000141012.13|galactosamine (N-acetyl)-6-sulfatase
hg38_v1_chr3_+_46163465_46163604	0.0561549	GLI3	ENST00000357422.2|CCR3|ENSG00000183625.16|C-C motif chemokine receptor 3
hg38_v1_chr8_+_22042790_22042854	0.0561467	GLI3	ENST00000359441.4|FGF17|ENSG00000158815.11|fibroblast growth factor 17
hg38_v1_chr20_+_44714835_44714847	0.0561225	GLI3	ENST00000372868.6|CCN5|ENSG00000064205.11|cellular communication network factor 5
hg38_v1_chr7_+_90211686_90211780	0.0560616	GLI3	ENST00000287908.7|STEAP2|ENSG00000157214.14|STEAP2 metalloreductase	ENST00000394621.7|STEAP2|ENSG00000157214.14|STEAP2 metalloreductase	ENST00000394626.5|STEAP2|ENSG00000157214.14|STEAP2 metalloreductase
hg38_v1_chr21_-_7829926_7829926	0.0558576	GLI3	ENST00000622690.4|KCNE1B|ENSG00000276289.5|potassium voltage-gated channel subfamily E regulatory subunit 1B
hg38_v1_chr1_+_207321668_207321791	0.0557883	GLI3	ENST00000367064.9|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000314754.12|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000367067.8|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000644836.1|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000343420.6|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)
hg38_v1_chr7_+_157336961_157336970	0.0552751	GLI3	ENST00000429029.6|DNAJB6|ENSG00000105993.15|DnaJ heat shock protein family (Hsp40) member B6
hg38_v1_chr6_-_116279837_116279964	0.0548988	GLI3	ENST00000368608.4|TSPYL1|ENSG00000189241.8|TSPY like 1
hg38_v1_chr17_-_2711633_2711733	0.0546689	GLI3	ENST00000435359.5|CLUH|ENSG00000132361.18|clustered mitochondria homolog
hg38_v1_chr17_-_19716604_19716730	0.0545878	GLI3	ENST00000325411.9|SLC47A2|ENSG00000180638.19|solute carrier family 47 member 2	ENST00000350657.9|SLC47A2|ENSG00000180638.19|solute carrier family 47 member 2
hg38_v1_chrX_-_48196763_48196797	0.0542748	GLI3	ENST00000311798.5|SSX5|ENSG00000165583.16|SSX family member 5	ENST00000347757.6|SSX5|ENSG00000165583.16|SSX family member 5
hg38_v1_chrX_+_104040283_104040283	0.054044	GLI3	ENST00000417637.1|H2BW2|ENSG00000101812.15|H2B.W histone 2
hg38_v1_chr7_-_100168602_100168645	0.0539082	GLI3	ENST00000423751.2|GAL3ST4|ENSG00000197093.11|galactose-3-O-sulfotransferase 4	ENST00000360039.9|GAL3ST4|ENSG00000197093.11|galactose-3-O-sulfotransferase 4
hg38_v1_chr6_+_35737078_35737097	0.0538798	GLI3	ENST00000288065.6|ARMC12|ENSG00000157343.9|armadillo repeat containing 12
hg38_v1_chr2_+_233692881_233692905	0.053811	GLI3	ENST00000305139.11|UGT1A6|ENSG00000167165.19|UDP glucuronosyltransferase family 1 member A6
hg38_v1_chr9_+_133534807_133534853	0.0537213	GLI3	ENST00000393060.1|ADAMTSL2|ENSG00000197859.11|ADAMTS like 2
hg38_v1_chr1_+_204870831_204870868	0.0535486	GLI3	ENST00000404076.5|NFASC|ENSG00000163531.17|neurofascin	ENST00000539706.6|NFASC|ENSG00000163531.17|neurofascin
hg38_v1_chr12_+_49972837_49972952	0.0535399	GLI3	ENST00000618286.1|AQP6|ENSG00000086159.13|aquaporin 6	ENST00000315520.10|AQP6|ENSG00000086159.13|aquaporin 6
hg38_v1_chr17_+_78378633_78378678	0.0534903	GLI3	ENST00000262764.11|PGS1|ENSG00000087157.19|phosphatidylglycerophosphate synthase 1	ENST00000589689.5|PGS1|ENSG00000087157.19|phosphatidylglycerophosphate synthase 1	ENST00000592043.5|PGS1|ENSG00000087157.19|phosphatidylglycerophosphate synthase 1	ENST00000587356.1|PGS1|ENSG00000087157.19|phosphatidylglycerophosphate synthase 1
hg38_v1_chr11_-_35420017_35420031	0.0532716	GLI3	ENST00000643000.1|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2	ENST00000646099.1|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2	ENST00000647372.1|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2	ENST00000642578.1|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2
hg38_v1_chr15_-_49155574_49155661	0.053122	GLI3	ENST00000558843.5|COPS2|ENSG00000166200.15|COP9 signalosome subunit 2	ENST00000388901.10|COPS2|ENSG00000166200.15|COP9 signalosome subunit 2	ENST00000542928.5|COPS2|ENSG00000166200.15|COP9 signalosome subunit 2	ENST00000561248.1|COPS2|ENSG00000166200.15|COP9 signalosome subunit 2	ENST00000299259.10|COPS2|ENSG00000166200.15|COP9 signalosome subunit 2
hg38_v1_chr3_+_4493471_4493561	0.0530788	GLI3	ENST00000544951.6|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1	ENST00000650294.1|ITPR1|ENSG00000150995.21|inositol 1,4,5-trisphosphate receptor type 1
hg38_v1_chr16_-_2268111_2268146	0.0530385	GLI3	ENST00000301730.12|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000564822.1|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1	ENST00000320225.10|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1
hg38_v1_chr22_-_41926791_41926817	0.0529836	GLI3	ENST00000291232.5|TNFRSF13C|ENSG00000159958.7|TNF receptor superfamily member 13C
hg38_v1_chr5_+_80960694_80960739	0.0527745	GLI3	ENST00000638442.1|RASGRF2|ENSG00000113319.13|Ras protein specific guanine nucleotide releasing factor 2
hg38_v1_chr11_-_2171805_2171823	0.0526351	GLI3	ENST00000381178.5|TH|ENSG00000180176.15|tyrosine hydroxylase	ENST00000381175.5|TH|ENSG00000180176.15|tyrosine hydroxylase	ENST00000333684.9|TH|ENSG00000180176.15|tyrosine hydroxylase	ENST00000352909.8|TH|ENSG00000180176.15|tyrosine hydroxylase
hg38_v1_chr11_-_30586344_30586398	0.0525711	GLI3	ENST00000358117.10|MPPED2|ENSG00000066382.17|metallophosphoesterase domain containing 2
hg38_v1_chr20_+_49982969_49982989	0.0522474	GLI3	ENST00000244050.3|SNAI1|ENSG00000124216.4|snail family transcriptional repressor 1
hg38_v1_chr17_+_47941562_47941611	0.0521359	GLI3	ENST00000225573.5|PNPO|ENSG00000108439.11|pyridoxamine 5'-phosphate oxidase	ENST00000434554.7|PNPO|ENSG00000108439.11|pyridoxamine 5'-phosphate oxidase	ENST00000642017.2|PNPO|ENSG00000108439.11|pyridoxamine 5'-phosphate oxidase
hg38_v1_chr19_-_12513833_12513866	0.0518674	GLI3	ENST00000455490.1|ZNF709|ENSG00000242852.7|zinc finger protein 709
hg38_v1_chr6_-_30717264_30717334	0.0518581	GLI3	ENST00000376406.8|MDC1|ENSG00000137337.15|mediator of DNA damage checkpoint 1
hg38_v1_chr19_+_39498938_39498968	0.0517563	GLI3	ENST00000356433.10|DLL3|ENSG00000090932.11|delta like canonical Notch ligand 3	ENST00000596614.5|DLL3|ENSG00000090932.11|delta like canonical Notch ligand 3	ENST00000205143.4|DLL3|ENSG00000090932.11|delta like canonical Notch ligand 3
hg38_v1_chr1_+_18631006_18631129	0.0516705	GLI3	ENST00000375375.7|PAX7|ENSG00000009709.12|paired box 7
hg38_v1_chr11_-_35420050_35420066	0.0511905	GLI3	ENST00000395753.6|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2	ENST00000395750.6|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2	ENST00000645634.1|SLC1A2|ENSG00000110436.13|solute carrier family 1 member 2
hg38_v1_chr19_+_41310148_41310273	0.0511454	GLI3	ENST00000269967.4|CCDC97|ENSG00000142039.4|coiled-coil domain containing 97
hg38_v1_chr4_-_175812746_175812755	0.0511329	GLI3	ENST00000393658.6|GPM6A|ENSG00000150625.16|glycoprotein M6A
hg38_v1_chr1_+_155323911_155323940	0.0509172	GLI3	ENST00000368347.8|RUSC1|ENSG00000160753.16|RUN and SH3 domain containing 1
hg38_v1_chr16_+_560388_560400	0.050632	GLI3	ENST00000409413.4|PRR35|ENSG00000161992.6|proline rich 35
hg38_v1_chr11_-_111512339_111512367	0.050545	GLI3	ENST00000525791.5|BTG4|ENSG00000137707.13|BTG anti-proliferation factor 4	ENST00000456861.2|BTG4|ENSG00000137707.13|BTG anti-proliferation factor 4	ENST00000356018.6|BTG4|ENSG00000137707.13|BTG anti-proliferation factor 4
hg38_v1_chr7_-_101217569_101217616	0.0502151	GLI3	ENST00000223127.8|PLOD3|ENSG00000106397.12|procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
hg38_v1_chr17_-_28897724_28897740	0.0502013	GLI3	ENST00000394908.9|FLOT2|ENSG00000132589.16|flotillin 2
hg38_v1_chr16_-_800705_800770	0.0501932	GLI3	ENST00000248150.5|GNG13|ENSG00000127588.5|G protein subunit gamma 13
hg38_v1_chr20_-_52191751_52191789	0.0499389	GLI3	ENST00000346617.8|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein	ENST00000371515.8|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein	ENST00000371518.6|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein	ENST00000216923.5|ZFP64|ENSG00000020256.20|ZFP64 zinc finger protein
hg38_v1_chr11_-_1762403_1762494	0.0499082	GLI3	ENST00000367196.4|CTSD|ENSG00000117984.15|cathepsin D
hg38_v1_chr19_+_1275997_1276037	0.0493723	GLI3	ENST00000469144.5|FAM174C|ENSG00000228300.14|family with sequence similarity 174 member C
hg38_v1_chr9_+_33265013_33265067	0.0492118	GLI3	ENST00000223500.9|CHMP5|ENSG00000086065.14|charged multivesicular body protein 5
hg38_v1_chr19_+_54115726_54115809	0.0491115	GLI3	ENST00000445811.5|PRPF31|ENSG00000105618.14|pre-mRNA processing factor 31	ENST00000321030.9|PRPF31|ENSG00000105618.14|pre-mRNA processing factor 31	ENST00000445124.5|PRPF31|ENSG00000105618.14|pre-mRNA processing factor 31	ENST00000447810.5|PRPF31|ENSG00000105618.14|pre-mRNA processing factor 31
hg38_v1_chr14_+_95876762_95876778	0.0488438	GLI3	ENST00000503525.2|TUNAR|ENSG00000250366.3|TCL1 upstream neural differentiation-associated RNA
hg38_v1_chr11_-_8964380_8964461	0.0487763	GLI3	ENST00000528117.5|TMEM9B|ENSG00000175348.11|TMEM9 domain family member B	ENST00000309134.9|TMEM9B|ENSG00000175348.11|TMEM9 domain family member B	ENST00000534025.6|TMEM9B|ENSG00000175348.11|TMEM9 domain family member B
hg38_v1_chr9_-_133336169_133336217	0.048678	GLI3	ENST00000372022.6|SURF6|ENSG00000148296.7|surfeit 6
hg38_v1_chr14_+_104985758_104985816	0.0484971	GLI3	ENST00000551606.5|CLBA1|ENSG00000140104.14|clathrin binding box of aftiphilin containing 1	ENST00000547315.6|CLBA1|ENSG00000140104.14|clathrin binding box of aftiphilin containing 1
hg38_v1_chr14_-_38256074_38256101	0.048359	GLI3	ENST00000342213.3|CLEC14A|ENSG00000176435.7|C-type lectin domain containing 14A
hg38_v1_chr7_+_101218146_101218191	0.0483259	GLI3	ENST00000305105.3|ZNHIT1|ENSG00000106400.12|zinc finger HIT-type containing 1
hg38_v1_chrX_+_73447042_73447072	0.0477758	GLI3	ENST00000373514.3|CDX4|ENSG00000131264.4|caudal type homeobox 4
hg38_v1_chr11_+_108008880_108008976	0.0477046	GLI3	ENST00000393094.7|CUL5|ENSG00000166266.14|cullin 5
hg38_v1_chr2_+_60756226_60756283	0.0476216	GLI3	ENST00000238714.8|PAPOLG|ENSG00000115421.13|poly(A) polymerase gamma
hg38_v1_chrX_-_112840815_112840843	0.0474983	GLI3	ENST00000304758.5|AMOT|ENSG00000126016.17|angiomotin	ENST00000371959.9|AMOT|ENSG00000126016.17|angiomotin
hg38_v1_chrY_-_23199008_23199010	0.0473527	GLI3	ENST00000405239.6|DAZ1|ENSG00000188120.16|deleted in azoospermia 1	ENST00000426000.6|DAZ1|ENSG00000188120.16|deleted in azoospermia 1	ENST00000540248.5|DAZ1|ENSG00000188120.16|deleted in azoospermia 1
hg38_v1_chr2_+_126898908_126898920	0.0471523	GLI3	ENST00000450035.5|TEX51|ENSG00000237524.10|testis expressed 51
hg38_v1_chr20_-_63547741_63547752	0.0470783	GLI3	ENST00000217188.2|SRMS|ENSG00000125508.4|src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
hg38_v1_chr3_-_58587033_58587113	0.0470761	GLI3	ENST00000447756.2|FAM107A|ENSG00000168309.18|family with sequence similarity 107 member A
hg38_v1_chr11_+_45847406_45847493	0.0470579	GLI3	ENST00000443527.6|CRY2|ENSG00000121671.12|cryptochrome circadian regulator 2	ENST00000616623.4|CRY2|ENSG00000121671.12|cryptochrome circadian regulator 2	ENST00000616080.2|CRY2|ENSG00000121671.12|cryptochrome circadian regulator 2
hg38_v1_chrX_-_47629845_47629965	0.0469737	GLI3	ENST00000469388.1|CFP|ENSG00000126759.14|complement factor properdin	ENST00000396992.8|CFP|ENSG00000126759.14|complement factor properdin	ENST00000377005.6|CFP|ENSG00000126759.14|complement factor properdin
hg38_v1_chr1_+_6624842_6624878	0.0466118	GLI3	ENST00000054650.8|THAP3|ENSG00000041988.15|THAP domain containing 3
hg38_v1_chr1_-_37692205_37692281	0.0462464	GLI3	ENST00000477060.1|C1orf109|ENSG00000116922.15|chromosome 1 open reading frame 109	ENST00000491981.5|C1orf109|ENSG00000116922.15|chromosome 1 open reading frame 109	ENST00000488137.5|C1orf109|ENSG00000116922.15|chromosome 1 open reading frame 109	ENST00000619962.1|C1orf109|ENSG00000116922.15|chromosome 1 open reading frame 109
hg38_v1_chr11_+_46381698_46381746	0.0462304	GLI3	ENST00000395565.5|MDK|ENSG00000110492.16|midkine
hg38_v1_chr22_-_45977154_45977169	0.0460608	GLI3	ENST00000339464.9|WNT7B|ENSG00000188064.10|Wnt family member 7B
hg38_v1_chr12_-_112409550_112409653	0.0460427	GLI3	ENST00000550566.6|RPL6|ENSG00000089009.16|ribosomal protein L6	ENST00000553213.2|RPL6|ENSG00000089009.16|ribosomal protein L6	ENST00000424576.6|RPL6|ENSG00000089009.16|ribosomal protein L6	ENST00000202773.14|RPL6|ENSG00000089009.16|ribosomal protein L6
hg38_v1_chr1_+_203128279_203128373	0.0460141	GLI3	ENST00000367235.1|ADORA1|ENSG00000163485.17|adenosine A1 receptor	ENST00000618295.1|ADORA1|ENSG00000163485.17|adenosine A1 receptor
hg38_v1_chr21_-_7829587_7829632	0.0458898	GLI3	ENST00000623803.1|KCNE1B|ENSG00000276289.5|potassium voltage-gated channel subfamily E regulatory subunit 1B	ENST00000618699.3|KCNE1B|ENSG00000276289.5|potassium voltage-gated channel subfamily E regulatory subunit 1B
hg38_v1_chr2_-_73642413_73642434	0.0453758	GLI3	ENST00000272425.4|NAT8|ENSG00000144035.4|N-acetyltransferase 8 (putative)
hg38_v1_chr2_+_79025709_79025735	0.0449158	GLI3	ENST00000409471.1|REG3G|ENSG00000143954.13|regenerating family member 3 gamma
hg38_v1_chrX_+_72776873_72776901	0.0448404	GLI3	ENST00000334036.10|DMRTC1B|ENSG00000184911.15|DMRT like family C1B
hg38_v1_chr16_+_715092_715174	0.0447359	GLI3	ENST00000568223.7|METRN|ENSG00000103260.9|meteorin, glial cell differentiation regulator
hg38_v1_chr16_+_84175933_84176009	0.0447349	GLI3	ENST00000569735.1|DNAAF1|ENSG00000154099.18|dynein axonemal assembly factor 1
hg38_v1_chr7_+_150801522_150801568	0.0447183	GLI3	ENST00000461345.5|TMEM176A|ENSG00000002933.9|transmembrane protein 176A
hg38_v1_chrX_-_149631787_149631912	0.0444278	GLI3	ENST00000600449.8|TMEM185A|ENSG00000269556.8|transmembrane protein 185A	ENST00000611119.4|TMEM185A|ENSG00000269556.8|transmembrane protein 185A
hg38_v1_chrY_+_14056226_14056229	0.0441772	GLI3	ENST00000250823.5|VCY1B|ENSG00000129862.7|variable charge Y-linked 1B
hg38_v1_chrY_+_23219434_23219548	0.044042	GLI3	ENST00000449947.5|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000400493.6|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382449.5|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382306.6|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382294.6|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382424.8|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382431.8|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382440.5|DAZ2|ENSG00000205944.11|deleted in azoospermia 2	ENST00000382433.4|DAZ2|ENSG00000205944.11|deleted in azoospermia 2
hg38_v1_chr1_-_151826085_151826108	0.043972	GLI3	ENST00000356728.11|RORC|ENSG00000143365.19|RAR related orphan receptor C
hg38_v1_chr19_+_54874218_54874261	0.0439643	GLI3	ENST00000355524.8|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor	ENST00000391726.7|FCAR|ENSG00000186431.19|Fc fragment of IgA receptor
hg38_v1_chr11_+_66480007_66480031	0.0439406	GLI3	ENST00000531863.5|DPP3|ENSG00000254986.7|dipeptidyl peptidase 3	ENST00000532677.5|DPP3|ENSG00000254986.7|dipeptidyl peptidase 3
hg38_v1_chr7_-_5967204_5967204	0.0438964	GLI3	ENST00000337579.4|RSPH10B|ENSG00000155026.16|radial spoke head 10 homolog B
hg38_v1_chr13_+_99606651_99606703	0.0437223	GLI3	ENST00000376355.7|CLYBL|ENSG00000125246.15|citramalyl-CoA lyase	ENST00000376354.5|CLYBL|ENSG00000125246.15|citramalyl-CoA lyase	ENST00000339105.8|CLYBL|ENSG00000125246.15|citramalyl-CoA lyase
hg38_v1_chr1_+_179293714_179293756	0.043719	GLI3	ENST00000540564.5|SOAT1|ENSG00000057252.13|sterol O-acyltransferase 1	ENST00000539888.5|SOAT1|ENSG00000057252.13|sterol O-acyltransferase 1
hg38_v1_chr4_-_99657820_99657832	0.0434484	GLI3	ENST00000511828.2|C4orf54|ENSG00000248713.2|chromosome 4 open reading frame 54
hg38_v1_chr1_-_39691450_39691485	0.0424924	GLI3	ENST00000612703.3|HPCAL4|ENSG00000116983.13|hippocalcin like 4	ENST00000617690.2|HPCAL4|ENSG00000116983.13|hippocalcin like 4
hg38_v1_chr5_-_170389634_170389661	0.0423244	GLI3	ENST00000521859.1|KCNMB1|ENSG00000145936.9|potassium calcium-activated channel subfamily M regulatory beta subunit 1
hg38_v1_chrX_-_6227180_6227217	0.0419538	GLI3	ENST00000381093.6|NLGN4X|ENSG00000146938.16|neuroligin 4 X-linked
hg38_v1_chr22_+_35540810_35540864	0.041706	GLI3	ENST00000216127.5|RASD2|ENSG00000100302.7|RASD family member 2
hg38_v1_chr10_+_74151202_74151231	0.0416345	GLI3	ENST00000672429.1|ADK|ENSG00000156110.15|adenosine kinase	ENST00000539909.6|ADK|ENSG00000156110.15|adenosine kinase	ENST00000286621.7|ADK|ENSG00000156110.15|adenosine kinase
hg38_v1_chr22_-_17773976_17774016	0.040774	GLI3	ENST00000317361.11|BID|ENSG00000015475.19|BH3 interacting domain death agonist
hg38_v1_chr3_-_51875597_51875602	0.0405176	GLI3	ENST00000446461.2|IQCF5|ENSG00000214681.4|IQ motif containing F5
hg38_v1_chr9_-_129642094_129642171	0.0404526	GLI3	ENST00000277459.8|ASB6|ENSG00000148331.12|ankyrin repeat and SOCS box containing 6	ENST00000277458.5|ASB6|ENSG00000148331.12|ankyrin repeat and SOCS box containing 6	ENST00000450050.6|ASB6|ENSG00000148331.12|ankyrin repeat and SOCS box containing 6
hg38_v1_chr10_+_86654541_86654557	0.0404338	GLI3	ENST00000241891.10|OPN4|ENSG00000122375.12|opsin 4	ENST00000372071.6|OPN4|ENSG00000122375.12|opsin 4
hg38_v1_chr7_+_29194757_29194848	0.0403418	GLI3	ENST00000222792.11|CHN2|ENSG00000106069.23|chimerin 2
hg38_v1_chr22_-_30557586_30557730	0.0403238	GLI3	ENST00000338911.6|GAL3ST1|ENSG00000128242.13|galactose-3-O-sulfotransferase 1	ENST00000453479.1|GAL3ST1|ENSG00000128242.13|galactose-3-O-sulfotransferase 1
hg38_v1_chr3_-_155806260_155806298	0.0402924	GLI3	ENST00000534941.2|C3orf33|ENSG00000174928.16|chromosome 3 open reading frame 33	ENST00000340171.7|C3orf33|ENSG00000174928.16|chromosome 3 open reading frame 33
hg38_v1_chr16_-_18790260_18790308	0.0402617	GLI3	ENST00000565420.5|RPS15A|ENSG00000134419.15|ribosomal protein S15a
hg38_v1_chr7_-_100167284_100167301	0.0402228	GLI3	ENST00000413800.5|GAL3ST4|ENSG00000197093.11|galactose-3-O-sulfotransferase 4
hg38_v1_chr19_-_45815303_45815318	0.0401724	GLI3	ENST00000221538.8|RSPH6A|ENSG00000104941.8|radial spoke head 6 homolog A
hg38_v1_chr1_-_39691393_39691445	0.0400872	GLI3	ENST00000372844.8|HPCAL4|ENSG00000116983.13|hippocalcin like 4
hg38_v1_chr12_-_57110284_57110340	0.0400354	GLI3	ENST00000543873.6|STAT6|ENSG00000166888.12|signal transducer and activator of transcription 6	ENST00000554663.5|STAT6|ENSG00000166888.12|signal transducer and activator of transcription 6	ENST00000557635.5|STAT6|ENSG00000166888.12|signal transducer and activator of transcription 6
hg38_v1_chr11_-_17077647_17077683	0.0399347	GLI3	ENST00000533969.1|RPS13|ENSG00000110700.7|ribosomal protein S13	ENST00000228140.6|RPS13|ENSG00000110700.7|ribosomal protein S13	ENST00000525634.6|RPS13|ENSG00000110700.7|ribosomal protein S13
hg38_v1_chr9_+_130172343_130172442	0.0398275	GLI3	ENST00000372398.6|NCS1|ENSG00000107130.10|neuronal calcium sensor 1
hg38_v1_chr15_-_65029576_65029646	0.0398023	GLI3	ENST00000220058.9|MTFMT|ENSG00000103707.10|mitochondrial methionyl-tRNA formyltransferase
hg38_v1_chr8_-_22669084_22669148	0.0396774	GLI3	ENST00000519513.5|BIN3|ENSG00000147439.13|bridging integrator 3	ENST00000276416.11|BIN3|ENSG00000147439.13|bridging integrator 3	ENST00000520292.1|BIN3|ENSG00000147439.13|bridging integrator 3	ENST00000522268.1|BIN3|ENSG00000147439.13|bridging integrator 3
hg38_v1_chr10_+_74151232_74151240	0.0396532	GLI3	ENST00000478611.2|ADK|ENSG00000156110.15|adenosine kinase	ENST00000673352.1|ADK|ENSG00000156110.15|adenosine kinase
hg38_v1_chr19_+_49676140_49676241	0.0396222	GLI3	ENST00000527382.5|PRMT1|ENSG00000126457.22|protein arginine methyltransferase 1	ENST00000528623.5|PRMT1|ENSG00000126457.22|protein arginine methyltransferase 1
hg38_v1_chr10_+_119104075_119104119	0.0395687	GLI3	ENST00000472379.2|DENND10|ENSG00000119979.18|DENN domain containing 10	ENST00000361432.3|DENND10|ENSG00000119979.18|DENN domain containing 10	ENST00000648560.1|DENND10|ENSG00000119979.18|DENN domain containing 10
hg38_v1_chr15_-_25863304_25863371	0.0394802	GLI3	ENST00000555815.6|ATP10A|ENSG00000206190.12|ATPase phospholipid transporting 10A (putative)	ENST00000673716.1|ATP10A|ENSG00000206190.12|ATPase phospholipid transporting 10A (putative)
hg38_v1_chr20_-_1184473_1184473	0.0394284	GLI3	ENST00000381894.3|TMEM74B|ENSG00000125895.6|transmembrane protein 74B
hg38_v1_chr11_-_65047861_65047937	0.0393968	GLI3	ENST00000533842.5|NAALADL1|ENSG00000168060.16|N-acetylated alpha-linked acidic dipeptidase like 1	ENST00000532802.5|NAALADL1|ENSG00000168060.16|N-acetylated alpha-linked acidic dipeptidase like 1	ENST00000530139.2|NAALADL1|ENSG00000168060.16|N-acetylated alpha-linked acidic dipeptidase like 1	ENST00000526516.5|NAALADL1|ENSG00000168060.16|N-acetylated alpha-linked acidic dipeptidase like 1
hg38_v1_chr9_-_83956677_83956767	0.0392265	GLI3	ENST00000376344.8|C9orf64|ENSG00000165118.15|chromosome 9 open reading frame 64
hg38_v1_chr3_+_188153271_188153313	0.0390926	GLI3	ENST00000448637.5|LPP|ENSG00000145012.14|LIM domain containing preferred translocation partner in lipoma
hg38_v1_chr14_-_60165293_60165318	0.0390779	GLI3	ENST00000554101.5|DHRS7|ENSG00000100612.14|dehydrogenase/reductase 7	ENST00000557137.1|DHRS7|ENSG00000100612.14|dehydrogenase/reductase 7
hg38_v1_chr19_-_49057730_49057754	0.0388762	GLI3	ENST00000684222.1|CGB7|ENSG00000196337.13|chorionic gonadotropin subunit beta 7	ENST00000596965.5|CGB7|ENSG00000196337.13|chorionic gonadotropin subunit beta 7
hg38_v1_chr10_+_74176537_74176652	0.0387906	GLI3	ENST00000672394.1|ADK|ENSG00000156110.15|adenosine kinase
hg38_v1_chr2_+_119223815_119223871	0.0387469	GLI3	ENST00000393106.6|STEAP3|ENSG00000115107.20|STEAP3 metalloreductase	ENST00000393110.7|STEAP3|ENSG00000115107.20|STEAP3 metalloreductase	ENST00000409811.5|STEAP3|ENSG00000115107.20|STEAP3 metalloreductase	ENST00000393107.2|STEAP3|ENSG00000115107.20|STEAP3 metalloreductase
hg38_v1_chr7_-_100827504_100827531	0.0385096	GLI3	ENST00000616502.4|EPHB4|ENSG00000196411.10|EPH receptor B4	ENST00000358173.8|EPHB4|ENSG00000196411.10|EPH receptor B4
hg38_v1_chr3_-_126083922_126084169	0.0382316	GLI3	ENST00000514891.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000512470.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000504035.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000513723.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000510651.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000514333.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000360370.9|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3	ENST00000514677.5|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3
hg38_v1_chr20_+_45306834_45306851	0.038153	GLI3	ENST00000343694.8|RBPJL|ENSG00000124232.11|recombination signal binding protein for immunoglobulin kappa J region like	ENST00000372741.7|RBPJL|ENSG00000124232.11|recombination signal binding protein for immunoglobulin kappa J region like	ENST00000372743.5|RBPJL|ENSG00000124232.11|recombination signal binding protein for immunoglobulin kappa J region like
hg38_v1_chr19_+_34172492_34172568	0.038001	GLI3	ENST00000544216.8|LSM14A|ENSG00000257103.9|LSM14A mRNA processing body assembly factor	ENST00000540746.6|LSM14A|ENSG00000257103.9|LSM14A mRNA processing body assembly factor	ENST00000433627.9|LSM14A|ENSG00000257103.9|LSM14A mRNA processing body assembly factor
hg38_v1_chr19_+_11239602_11239626	0.0379995	GLI3	ENST00000252453.12|ANGPTL8|ENSG00000130173.13|angiopoietin like 8
hg38_v1_chr16_-_2268373_2268407	0.0379105	GLI3	ENST00000566458.5|RNPS1|ENSG00000205937.12|RNA binding protein with serine rich domain 1
hg38_v1_chr6_+_28141830_28141915	0.0377007	GLI3	ENST00000330236.7|ZKSCAN8|ENSG00000198315.11|zinc finger with KRAB and SCAN domains 8
hg38_v1_chr6_+_36948257_36948313	0.037485	GLI3	ENST00000647861.1|PI16|ENSG00000164530.15|peptidase inhibitor 16	ENST00000611814.4|PI16|ENSG00000164530.15|peptidase inhibitor 16
hg38_v1_chr19_+_41354145_41354180	0.0373206	GLI3	ENST00000604123.5|TMEM91|ENSG00000142046.15|transmembrane protein 91
hg38_v1_chrY_+_24833843_24833940	0.0372538	GLI3	ENST00000415508.6|DAZ4|ENSG00000205916.12|deleted in azoospermia 4	ENST00000382314.6|DAZ4|ENSG00000205916.12|deleted in azoospermia 4	ENST00000449750.7|DAZ4|ENSG00000205916.12|deleted in azoospermia 4	ENST00000682740.1|DAZ4|ENSG00000205916.12|deleted in azoospermia 4	ENST00000382432.9|DAZ4|ENSG00000205916.12|deleted in azoospermia 4	ENST00000440066.6|DAZ4|ENSG00000205916.12|deleted in azoospermia 4
hg38_v1_chr8_+_141416078_141416134	0.0370865	GLI3	ENST00000349124.3|PTP4A3|ENSG00000184489.13|protein tyrosine phosphatase 4A3
hg38_v1_chr19_+_47778585_47778682	0.0369315	GLI3	ENST00000509570.6|SELENOW|ENSG00000178980.15|selenoprotein W	ENST00000612212.4|SELENOW|ENSG00000178980.15|selenoprotein W	ENST00000593892.5|SELENOW|ENSG00000178980.15|selenoprotein W
hg38_v1_chr3_-_32570771_32570864	0.0369075	GLI3	ENST00000273130.9|DYNC1LI1|ENSG00000144635.9|dynein cytoplasmic 1 light intermediate chain 1	ENST00000432458.6|DYNC1LI1|ENSG00000144635.9|dynein cytoplasmic 1 light intermediate chain 1	ENST00000424991.1|DYNC1LI1|ENSG00000144635.9|dynein cytoplasmic 1 light intermediate chain 1
hg38_v1_chr10_-_101839818_101839878	0.0366823	GLI3	ENST00000348850.9|KCNIP2|ENSG00000120049.20|potassium voltage-gated channel interacting protein 2
hg38_v1_chr19_-_53824288_53824394	0.0366447	GLI3	ENST00000324134.11|NLRP12|ENSG00000142405.22|NLR family pyrin domain containing 12	ENST00000391773.6|NLRP12|ENSG00000142405.22|NLR family pyrin domain containing 12	ENST00000391775.7|NLRP12|ENSG00000142405.22|NLR family pyrin domain containing 12	ENST00000345770.9|NLRP12|ENSG00000142405.22|NLR family pyrin domain containing 12	ENST00000391772.1|NLRP12|ENSG00000142405.22|NLR family pyrin domain containing 12
hg38_v1_chr12_-_21774688_21774730	0.0365728	GLI3	ENST00000240662.3|KCNJ8|ENSG00000121361.5|potassium inwardly rectifying channel subfamily J member 8
hg38_v1_chr6_+_35737028_35737035	0.0365645	GLI3	ENST00000373869.7|ARMC12|ENSG00000157343.9|armadillo repeat containing 12	ENST00000373866.4|ARMC12|ENSG00000157343.9|armadillo repeat containing 12
hg38_v1_chr10_+_70672457_70672543	0.0364782	GLI3	ENST00000373207.2|ADAMTS14|ENSG00000138316.11|ADAM metallopeptidase with thrombospondin type 1 motif 14
hg38_v1_chr16_-_90008988_90009009	0.0363973	GLI3	ENST00000568662.2|DBNDD1|ENSG00000003249.15|dysbindin domain containing 1
hg38_v1_chr1_+_207321532_207321662	0.0358596	GLI3	ENST00000367063.6|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000391921.9|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)	ENST00000645323.1|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)
hg38_v1_chr5_+_73565734_73565780	0.0357486	GLI3	ENST00000543251.5|UTP15|ENSG00000164338.10|UTP15 small subunit processome component	ENST00000509005.5|UTP15|ENSG00000164338.10|UTP15 small subunit processome component	ENST00000296792.9|UTP15|ENSG00000164338.10|UTP15 small subunit processome component	ENST00000508686.1|UTP15|ENSG00000164338.10|UTP15 small subunit processome component	ENST00000508491.1|UTP15|ENSG00000164338.10|UTP15 small subunit processome component
hg38_v1_chr11_+_66052331_66052400	0.0356389	GLI3	ENST00000528302.5|SF3B2|ENSG00000087365.16|splicing factor 3b subunit 2	ENST00000322535.11|SF3B2|ENSG00000087365.16|splicing factor 3b subunit 2	ENST00000524627.5|SF3B2|ENSG00000087365.16|splicing factor 3b subunit 2	ENST00000533595.5|SF3B2|ENSG00000087365.16|splicing factor 3b subunit 2	ENST00000530322.5|SF3B2|ENSG00000087365.16|splicing factor 3b subunit 2
hg38_v1_chr1_-_36464262_36464430	0.0352846	GLI3	ENST00000373116.6|MRPS15|ENSG00000116898.12|mitochondrial ribosomal protein S15
hg38_v1_chr17_+_45161864_45161931	0.0352463	GLI3	ENST00000589230.6|HEXIM2|ENSG00000168517.11|HEXIM P-TEFb complex subunit 2	ENST00000591576.5|HEXIM2|ENSG00000168517.11|HEXIM P-TEFb complex subunit 2	ENST00000591070.6|HEXIM2|ENSG00000168517.11|HEXIM P-TEFb complex subunit 2	ENST00000592695.1|HEXIM2|ENSG00000168517.11|HEXIM P-TEFb complex subunit 2
hg38_v1_chr10_+_71319249_71319290	0.0350174	GLI3	ENST00000373189.6|SLC29A3|ENSG00000198246.9|solute carrier family 29 member 3	ENST00000479577.2|SLC29A3|ENSG00000198246.9|solute carrier family 29 member 3
hg38_v1_chr11_+_34916611_34916657	0.034868	GLI3	ENST00000227868.9|PDHX|ENSG00000110435.13|pyruvate dehydrogenase complex component X	ENST00000430469.6|PDHX|ENSG00000110435.13|pyruvate dehydrogenase complex component X	ENST00000533262.1|PDHX|ENSG00000110435.13|pyruvate dehydrogenase complex component X
hg38_v1_chr19_-_4454084_4454093	0.0346926	GLI3	ENST00000591919.5|UBXN6|ENSG00000167671.12|UBX domain protein 6
hg38_v1_chr6_+_24775413_24775482	0.0346861	GLI3	ENST00000378054.6|GMNN|ENSG00000112312.10|geminin DNA replication inhibitor	ENST00000620958.4|GMNN|ENSG00000112312.10|geminin DNA replication inhibitor	ENST00000476555.5|GMNN|ENSG00000112312.10|geminin DNA replication inhibitor
hg38_v1_chr6_-_89118002_89118087	0.034679	GLI3	ENST00000452027.3|SRSF12|ENSG00000154548.9|serine and arginine rich splicing factor 12
hg38_v1_chr16_-_88785210_88785227	0.0343099	GLI3	ENST00000301015.14|PIEZO1|ENSG00000103335.22|piezo type mechanosensitive ion channel component 1
hg38_v1_chrX_+_1615158_1615175	0.034194	GLI3	ENST00000381229.9|ASMT|ENSG00000196433.13|acetylserotonin O-methyltransferase	ENST00000381233.8|ASMT|ENSG00000196433.13|acetylserotonin O-methyltransferase
hg38_v1_chr5_+_81301570_81301629	0.0335618	GLI3	ENST00000407610.8|ZCCHC9|ENSG00000131732.12|zinc finger CCHC-type containing 9	ENST00000254037.6|ZCCHC9|ENSG00000131732.12|zinc finger CCHC-type containing 9	ENST00000380199.9|ZCCHC9|ENSG00000131732.12|zinc finger CCHC-type containing 9
hg38_v1_chr1_-_92483947_92483960	0.0335251	GLI3	ENST00000370332.5|GFI1|ENSG00000162676.12|growth factor independent 1 transcriptional repressor
hg38_v1_chr16_-_75207152_75207189	0.0335018	GLI3	ENST00000303037.13|CTRB2|ENSG00000168928.13|chymotrypsinogen B2
hg38_v1_chr7_+_99828010_99828116	0.0332155	GLI3	ENST00000631161.2|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000354829.7|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000342499.8|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000417625.5|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000415413.5|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000444905.5|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000222382.5|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43	ENST00000312017.9|CYP3A43|ENSG00000021461.17|cytochrome P450 family 3 subfamily A member 43
hg38_v1_chr5_-_44389407_44389434	0.0328346	GLI3	ENST00000264664.5|FGF10|ENSG00000070193.5|fibroblast growth factor 10
hg38_v1_chr1_+_227735421_227735472	0.0326735	GLI3	ENST00000681149.1|SNAP47|ENSG00000143740.15|synaptosome associated protein 47	ENST00000418653.6|SNAP47|ENSG00000143740.15|synaptosome associated protein 47	ENST00000478768.3|SNAP47|ENSG00000143740.15|synaptosome associated protein 47	ENST00000681929.1|SNAP47|ENSG00000143740.15|synaptosome associated protein 47	ENST00000617596.5|SNAP47|ENSG00000143740.15|synaptosome associated protein 47	ENST00000426344.6|SNAP47|ENSG00000143740.15|synaptosome associated protein 47
hg38_v1_chr1_+_179293760_179293851	0.0325754	GLI3	ENST00000367619.8|SOAT1|ENSG00000057252.13|sterol O-acyltransferase 1
hg38_v1_chr22_-_30529163_30529163	0.0325036	GLI3	ENST00000437871.1|SEC14L6|ENSG00000214491.8|SEC14 like lipid binding 6
hg38_v1_chr9_-_125189721_125189939	0.0323272	GLI3	ENST00000456642.1|PPP6C|ENSG00000119414.12|protein phosphatase 6 catalytic subunit	ENST00000373547.9|PPP6C|ENSG00000119414.12|protein phosphatase 6 catalytic subunit	ENST00000415905.5|PPP6C|ENSG00000119414.12|protein phosphatase 6 catalytic subunit	ENST00000451402.5|PPP6C|ENSG00000119414.12|protein phosphatase 6 catalytic subunit
hg38_v1_chr11_+_46381033_46381135	0.0322153	GLI3	ENST00000359803.7|MDK|ENSG00000110492.16|midkine
hg38_v1_chr13_+_105466216_105466289	0.0321772	GLI3	ENST00000375936.8|DAOA|ENSG00000182346.21|D-amino acid oxidase activator	ENST00000329625.9|DAOA|ENSG00000182346.21|D-amino acid oxidase activator	ENST00000595812.2|DAOA|ENSG00000182346.21|D-amino acid oxidase activator	ENST00000618629.1|DAOA|ENSG00000182346.21|D-amino acid oxidase activator
hg38_v1_chr1_-_231241121_231241197	0.0321468	GLI3	ENST00000318906.6|C1orf131|ENSG00000143633.13|chromosome 1 open reading frame 131	ENST00000366649.7|C1orf131|ENSG00000143633.13|chromosome 1 open reading frame 131	ENST00000366651.7|C1orf131|ENSG00000143633.13|chromosome 1 open reading frame 131
hg38_v1_chr18_+_13611910_13612029	0.0320157	GLI3	ENST00000590308.1|LDLRAD4|ENSG00000168675.19|low density lipoprotein receptor class A domain containing 4
hg38_v1_chr8_+_10525529_10525546	0.0319413	GLI3	ENST00000328655.8|PRSS55|ENSG00000184647.11|serine protease 55	ENST00000522210.1|PRSS55|ENSG00000184647.11|serine protease 55
hg38_v1_chr10_+_132332273_132332292	0.0318078	GLI3	ENST00000368613.8|LRRC27|ENSG00000148814.18|leucine rich repeat containing 27
hg38_v1_chr11_+_46381645_46381693	0.0316421	GLI3	ENST00000617138.4|MDK|ENSG00000110492.16|midkine	ENST00000395566.9|MDK|ENSG00000110492.16|midkine	ENST00000395569.8|MDK|ENSG00000110492.16|midkine
hg38_v1_chr11_-_30586866_30586877	0.0313847	GLI3	ENST00000528686.2|MPPED2|ENSG00000066382.17|metallophosphoesterase domain containing 2
hg38_v1_chr15_-_82699893_82699901	0.0312204	GLI3	ENST00000642989.2|AP3B2|ENSG00000103723.17|adaptor related protein complex 3 subunit beta 2
hg38_v1_chr20_+_43514492_43514534	0.0311897	GLI3	ENST00000373135.8|L3MBTL1|ENSG00000185513.17|L3MBTL histone methyl-lysine binding protein 1	ENST00000373134.5|L3MBTL1|ENSG00000185513.17|L3MBTL histone methyl-lysine binding protein 1
hg38_v1_chr15_+_73994694_73994776	0.0309501	GLI3	ENST00000268058.8|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000395132.6|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000268059.10|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000354026.10|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000565898.5|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000569477.5|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000569965.5|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000567543.5|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000436891.7|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000435786.6|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000564428.5|PML|ENSG00000140464.20|PML nuclear body scaffold	ENST00000359928.8|PML|ENSG00000140464.20|PML nuclear body scaffold
hg38_v1_chr4_+_87422564_87422648	0.0308248	GLI3	ENST00000302174.9|NUDT9|ENSG00000170502.13|nudix hydrolase 9	ENST00000512216.5|NUDT9|ENSG00000170502.13|nudix hydrolase 9	ENST00000473942.5|NUDT9|ENSG00000170502.13|nudix hydrolase 9
hg38_v1_chr1_-_39575686_39575913	0.0307275	GLI3	ENST00000677006.1|PABPC4|ENSG00000090621.15|poly(A) binding protein cytoplasmic 4	ENST00000678625.1|PABPC4|ENSG00000090621.15|poly(A) binding protein cytoplasmic 4	ENST00000677609.1|PABPC4|ENSG00000090621.15|poly(A) binding protein cytoplasmic 4
hg38_v1_chr11_+_1868673_1868724	0.0307107	GLI3	ENST00000405957.6|LSP1|ENSG00000130592.17|lymphocyte specific protein 1
hg38_v1_chr21_+_34668986_34669035	0.0307063	GLI3	ENST00000349499.3|CLIC6|ENSG00000159212.13|chloride intracellular channel 6
hg38_v1_chr17_+_7857695_7857759	0.0306393	GLI3	ENST00000571846.5|CYB5D1|ENSG00000182224.12|cytochrome b5 domain containing 1
hg38_v1_chr4_+_1289870_1289917	0.0305489	GLI3	ENST00000505177.6|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase	ENST00000503653.5|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase	ENST00000264750.10|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase	ENST00000303400.9|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase	ENST00000502558.5|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase	ENST00000514708.5|MAEA|ENSG00000090316.16|macrophage erythroblast attacher, E3 ubiquitin ligase
hg38_v1_chr2_+_9423640_9423703	0.0296623	GLI3	ENST00000475482.5|CPSF3|ENSG00000119203.14|cleavage and polyadenylation specific factor 3	ENST00000238112.8|CPSF3|ENSG00000119203.14|cleavage and polyadenylation specific factor 3
hg38_v1_chr19_+_17337539_17337602	0.0296617	GLI3	ENST00000324894.13|GTPBP3|ENSG00000130299.17|GTP binding protein 3, mitochondrial	ENST00000358792.11|GTPBP3|ENSG00000130299.17|GTP binding protein 3, mitochondrial	ENST00000600625.5|GTPBP3|ENSG00000130299.17|GTP binding protein 3, mitochondrial
hg38_v1_chr9_-_127877665_127877682	0.0296406	GLI3	ENST00000644144.2|AK1|ENSG00000106992.19|adenylate kinase 1
hg38_v1_chr2_+_219418369_219418386	0.0295795	GLI3	ENST00000373960.4|DES|ENSG00000175084.13|desmin
hg38_v1_chr1_+_202462730_202462744	0.0292506	GLI3	ENST00000290419.9|PPP1R12B|ENSG00000077157.22|protein phosphatase 1 regulatory subunit 12B	ENST00000491336.5|PPP1R12B|ENSG00000077157.22|protein phosphatase 1 regulatory subunit 12B
hg38_v1_chr16_-_20806431_20806493	0.029234	GLI3	ENST00000357967.9|ERI2|ENSG00000196678.14|ERI1 exoribonuclease family member 2	ENST00000300005.7|ERI2|ENSG00000196678.14|ERI1 exoribonuclease family member 2	ENST00000569729.5|ERI2|ENSG00000196678.14|ERI1 exoribonuclease family member 2
hg38_v1_chr16_+_67846917_67846950	0.029219	GLI3	ENST00000219169.9|NUTF2|ENSG00000102898.12|nuclear transport factor 2	ENST00000567105.5|NUTF2|ENSG00000102898.12|nuclear transport factor 2
hg38_v1_chr5_-_218136_218161	0.0291923	GLI3	ENST00000296824.4|CCDC127|ENSG00000164366.4|coiled-coil domain containing 127
hg38_v1_chr19_+_43596575_43596654	0.0282612	GLI3	ENST00000528387.5|ZNF576|ENSG00000124444.16|zinc finger protein 576	ENST00000529930.1|ZNF576|ENSG00000124444.16|zinc finger protein 576	ENST00000336564.5|ZNF576|ENSG00000124444.16|zinc finger protein 576	ENST00000607544.1|SRRM5|ENSG00000226763.5|serine/arginine repetitive matrix 5
hg38_v1_chr3_-_171809770_171809924	0.0282301	GLI3	ENST00000331659.2|PLD1|ENSG00000075651.16|phospholipase D1
hg38_v1_chr19_+_47778689_47778717	0.0281394	GLI3	ENST00000595615.1|SELENOW|ENSG00000178980.15|selenoprotein W	ENST00000601048.6|SELENOW|ENSG00000178980.15|selenoprotein W
hg38_v1_chr9_+_137255277_137255375	0.0280554	GLI3	ENST00000343053.6|NELFB|ENSG00000188986.9|negative elongation factor complex member B
hg38_v1_chrX_+_1615049_1615072	0.0278664	GLI3	ENST00000381241.9|ASMT|ENSG00000196433.13|acetylserotonin O-methyltransferase
hg38_v1_chr16_-_71289609_71289728	0.0276883	GLI3	ENST00000338099.9|CMTR2|ENSG00000180917.18|cap methyltransferase 2	ENST00000563876.1|CMTR2|ENSG00000180917.18|cap methyltransferase 2
hg38_v1_chr2_-_95121788_95121828	0.0275694	GLI3	ENST00000272418.7|MRPS5|ENSG00000144029.12|mitochondrial ribosomal protein S5
hg38_v1_chr1_+_201982613_201982667	0.0274356	GLI3	ENST00000295640.9|RNPEP|ENSG00000176393.11|arginyl aminopeptidase	ENST00000367286.7|RNPEP|ENSG00000176393.11|arginyl aminopeptidase
hg38_v1_chr5_+_6633421_6633465	0.0273183	GLI3	ENST00000274192.7|SRD5A1|ENSG00000145545.12|steroid 5 alpha-reductase 1
hg38_v1_chr6_+_28259285_28259349	0.0272886	GLI3	ENST00000343684.4|NKAPL|ENSG00000189134.4|NFKB activating protein like
hg38_v1_chr9_+_133356536_133356599	0.0272872	GLI3	ENST00000371964.5|SURF2|ENSG00000148291.10|surfeit 2
hg38_v1_chr6_+_27388748_27388777	0.0272531	GLI3	ENST00000244576.9|ZNF391|ENSG00000124613.9|zinc finger protein 391
hg38_v1_chr5_-_178232537_178232630	0.0268493	GLI3	ENST00000476170.2|PHYKPL|ENSG00000175309.15|5-phosphohydroxy-L-lysine phospho-lyase	ENST00000323594.8|PHYKPL|ENSG00000175309.15|5-phosphohydroxy-L-lysine phospho-lyase
hg38_v1_chr10_-_46030585_46030633	0.0268437	GLI3	ENST00000580070.5|NCOA4|ENSG00000266412.6|nuclear receptor coactivator 4	ENST00000578454.5|NCOA4|ENSG00000266412.6|nuclear receptor coactivator 4	ENST00000585056.5|NCOA4|ENSG00000266412.6|nuclear receptor coactivator 4	ENST00000579039.2|NCOA4|ENSG00000266412.6|nuclear receptor coactivator 4	ENST00000581486.6|NCOA4|ENSG00000266412.6|nuclear receptor coactivator 4
hg38_v1_chr10_-_70283998_70284011	0.0266605	GLI3	ENST00000277942.7|NPFFR1|ENSG00000148734.8|neuropeptide FF receptor 1
hg38_v1_chrX_+_11758159_11758268	0.0265043	GLI3	ENST00000361672.6|MSL3|ENSG00000005302.19|MSL complex subunit 3	ENST00000337339.7|MSL3|ENSG00000005302.19|MSL complex subunit 3	ENST00000647869.1|MSL3|ENSG00000005302.19|MSL complex subunit 3	ENST00000312196.10|MSL3|ENSG00000005302.19|MSL complex subunit 3	ENST00000647857.1|MSL3|ENSG00000005302.19|MSL complex subunit 3	ENST00000649130.1|MSL3|ENSG00000005302.19|MSL complex subunit 3
hg38_v1_chr21_+_43169008_43169008	0.0264622	GLI3	ENST00000291554.6|CRYAA|ENSG00000160202.7|crystallin alpha A
hg38_v1_chr17_-_43942472_43942476	0.0263695	GLI3	ENST00000225992.8|PPY|ENSG00000108849.8|pancreatic polypeptide
hg38_v1_chr22_+_36863091_36863114	0.0258969	GLI3	ENST00000650698.1|NCF4|ENSG00000100365.16|neutrophil cytosolic factor 4
hg38_v1_chr3_-_170181719_170181756	0.0256813	GLI3	ENST00000484931.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000495893.7|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000494943.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000497658.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000475729.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000481639.1|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000467570.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3	ENST00000466189.5|PHC3|ENSG00000173889.16|polyhomeotic homolog 3
hg38_v1_chr18_+_3451647_3451724	0.0255491	GLI3	ENST00000345133.9|TGIF1|ENSG00000177426.22|TGFB induced factor homeobox 1	ENST00000330513.10|TGIF1|ENSG00000177426.22|TGFB induced factor homeobox 1	ENST00000549546.5|TGIF1|ENSG00000177426.22|TGFB induced factor homeobox 1
hg38_v1_chr12_-_6493295_6493306	0.0255366	GLI3	ENST00000540949.1|MRPL51|ENSG00000111639.8|mitochondrial ribosomal protein L51
hg38_v1_chr16_+_28846674_28846706	0.0251196	GLI3	ENST00000322610.12|SH2B1|ENSG00000178188.15|SH2B adaptor protein 1
hg38_v1_chr2_+_216499068_216499140	0.024819	GLI3	ENST00000456586.5|RPL37A|ENSG00000197756.10|ribosomal protein L37a	ENST00000427280.6|RPL37A|ENSG00000197756.10|ribosomal protein L37a	ENST00000598925.5|RPL37A|ENSG00000197756.10|ribosomal protein L37a	ENST00000441179.2|RPL37A|ENSG00000197756.10|ribosomal protein L37a
hg38_v1_chr20_-_23988779_23988779	0.024733	GLI3	ENST00000335694.4|GGTLC1|ENSG00000149435.12|gamma-glutamyltransferase light chain 1
hg38_v1_chr18_+_3448456_3448499	0.0246962	GLI3	ENST00000549780.5|TGIF1|ENSG00000177426.22|TGFB induced factor homeobox 1
hg38_v1_chr14_+_95535008_95535074	0.0246545	GLI3	ENST00000331334.5|GLRX5|ENSG00000182512.5|glutaredoxin 5
hg38_v1_chr17_+_74748616_74748637	0.0245526	GLI3	ENST00000262613.10|SLC9A3R1|ENSG00000109062.12|SLC9A3 regulator 1
hg38_v1_chr9_+_130200375_130200432	0.0243762	GLI3	ENST00000630865.1|NCS1|ENSG00000107130.10|neuronal calcium sensor 1
hg38_v1_chr3_+_37452121_37452160	0.0243204	GLI3	ENST00000264741.10|ITGA9|ENSG00000144668.12|integrin subunit alpha 9
hg38_v1_chr12_+_27022543_27022584	0.0243197	GLI3	ENST00000546323.5|MED21|ENSG00000152944.9|mediator complex subunit 21	ENST00000282892.4|MED21|ENSG00000152944.9|mediator complex subunit 21
hg38_v1_chr16_+_55656249_55656276	0.0238985	GLI3	ENST00000219833.13|SLC6A2|ENSG00000103546.19|solute carrier family 6 member 2	ENST00000574918.2|SLC6A2|ENSG00000103546.19|solute carrier family 6 member 2
hg38_v1_chr7_-_56051288_56051471	0.0238392	GLI3	ENST00000419984.6|PSPH|ENSG00000146733.14|phosphoserine phosphatase	ENST00000413218.5|PSPH|ENSG00000146733.14|phosphoserine phosphatase	ENST00000275605.8|PSPH|ENSG00000146733.14|phosphoserine phosphatase	ENST00000424596.1|PSPH|ENSG00000146733.14|phosphoserine phosphatase	ENST00000421312.5|PSPH|ENSG00000146733.14|phosphoserine phosphatase	ENST00000416592.1|PSPH|ENSG00000146733.14|phosphoserine phosphatase
hg38_v1_chr16_-_88686453_88686513	0.0237663	GLI3	ENST00000332281.6|SNAI3|ENSG00000185669.6|snail family transcriptional repressor 3
hg38_v1_chr2_+_26562539_26562609	0.0236193	GLI3	ENST00000409392.5|FAM166C|ENSG00000173557.15|family with sequence similarity 166 member C	ENST00000329615.4|FAM166C|ENSG00000173557.15|family with sequence similarity 166 member C
hg38_v1_chr20_-_35292415_35292431	0.0235174	GLI3	ENST00000374408.4|FAM83C|ENSG00000125998.8|family with sequence similarity 83 member C
hg38_v1_chr19_-_4581755_4581790	0.0234337	GLI3	ENST00000676793.1|SEMA6B|ENSG00000167680.17|semaphorin 6B
hg38_v1_chr3_+_140941792_140941887	0.0231317	GLI3	ENST00000446041.6|SLC25A36|ENSG00000114120.14|solute carrier family 25 member 36	ENST00000324194.12|SLC25A36|ENSG00000114120.14|solute carrier family 25 member 36	ENST00000507429.5|SLC25A36|ENSG00000114120.14|solute carrier family 25 member 36
hg38_v1_chr15_-_65286837_65286917	0.0231231	GLI3	ENST00000444347.2|PARP16|ENSG00000138617.16|poly(ADP-ribose) polymerase family member 16	ENST00000261888.10|PARP16|ENSG00000138617.16|poly(ADP-ribose) polymerase family member 16	ENST00000649807.2|PARP16|ENSG00000138617.16|poly(ADP-ribose) polymerase family member 16
hg38_v1_chr3_+_154121366_154121463	0.0229051	GLI3	ENST00000465093.6|ARHGEF26|ENSG00000114790.13|Rho guanine nucleotide exchange factor 26	ENST00000496710.5|ARHGEF26|ENSG00000114790.13|Rho guanine nucleotide exchange factor 26	ENST00000465817.1|ARHGEF26|ENSG00000114790.13|Rho guanine nucleotide exchange factor 26
hg38_v1_chr12_-_54188871_54188996	0.022751	GLI3	ENST00000504338.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000514685.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000504797.1|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000513838.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000505128.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000337581.7|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000503306.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000243112.9|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000514196.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000682136.1|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000506169.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000507904.5|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1	ENST00000508394.6|SMUG1|ENSG00000123415.16|single-strand-selective monofunctional uracil-DNA glycosylase 1
hg38_v1_chr5_-_67196791_67196808	0.0225972	GLI3	ENST00000256447.5|CD180|ENSG00000134061.5|CD180 molecule
hg38_v1_chr14_+_73591873_73591873	0.0225726	GLI3	ENST00000326303.5|ACOT4|ENSG00000177465.5|acyl-CoA thioesterase 4
hg38_v1_chr12_-_122266410_122266424	0.022485	GLI3	ENST00000451053.3|VPS33A|ENSG00000139719.11|VPS33A core subunit of CORVET and HOPS complexes
hg38_v1_chr22_+_31093358_31093385	0.0221058	GLI3	ENST00000404574.5|SMTN|ENSG00000183963.19|smoothelin
hg38_v1_chr17_-_28897602_28897691	0.0221027	GLI3	ENST00000394906.6|FLOT2|ENSG00000132589.16|flotillin 2	ENST00000585169.5|FLOT2|ENSG00000132589.16|flotillin 2
hg38_v1_chr16_-_5066024_5066110	0.0220469	GLI3	ENST00000315997.5|C16orf89|ENSG00000153446.16|chromosome 16 open reading frame 89
hg38_v1_chr11_+_65181920_65181983	0.0219338	GLI3	ENST00000279247.11|CAPN1|ENSG00000014216.16|calpain 1	ENST00000532285.1|CAPN1|ENSG00000014216.16|calpain 1	ENST00000534373.5|CAPN1|ENSG00000014216.16|calpain 1
hg38_v1_chr7_+_76201863_76201918	0.0219255	GLI3	ENST00000611745.2|SRRM3|ENSG00000177679.16|serine/arginine repetitive matrix 3
hg38_v1_chr17_-_28370283_28370313	0.0216916	GLI3	ENST00000226218.9|VTN|ENSG00000109072.14|vitronectin
hg38_v1_chr9_-_133356448_133356495	0.0216873	GLI3	ENST00000615505.4|SURF1|ENSG00000148290.10|SURF1 cytochrome c oxidase assembly factor	ENST00000371974.8|SURF1|ENSG00000148290.10|SURF1 cytochrome c oxidase assembly factor
hg38_v1_chr1_-_204152010_204152051	0.0216079	GLI3	ENST00000367202.9|ETNK2|ENSG00000143845.15|ethanolamine kinase 2
hg38_v1_chr9_-_120714457_120714531	0.0213298	GLI3	ENST00000373930.4|MEGF9|ENSG00000106780.9|multiple EGF like domains 9
hg38_v1_chr19_-_47886308_47886349	0.0212769	GLI3	ENST00000222002.4|SULT2A1|ENSG00000105398.4|sulfotransferase family 2A member 1
hg38_v1_chr14_+_21965451_21965472	0.0212175	GLI3	ENST00000390442.3|TRAV12-3|ENSG00000211794.3|T cell receptor alpha variable 12-3
hg38_v1_chr1_+_161226045_161226075	0.0212027	GLI3	ENST00000367988.8|TOMM40L|ENSG00000158882.15|translocase of outer mitochondrial membrane 40 like
hg38_v1_chr3_-_25783381_25783424	0.0211377	GLI3	ENST00000308710.9|NGLY1|ENSG00000151092.18|N-glycanase 1	ENST00000676225.1|NGLY1|ENSG00000151092.18|N-glycanase 1
hg38_v1_chr16_+_70114306_70114372	0.0210628	GLI3	ENST00000288050.9|PDPR|ENSG00000090857.14|pyruvate dehydrogenase phosphatase regulatory subunit	ENST00000398122.7|PDPR|ENSG00000090857.14|pyruvate dehydrogenase phosphatase regulatory subunit	ENST00000568530.5|PDPR|ENSG00000090857.14|pyruvate dehydrogenase phosphatase regulatory subunit
hg38_v1_chr8_-_118621901_118621984	0.02098	GLI3	ENST00000409003.5|SAMD12|ENSG00000177570.15|sterile alpha motif domain containing 12	ENST00000524796.6|SAMD12|ENSG00000177570.15|sterile alpha motif domain containing 12	ENST00000314727.9|SAMD12|ENSG00000177570.15|sterile alpha motif domain containing 12
hg38_v1_chr20_+_3209469_3209528	0.0209109	GLI3	ENST00000380113.8|ITPA|ENSG00000125877.13|inosine triphosphatase	ENST00000455664.6|ITPA|ENSG00000125877.13|inosine triphosphatase	ENST00000399838.3|ITPA|ENSG00000125877.13|inosine triphosphatase
hg38_v1_chr8_+_97644164_97644200	0.0208345	GLI3	ENST00000336273.8|MTDH|ENSG00000147649.10|metadherin
hg38_v1_chr11_+_64285839_64285916	0.0206476	GLI3	ENST00000438980.7|GPR137|ENSG00000173264.15|G protein-coupled receptor 137	ENST00000540370.1|GPR137|ENSG00000173264.15|G protein-coupled receptor 137
hg38_v1_chr22_+_22409755_22409771	0.0205766	GLI3	ENST00000390299.2|IGLV1-40|ENSG00000211653.2|immunoglobulin lambda variable 1-40
hg38_v1_chr19_+_10871516_10871596	0.0203279	GLI3	ENST00000327064.9|CARM1|ENSG00000142453.12|coactivator associated arginine methyltransferase 1	ENST00000588947.5|CARM1|ENSG00000142453.12|coactivator associated arginine methyltransferase 1
hg38_v1_chr21_+_45848160_45848168	0.0202708	GLI3	ENST00000400310.5|PCBP3|ENSG00000183570.17|poly(rC) binding protein 3
hg38_v1_chr17_+_75646235_75646265	0.0200509	GLI3	ENST00000556126.2|SMIM6|ENSG00000259120.3|small integral membrane protein 6	ENST00000579469.2|SMIM6|ENSG00000259120.3|small integral membrane protein 6
hg38_v1_chr13_-_113449128_113449277	0.0200022	GLI3	ENST00000356501.8|ADPRHL1|ENSG00000153531.14|ADP-ribosylhydrolase like 1	ENST00000413169.2|ADPRHL1|ENSG00000153531.14|ADP-ribosylhydrolase like 1
hg38_v1_chr19_-_40390175_40390186	0.0199304	GLI3	ENST00000291823.3|HIPK4|ENSG00000160396.9|homeodomain interacting protein kinase 4
hg38_v1_chr20_+_64084995_64085016	0.0199106	GLI3	ENST00000349451.3|OPRL1|ENSG00000125510.18|opioid related nociceptin receptor 1
hg38_v1_chr19_+_48993525_48993616	0.01988	GLI3	ENST00000601968.5|RUVBL2|ENSG00000183207.14|RuvB like AAA ATPase 2	ENST00000596837.5|RUVBL2|ENSG00000183207.14|RuvB like AAA ATPase 2
hg38_v1_chr2_+_233729042_233729042	0.0196968	GLI3	ENST00000482026.6|UGT1A3|ENSG00000288702.1|UDP glucuronosyltransferase family 1 member A3
hg38_v1_chr15_-_70763430_70763452	0.0191686	GLI3	ENST00000539319.5|UACA|ENSG00000137831.15|uveal autoantigen with coiled-coil domains and ankyrin repeats
hg38_v1_chr3_-_122993232_122993273	0.0191584	GLI3	ENST00000650207.1|SEMA5B|ENSG00000082684.16|semaphorin 5B	ENST00000616742.4|SEMA5B|ENSG00000082684.16|semaphorin 5B	ENST00000393583.6|SEMA5B|ENSG00000082684.16|semaphorin 5B
hg38_v1_chr2_+_112721486_112721486	0.0189048	GLI3	ENST00000327581.4|NT5DC4|ENSG00000144130.11|5'-nucleotidase domain containing 4
hg38_v1_chr9_+_100427123_100427173	0.0188145	GLI3	ENST00000395067.7|MSANTD3|ENSG00000066697.15|Myb/SANT DNA binding domain containing 3
hg38_v1_chr16_-_75265925_75266022	0.018602	GLI3	ENST00000535626.6|BCAR1|ENSG00000050820.17|BCAR1 scaffold protein, Cas family member	ENST00000538440.6|BCAR1|ENSG00000050820.17|BCAR1 scaffold protein, Cas family member	ENST00000418647.7|BCAR1|ENSG00000050820.17|BCAR1 scaffold protein, Cas family member
hg38_v1_chr18_+_3451585_3451608	0.0185737	GLI3	ENST00000551541.5|TGIF1|ENSG00000177426.22|TGFB induced factor homeobox 1
hg38_v1_chr11_+_61766073_61766117	0.0184597	GLI3	ENST00000675319.1|MYRF|ENSG00000124920.14|myelin regulatory factor
hg38_v1_chr1_+_228165794_228165815	0.0180508	GLI3	ENST00000366711.4|IBA57|ENSG00000181873.13|iron-sulfur cluster assembly factor IBA57
hg38_v1_chr11_+_49027501_49027501	0.0177861	GLI3	ENST00000622138.4|TRIM49B|ENSG00000182053.13|tripartite motif containing 49B
hg38_v1_chr5_-_141680822_141680872	0.0175394	GLI3	ENST00000504448.1|ARAP3|ENSG00000120318.16|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
hg38_v1_chr11_-_111913195_111913347	0.0174357	GLI3	ENST00000531198.5|CRYAB|ENSG00000109846.9|crystallin alpha B	ENST00000616970.5|CRYAB|ENSG00000109846.9|crystallin alpha B	ENST00000527899.6|CRYAB|ENSG00000109846.9|crystallin alpha B
hg38_v1_chr22_+_39021113_39021129	0.017428	GLI3	ENST00000427494.6|APOBEC3D|ENSG00000243811.12|apolipoprotein B mRNA editing enzyme catalytic subunit 3D	ENST00000216099.13|APOBEC3D|ENSG00000243811.12|apolipoprotein B mRNA editing enzyme catalytic subunit 3D
hg38_v1_chr10_-_70376779_70376794	0.0172362	GLI3	ENST00000395011.5|LRRC20|ENSG00000172731.15|leucine rich repeat containing 20
hg38_v1_chr1_+_150257764_150257781	0.0171487	GLI3	ENST00000369111.9|CA14|ENSG00000118298.12|carbonic anhydrase 14
hg38_v1_chr3_-_155293665_155293691	0.017112	GLI3	ENST00000489090.2|STRIT1|ENSG00000240045.2|small transmembrane regulator of ion transport 1
hg38_v1_chr1_+_247507058_247507126	0.0170787	GLI3	ENST00000527084.5|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like	ENST00000536561.5|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like	ENST00000527541.5|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like	ENST00000366491.6|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like	ENST00000366489.5|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like	ENST00000526896.5|GCSAML|ENSG00000169224.13|germinal center associated signaling and motility like
hg38_v1_chrX_-_154479253_154479291	0.0168058	GLI3	ENST00000357360.4|LAGE3|ENSG00000196976.7|L antigen family member 3
hg38_v1_chr22_-_24005409_24005457	0.0166903	GLI3	ENST00000621179.5|GSTT4|ENSG00000276950.5|glutathione S-transferase theta 4
hg38_v1_chr11_+_18455822_18455868	0.0166726	GLI3	ENST00000615355.4|LDHAL6A|ENSG00000166800.10|lactate dehydrogenase A like 6A	ENST00000396213.7|LDHAL6A|ENSG00000166800.10|lactate dehydrogenase A like 6A	ENST00000280706.3|LDHAL6A|ENSG00000166800.10|lactate dehydrogenase A like 6A
hg38_v1_chr14_-_106639589_106639657	0.0164493	GLI3	ENST00000390630.3|IGHV4-61|ENSG00000211970.3|immunoglobulin heavy variable 4-61
hg38_v1_chr16_-_28491996_28492088	0.0163618	GLI3	ENST00000568497.6|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000357857.14|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000395653.9|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000635973.1|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000568443.2|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000568558.6|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000565688.5|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000637100.1|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000359984.12|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000636147.2|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin	ENST00000567963.6|CLN3|ENSG00000188603.22|CLN3 lysosomal/endosomal transmembrane protein, battenin
hg38_v1_chr19_+_43596388_43596437	0.0161371	GLI3	ENST00000391965.6|ZNF576|ENSG00000124444.16|zinc finger protein 576	ENST00000525771.1|ZNF576|ENSG00000124444.16|zinc finger protein 576
hg38_v1_chr13_+_77697679_77697699	0.0158607	GLI3	ENST00000418532.6|SLAIN1|ENSG00000139737.22|SLAIN motif family member 1
hg38_v1_chr1_+_202010575_202010593	0.0157004	GLI3	ENST00000367283.7|ELF3|ENSG00000163435.16|E74 like ETS transcription factor 3	ENST00000367284.10|ELF3|ENSG00000163435.16|E74 like ETS transcription factor 3
hg38_v1_chr1_-_17045219_17045261	0.0156902	GLI3	ENST00000491274.5|SDHB|ENSG00000117118.10|succinate dehydrogenase complex iron sulfur subunit B
hg38_v1_chr12_-_7751605_7751622	0.0154601	GLI3	ENST00000354629.9|CLEC4C|ENSG00000198178.11|C-type lectin domain family 4 member C
hg38_v1_chr14_+_103100144_103100144	0.0153984	GLI3	ENST00000380069.7|EXOC3L4|ENSG00000205436.7|exocyst complex component 3 like 4
hg38_v1_chr1_+_19596960_19597059	0.0153755	GLI3	ENST00000617872.4|MICOS10|ENSG00000173436.15|mitochondrial contact site and cristae organizing system subunit 10	ENST00000322753.7|MICOS10|ENSG00000173436.15|mitochondrial contact site and cristae organizing system subunit 10	ENST00000602662.1|NBL1|ENSG00000158747.15|NBL1, DAN family BMP antagonist
hg38_v1_chr6_+_46652914_46652923	0.0151148	GLI3	ENST00000411689.6|SLC25A27|ENSG00000153291.16|solute carrier family 25 member 27
hg38_v1_chr2_+_233636445_233636454	0.0150476	GLI3	ENST00000344644.9|UGT1A10|ENSG00000242515.5|UDP glucuronosyltransferase family 1 member A10
hg38_v1_chr5_+_74685225_74685239	0.0149927	GLI3	ENST00000261416.12|HEXB|ENSG00000049860.14|hexosaminidase subunit beta
hg38_v1_chr17_+_42017020_42017094	0.0149923	GLI3	ENST00000307641.9|NKIRAS2|ENSG00000168256.18|NFKB inhibitor interacting Ras like 2
hg38_v1_chr15_+_88621290_88621370	0.014967	GLI3	ENST00000332810.4|AEN|ENSG00000181026.15|apoptosis enhancing nuclease	ENST00000559528.1|AEN|ENSG00000181026.15|apoptosis enhancing nuclease
hg38_v1_chr10_+_49679637_49679688	0.0149471	GLI3	ENST00000374113.3|C10orf53|ENSG00000178645.13|chromosome 10 open reading frame 53	ENST00000374111.8|C10orf53|ENSG00000178645.13|chromosome 10 open reading frame 53	ENST00000374112.7|C10orf53|ENSG00000178645.13|chromosome 10 open reading frame 53	ENST00000535836.1|C10orf53|ENSG00000178645.13|chromosome 10 open reading frame 53
hg38_v1_chr20_+_833705_833732	0.0147194	GLI3	ENST00000381941.8|FAM110A|ENSG00000125898.13|family with sequence similarity 110 member A
hg38_v1_chrX_+_2828921_2828965	0.0144168	GLI3	ENST00000398806.8|GYG2|ENSG00000056998.20|glycogenin 2
hg38_v1_chr10_-_70888546_70888616	0.0143528	GLI3	ENST00000299299.4|PCBD1|ENSG00000166228.9|pterin-4 alpha-carbinolamine dehydratase 1
hg38_v1_chr5_+_170232912_170232991	0.0140612	GLI3	ENST00000524171.5|C5orf58|ENSG00000234511.10|chromosome 5 open reading frame 58	ENST00000517575.4|C5orf58|ENSG00000234511.10|chromosome 5 open reading frame 58	ENST00000518395.2|C5orf58|ENSG00000234511.10|chromosome 5 open reading frame 58	ENST00000593851.5|C5orf58|ENSG00000234511.10|chromosome 5 open reading frame 58
hg38_v1_chr2_-_200864643_200864669	0.0139953	GLI3	ENST00000321356.9|CLK1|ENSG00000013441.16|CDC like kinase 1
hg38_v1_chr1_+_15476099_15476106	0.0139857	GLI3	ENST00000375910.8|CELA2B|ENSG00000215704.10|chymotrypsin like elastase 2B
hg38_v1_chr14_-_20587962_20588047	0.0139355	GLI3	ENST00000557105.5|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000398008.6|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000620912.4|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000555841.5|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000443456.6|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000432835.6|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000557503.5|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000398009.6|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)	ENST00000554842.1|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)
hg38_v1_chr1_+_150982268_150982329	0.0139106	GLI3	ENST00000368947.9|ANXA9|ENSG00000143412.10|annexin A9
hg38_v1_chr17_+_732560_732616	0.0136672	GLI3	ENST00000301324.8|TLCD3A|ENSG00000167695.15|TLC domain containing 3A	ENST00000308278.13|TLCD3A|ENSG00000167695.15|TLC domain containing 3A
hg38_v1_chr4_-_76148382_76148410	0.0135127	GLI3	ENST00000264883.8|NUP54|ENSG00000138750.15|nucleoporin 54	ENST00000514987.5|NUP54|ENSG00000138750.15|nucleoporin 54	ENST00000514901.5|NUP54|ENSG00000138750.15|nucleoporin 54
hg38_v1_chr14_-_91510144_91510317	0.0134734	GLI3	ENST00000554684.5|PPP4R3A|ENSG00000100796.18|protein phosphatase 4 regulatory subunit 3A	ENST00000554511.1|PPP4R3A|ENSG00000100796.18|protein phosphatase 4 regulatory subunit 3A	ENST00000554943.6|PPP4R3A|ENSG00000100796.18|protein phosphatase 4 regulatory subunit 3A
hg38_v1_chr2_+_264869_264906	0.0134682	GLI3	ENST00000272067.10|ACP1|ENSG00000143727.16|acid phosphatase 1	ENST00000407983.7|ACP1|ENSG00000143727.16|acid phosphatase 1
hg38_v1_chr4_-_95549199_95549222	0.0133272	GLI3	ENST00000504962.1|UNC5C|ENSG00000182168.15|unc-5 netrin receptor C	ENST00000506749.5|UNC5C|ENSG00000182168.15|unc-5 netrin receptor C
hg38_v1_chr6_-_53348902_53348974	0.0132674	GLI3	ENST00000370913.5|ELOVL5|ENSG00000012660.14|ELOVL fatty acid elongase 5	ENST00000304434.11|ELOVL5|ENSG00000012660.14|ELOVL fatty acid elongase 5
hg38_v1_chr1_+_16921923_16921940	0.01319	GLI3	ENST00000375541.10|CROCC|ENSG00000058453.17|ciliary rootlet coiled-coil, rootletin
hg38_v1_chr17_-_41812586_41812630	0.0128331	GLI3	ENST00000355468.7|P3H4|ENSG00000141696.13|prolyl 3-hydroxylase family member 4 (inactive)	ENST00000590496.1|P3H4|ENSG00000141696.13|prolyl 3-hydroxylase family member 4 (inactive)
hg38_v1_chr14_+_20955484_20955506	0.0124867	GLI3	ENST00000304625.3|RNASE2|ENSG00000169385.3|ribonuclease A family member 2
hg38_v1_chr9_+_87882871_87882878	0.0124351	GLI3	ENST00000325643.6|SPATA31E1|ENSG00000177992.10|SPATA31 subfamily E member 1
hg38_v1_chrX_-_149631682_149631756	0.0122235	GLI3	ENST00000511776.1|TMEM185A|ENSG00000269556.8|transmembrane protein 185A	ENST00000507237.5|TMEM185A|ENSG00000269556.8|transmembrane protein 185A
hg38_v1_chr9_+_137230757_137230933	0.0122042	GLI3	ENST00000673865.1|SLC34A3|ENSG00000198569.10|solute carrier family 34 member 3	ENST00000538474.5|SLC34A3|ENSG00000198569.10|solute carrier family 34 member 3	ENST00000673835.1|SLC34A3|ENSG00000198569.10|solute carrier family 34 member 3	ENST00000673953.1|SLC34A3|ENSG00000198569.10|solute carrier family 34 member 3	ENST00000361134.2|SLC34A3|ENSG00000198569.10|solute carrier family 34 member 3
hg38_v1_chr19_+_7507082_7507082	0.0121786	GLI3	ENST00000599312.1|ENSG00000267952.1|ENSG00000267952.1|novel transcript
hg38_v1_chr11_+_60971777_60971866	0.0120678	GLI3	ENST00000542157.5|CD6|ENSG00000013725.14|CD6 molecule	ENST00000433107.6|CD6|ENSG00000013725.14|CD6 molecule	ENST00000352009.9|CD6|ENSG00000013725.14|CD6 molecule	ENST00000452451.6|CD6|ENSG00000013725.14|CD6 molecule
hg38_v1_chr14_-_106791226_106791234	0.0120676	GLI3	ENST00000433072.2|IGHV3-72|ENSG00000225698.4|immunoglobulin heavy variable 3-72
hg38_v1_chr2_+_241558716_241558766	0.0116625	GLI3	ENST00000318407.5|BOK|ENSG00000176720.6|BCL2 family apoptosis regulator BOK
hg38_v1_chr8_+_1973668_1973727	0.0114178	GLI3	ENST00000320248.4|KBTBD11|ENSG00000176595.4|kelch repeat and BTB domain containing 11
hg38_v1_chr1_+_161225939_161226005	0.0111003	GLI3	ENST00000545897.5|TOMM40L|ENSG00000158882.15|translocase of outer mitochondrial membrane 40 like
hg38_v1_chr14_-_24634266_24634277	0.0110926	GLI3	ENST00000382540.5|GZMB|ENSG00000100453.13|granzyme B
hg38_v1_chr14_+_104707253_104707312	0.0104056	GLI3	ENST00000674602.1|INF2|ENSG00000203485.14|inverted formin 2
hg38_v1_chr3_-_25783434_25783498	0.0103958	GLI3	ENST00000396649.7|NGLY1|ENSG00000151092.18|N-glycanase 1	ENST00000280700.10|NGLY1|ENSG00000151092.18|N-glycanase 1	ENST00000428257.5|NGLY1|ENSG00000151092.18|N-glycanase 1
hg38_v1_chr9_+_35042213_35042252	0.0102887	GLI3	ENST00000378745.3|C9orf131|ENSG00000174038.13|chromosome 9 open reading frame 131	ENST00000312292.6|C9orf131|ENSG00000174038.13|chromosome 9 open reading frame 131
hg38_v1_chr17_+_47253817_47253853	0.0101271	GLI3	ENST00000559488.7|ITGB3|ENSG00000259207.9|integrin subunit beta 3	ENST00000571680.1|ITGB3|ENSG00000259207.9|integrin subunit beta 3
hg38_v1_chr1_+_18631513_18631529	0.0100955	GLI3	ENST00000400661.3|PAX7|ENSG00000009709.12|paired box 7
hg38_v1_chr2_+_79025696_79025707	0.0100346	GLI3	ENST00000272324.10|REG3G|ENSG00000143954.13|regenerating family member 3 gamma
hg38_v1_chr11_-_111913134_111913188	0.0099632	GLI3	ENST00000533971.2|CRYAB|ENSG00000109846.9|crystallin alpha B	ENST00000526180.6|CRYAB|ENSG00000109846.9|crystallin alpha B
hg38_v1_chr22_+_17563485_17563503	0.00960211	GLI3	ENST00000327451.11|SLC25A18|ENSG00000182902.14|solute carrier family 25 member 18
hg38_v1_chr6_-_26032091_26032109	0.00944612	GLI3	ENST00000621411.3|H3C2|ENSG00000286522.2|H3 clustered histone 2
hg38_v1_chr3_-_52834901_52834915	0.00936364	GLI3	ENST00000486659.5|MUSTN1|ENSG00000272573.6|musculoskeletal, embryonic nuclear protein 1
hg38_v1_chr11_-_36289408_36289449	0.00927781	GLI3	ENST00000263401.10|COMMD9|ENSG00000110442.12|COMM domain containing 9	ENST00000532705.1|COMMD9|ENSG00000110442.12|COMM domain containing 9	ENST00000452374.6|COMMD9|ENSG00000110442.12|COMM domain containing 9
hg38_v1_chr8_+_93916882_93917007	0.00919309	GLI3	ENST00000297598.5|PDP1|ENSG00000164951.16|pyruvate dehyrogenase phosphatase catalytic subunit 1	ENST00000520728.5|PDP1|ENSG00000164951.16|pyruvate dehyrogenase phosphatase catalytic subunit 1	ENST00000518107.5|PDP1|ENSG00000164951.16|pyruvate dehyrogenase phosphatase catalytic subunit 1	ENST00000396200.3|PDP1|ENSG00000164951.16|pyruvate dehyrogenase phosphatase catalytic subunit 1
hg38_v1_chr12_-_8949628_8949761	0.00918907	GLI3	ENST00000000412.8|M6PR|ENSG00000003056.8|mannose-6-phosphate receptor, cation dependent	ENST00000543845.1|M6PR|ENSG00000003056.8|mannose-6-phosphate receptor, cation dependent	ENST00000544245.1|M6PR|ENSG00000003056.8|mannose-6-phosphate receptor, cation dependent	ENST00000536844.5|M6PR|ENSG00000003056.8|mannose-6-phosphate receptor, cation dependent
hg38_v1_chr21_-_39183398_39183463	0.00912165	GLI3	ENST00000331573.8|PSMG1|ENSG00000183527.12|proteasome assembly chaperone 1
hg38_v1_chr22_-_38097772_38097788	0.00911012	GLI3	ENST00000332536.10|BAIAP2L2|ENSG00000128298.18|BAR/IMD domain containing adaptor protein 2 like 2
hg38_v1_chr11_+_90134634_90134738	0.0090898	GLI3	ENST00000534061.6|NAALAD2|ENSG00000077616.11|N-acetylated alpha-linked acidic dipeptidase 2	ENST00000321955.8|NAALAD2|ENSG00000077616.11|N-acetylated alpha-linked acidic dipeptidase 2	ENST00000525171.5|NAALAD2|ENSG00000077616.11|N-acetylated alpha-linked acidic dipeptidase 2	ENST00000375944.7|NAALAD2|ENSG00000077616.11|N-acetylated alpha-linked acidic dipeptidase 2
hg38_v1_chrX_+_155216452_155216483	0.00864146	GLI3	ENST00000286428.7|VBP1|ENSG00000155959.12|VHL binding protein 1
hg38_v1_chr14_-_24634160_24634209	0.00856842	GLI3	ENST00000616551.1|GZMB|ENSG00000100453.13|granzyme B	ENST00000382542.5|GZMB|ENSG00000100453.13|granzyme B	ENST00000216341.9|GZMB|ENSG00000100453.13|granzyme B	ENST00000526004.1|GZMB|ENSG00000100453.13|granzyme B	ENST00000415355.7|GZMB|ENSG00000100453.13|granzyme B
hg38_v1_chr10_+_92691897_92692032	0.00852543	GLI3	ENST00000492654.3|HHEX|ENSG00000152804.11|hematopoietically expressed homeobox
hg38_v1_chr11_-_119057218_119057229	0.0083788	GLI3	ENST00000652093.1|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1
hg38_v1_chr9_-_119369416_119369468	0.00787137	GLI3	ENST00000373964.2|BRINP1|ENSG00000078725.13|BMP/retinoic acid inducible neural specific 1	ENST00000265922.8|BRINP1|ENSG00000078725.13|BMP/retinoic acid inducible neural specific 1
hg38_v1_chr22_+_39014282_39014363	0.00782091	GLI3	ENST00000381568.9|ENSG00000284554.2|ENSG00000284554.2|novel protein
hg38_v1_chr2_-_74421560_74421654	0.00741676	GLI3	ENST00000612891.4|C2orf81|ENSG00000284308.2|chromosome 2 open reading frame 81	ENST00000640331.1|C2orf81|ENSG00000284308.2|chromosome 2 open reading frame 81	ENST00000684111.1|C2orf81|ENSG00000284308.2|chromosome 2 open reading frame 81
hg38_v1_chr17_+_76726948_76726965	0.00738966	GLI3	ENST00000586200.1|METTL23|ENSG00000181038.14|methyltransferase like 23
hg38_v1_chr19_-_40285395_40285536	0.00724774	GLI3	ENST00000424901.5|AKT2|ENSG00000105221.18|AKT serine/threonine kinase 2	ENST00000578123.5|AKT2|ENSG00000105221.18|AKT serine/threonine kinase 2
hg38_v1_chr13_-_100588731_100588795	0.00722169	GLI3	ENST00000471912.1|GGACT|ENSG00000134864.11|gamma-glutamylamine cyclotransferase	ENST00000683975.1|GGACT|ENSG00000134864.11|gamma-glutamylamine cyclotransferase
hg38_v1_chr11_-_119057185_119057211	0.00718855	GLI3	ENST00000614668.4|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000617285.5|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1
hg38_v1_chr5_-_163460067_163460128	0.00703238	GLI3	ENST00000302764.9|NUDCD2|ENSG00000170584.11|NudC domain containing 2
hg38_v1_chr12_-_21775045_21775056	0.00699995	GLI3	ENST00000667884.1|KCNJ8|ENSG00000121361.5|potassium inwardly rectifying channel subfamily J member 8
hg38_v1_chr17_+_67377413_67377461	0.00698857	GLI3	ENST00000580974.5|PITPNC1|ENSG00000154217.15|phosphatidylinositol transfer protein cytoplasmic 1
hg38_v1_chr5_+_126631680_126631726	0.00678333	GLI3	ENST00000357147.4|TEX43|ENSG00000196900.5|testis expressed 43
hg38_v1_chr17_+_44142015_44142060	0.0067044	GLI3	ENST00000245382.6|HROB|ENSG00000125319.15|homologous recombination factor with OB-fold
hg38_v1_chr9_-_34381531_34381576	0.0062033	GLI3	ENST00000379124.5|C9orf24|ENSG00000164972.13|chromosome 9 open reading frame 24	ENST00000379126.7|C9orf24|ENSG00000164972.13|chromosome 9 open reading frame 24	ENST00000379127.1|C9orf24|ENSG00000164972.13|chromosome 9 open reading frame 24
hg38_v1_chr1_-_1375490_1375542	0.00605629	GLI3	ENST00000338338.9|AURKAIP1|ENSG00000175756.13|aurora kinase A interacting protein 1
hg38_v1_chr22_-_29838227_29838308	0.0058935	GLI3	ENST00000307790.8|ASCC2|ENSG00000100325.15|activating signal cointegrator 1 complex subunit 2	ENST00000397771.6|ASCC2|ENSG00000100325.15|activating signal cointegrator 1 complex subunit 2	ENST00000542393.5|ASCC2|ENSG00000100325.15|activating signal cointegrator 1 complex subunit 2
hg38_v1_chr14_-_91510450_91510527	0.00578599	GLI3	ENST00000555462.5|PPP4R3A|ENSG00000100796.18|protein phosphatase 4 regulatory subunit 3A
hg38_v1_chr11_-_119057105_119057157	0.00577748	GLI3	ENST00000534233.5|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000614711.4|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000530467.5|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000621959.4|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000532519.6|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000532421.5|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000610597.1|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1	ENST00000612687.4|HYOU1|ENSG00000149428.19|hypoxia up-regulated 1
hg38_v1_chr20_+_45469745_45469761	0.00567269	GLI3	ENST00000372676.8|WFDC2|ENSG00000101443.18|WAP four-disulfide core domain 2	ENST00000217425.9|WFDC2|ENSG00000101443.18|WAP four-disulfide core domain 2	ENST00000339946.7|WFDC2|ENSG00000101443.18|WAP four-disulfide core domain 2
hg38_v1_chr16_+_165966_165985	0.0054927	GLI3	ENST00000356815.4|HBM|ENSG00000206177.7|hemoglobin subunit mu
hg38_v1_chr5_-_163460048_163460060	0.00537924	GLI3	ENST00000517501.1|NUDCD2|ENSG00000170584.11|NudC domain containing 2
hg38_v1_chr17_-_50373173_50373207	0.00537586	GLI3	ENST00000225969.9|MRPL27|ENSG00000108826.16|mitochondrial ribosomal protein L27	ENST00000503633.5|MRPL27|ENSG00000108826.16|mitochondrial ribosomal protein L27	ENST00000442592.3|MRPL27|ENSG00000108826.16|mitochondrial ribosomal protein L27
hg38_v1_chr1_+_150257247_150257267	0.00537059	GLI3	ENST00000647854.1|CA14|ENSG00000118298.12|carbonic anhydrase 14
hg38_v1_chr5_+_7396099_7396254	0.00531118	GLI3	ENST00000338316.9|ADCY2|ENSG00000078295.17|adenylate cyclase 2
hg38_v1_chr1_+_91949343_91949385	0.00528324	GLI3	ENST00000448194.6|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000470955.6|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000362005.7|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000370389.6|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000394530.7|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000423434.5|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000440509.5|BRDT|ENSG00000137948.19|bromodomain testis associated	ENST00000426141.6|BRDT|ENSG00000137948.19|bromodomain testis associated
hg38_v1_chr2_-_68467272_68467302	0.00512335	GLI3	ENST00000377957.4|FBXO48|ENSG00000204923.4|F-box protein 48
hg38_v1_chr16_-_88977196_88977217	0.00503513	GLI3	ENST00000268679.9|CBFA2T3|ENSG00000129993.15|CBFA2/RUNX1 partner transcriptional co-repressor 3
hg38_v1_chr19_-_10102659_10102685	0.0047405	GLI3	ENST00000592641.5|ANGPTL6|ENSG00000130812.11|angiopoietin like 6	ENST00000253109.5|ANGPTL6|ENSG00000130812.11|angiopoietin like 6
hg38_v1_chr12_-_92929236_92929336	0.00455818	GLI3	ENST00000322349.13|EEA1|ENSG00000102189.17|early endosome antigen 1
hg38_v1_chr1_-_225924228_225924340	0.00446603	GLI3	ENST00000343818.11|PYCR2|ENSG00000143811.19|pyrroline-5-carboxylate reductase 2	ENST00000432920.2|ENSG00000255835.1|ENSG00000255835.1|novel protein	ENST00000612039.4|PYCR2|ENSG00000143811.19|pyrroline-5-carboxylate reductase 2
hg38_v1_chr16_-_71884113_71884204	0.00421728	GLI3	ENST00000568666.5|ZNF821|ENSG00000102984.15|zinc finger protein 821	ENST00000562797.5|ZNF821|ENSG00000102984.15|zinc finger protein 821	ENST00000425432.6|ZNF821|ENSG00000102984.15|zinc finger protein 821	ENST00000313565.10|ZNF821|ENSG00000102984.15|zinc finger protein 821	ENST00000611294.4|ZNF821|ENSG00000102984.15|zinc finger protein 821	ENST00000564134.5|ZNF821|ENSG00000102984.15|zinc finger protein 821
hg38_v1_chr17_-_39401593_39401706	0.00421119	GLI3	ENST00000394294.7|FBXL20|ENSG00000108306.13|F-box and leucine rich repeat protein 20	ENST00000264658.11|FBXL20|ENSG00000108306.13|F-box and leucine rich repeat protein 20	ENST00000583610.5|FBXL20|ENSG00000108306.13|F-box and leucine rich repeat protein 20	ENST00000647139.1|FBXL20|ENSG00000108306.13|F-box and leucine rich repeat protein 20
hg38_v1_chr3_-_126056786_126056838	0.00418189	GLI3	ENST00000383598.6|SLC41A3|ENSG00000114544.17|solute carrier family 41 member 3
hg38_v1_chr1_-_47231715_47231786	0.00412874	GLI3	ENST00000371884.6|TAL1|ENSG00000162367.11|TAL bHLH transcription factor 1, erythroid differentiation factor
hg38_v1_chr16_+_19113955_19114059	0.00411649	GLI3	ENST00000381440.5|ITPRIPL2|ENSG00000205730.7|ITPRIP like 2	ENST00000564808.6|ENSG00000261427.6|ENSG00000261427.6|novel transcript	ENST00000568526.1|ENSG00000261427.6|ENSG00000261427.6|novel transcript
hg38_v1_chr9_+_21440437_21440439	0.00409546	GLI3	ENST00000276927.3|IFNA1|ENSG00000197919.6|interferon alpha 1
hg38_v1_chr16_+_50548387_50548405	0.00400748	GLI3	ENST00000268459.6|NKD1|ENSG00000140807.7|NKD inhibitor of WNT signaling pathway 1
hg38_v1_chr21_-_36060466_36060533	0.00386466	GLI3	ENST00000399212.5|SETD4|ENSG00000185917.14|SET domain containing 4	ENST00000332131.9|SETD4|ENSG00000185917.14|SET domain containing 4	ENST00000446166.5|SETD4|ENSG00000185917.14|SET domain containing 4
hg38_v1_chr17_-_6651427_6651482	0.00363034	GLI3	ENST00000574128.1|MED31|ENSG00000108590.11|mediator complex subunit 31
hg38_v1_chr11_+_66258467_66258545	0.00346272	GLI3	ENST00000394066.6|KLC2|ENSG00000174996.12|kinesin light chain 2
hg38_v1_chr9_-_128127711_128127759	0.00339928	GLI3	ENST00000449878.1|PTGES2|ENSG00000148334.16|prostaglandin E synthase 2	ENST00000338961.11|PTGES2|ENSG00000148334.16|prostaglandin E synthase 2	ENST00000678174.1|PTGES2|ENSG00000148334.16|prostaglandin E synthase 2
hg38_v1_chr2_+_79025678_79025689	0.00318865	GLI3	ENST00000393897.6|REG3G|ENSG00000143954.13|regenerating family member 3 gamma
hg38_v1_chr3_-_187291882_187291987	0.00315709	GLI3	ENST00000392470.6|MASP1|ENSG00000127241.18|mannan binding lectin serine peptidase 1	ENST00000169293.10|MASP1|ENSG00000127241.18|mannan binding lectin serine peptidase 1	ENST00000439271.1|MASP1|ENSG00000127241.18|mannan binding lectin serine peptidase 1	ENST00000392472.6|MASP1|ENSG00000127241.18|mannan binding lectin serine peptidase 1	ENST00000392475.2|MASP1|ENSG00000127241.18|mannan binding lectin serine peptidase 1
hg38_v1_chrX_-_2500895_2500983	0.00312091	GLI3	ENST00000461691.6|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000381222.8|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000381223.9|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000412516.7|DHRSX|ENSG00000169084.15|dehydrogenase/reductase X-linked	ENST00000334651.11|DHRSX|ENSG00000169084.15|dehydrogenase/reductase X-linked	ENST00000652001.1|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1
hg38_v1_chr17_-_4786433_4786450	0.00305482	GLI3	ENST00000354194.4|VMO1|ENSG00000182853.12|vitelline membrane outer layer 1 homolog
hg38_v1_chr3_-_138132381_138132394	0.00293761	GLI3	ENST00000236709.4|A4GNT|ENSG00000118017.4|alpha-1,4-N-acetylglucosaminyltransferase
hg38_v1_chr11_+_18172837_18172837	0.00280282	GLI3	ENST00000314254.3|MRGPRX4|ENSG00000179817.5|MAS related GPR family member X4
hg38_v1_chr1_-_2412509_2412579	0.00279733	GLI3	ENST00000507596.5|PEX10|ENSG00000157911.11|peroxisomal biogenesis factor 10	ENST00000288774.8|PEX10|ENSG00000157911.11|peroxisomal biogenesis factor 10	ENST00000447513.7|PEX10|ENSG00000157911.11|peroxisomal biogenesis factor 10
hg38_v1_chr8_-_144852991_144853082	0.00237178	GLI3	ENST00000533270.1|COMMD5|ENSG00000170619.10|COMM domain containing 5	ENST00000305103.4|COMMD5|ENSG00000170619.10|COMM domain containing 5	ENST00000402718.4|COMMD5|ENSG00000170619.10|COMM domain containing 5	ENST00000543949.2|COMMD5|ENSG00000170619.10|COMM domain containing 5
hg38_v1_chr3_+_141763408_141763408	0.00226268	GLI3	ENST00000682958.1|GRK7|ENSG00000114124.3|G protein-coupled receptor kinase 7
hg38_v1_chr12_+_6868093_6868153	0.00212828	GLI3	ENST00000488464.6|TPI1|ENSG00000111669.15|triosephosphate isomerase 1	ENST00000535434.5|TPI1|ENSG00000111669.15|triosephosphate isomerase 1	ENST00000493987.5|TPI1|ENSG00000111669.15|triosephosphate isomerase 1
hg38_v1_chr19_+_7534004_7534204	0.00197866	GLI3	ENST00000221249.10|PNPLA6|ENSG00000032444.17|patatin like phospholipase domain containing 6	ENST00000601668.5|PNPLA6|ENSG00000032444.17|patatin like phospholipase domain containing 6	ENST00000601001.5|PNPLA6|ENSG00000032444.17|patatin like phospholipase domain containing 6
hg38_v1_chr14_-_20587716_20587731	0.00190383	GLI3	ENST00000553849.1|RNASE11|ENSG00000173464.14|ribonuclease A family member 11 (inactive)
hg38_v1_chr19_+_43716070_43716088	0.00132972	GLI3	ENST00000244314.6|IRGC|ENSG00000124449.7|immunity related GTPase cinema
hg38_v1_chrY_-_2500895_2500976	0.00118229	GLI3	ENST00000461691.6_PAR_Y|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000381222.8_PAR_Y|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000381223.9_PAR_Y|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1	ENST00000412516.7_PAR_Y|DHRSX|ENSG00000169084.15|dehydrogenase/reductase X-linked	ENST00000334651.11_PAR_Y|DHRSX|ENSG00000169084.15|dehydrogenase/reductase X-linked	ENST00000652001.1_PAR_Y|ZBED1|ENSG00000214717.12|zinc finger BED-type containing 1
hg38_v1_chr15_+_49170200_49170233	0.00102203	GLI3	ENST00000396509.6|GALK2|ENSG00000156958.15|galactokinase 2
hg38_v1_chr17_-_352784_352842	0.00101199	GLI3	ENST00000577079.5|RPH3AL|ENSG00000181031.16|rabphilin 3A like (without C2 domains)	ENST00000331302.12|RPH3AL|ENSG00000181031.16|rabphilin 3A like (without C2 domains)	ENST00000618002.4|RPH3AL|ENSG00000181031.16|rabphilin 3A like (without C2 domains)	ENST00000536489.6|RPH3AL|ENSG00000181031.16|rabphilin 3A like (without C2 domains)
hg38_v1_chr5_-_59276109_59276124	0.000983746	GLI3	ENST00000503258.5|PDE4D|ENSG00000113448.19|phosphodiesterase 4D
hg38_v1_chr19_+_41350911_41350966	0.000710087	GLI3	ENST00000539627.5|TMEM91|ENSG00000142046.15|transmembrane protein 91
hg38_v1_chr22_-_50526130_50526185	0.000411078	GLI3	ENST00000535425.5|SCO2|ENSG00000284194.3|synthesis of cytochrome C oxidase 2	ENST00000638598.2|SCO2|ENSG00000284194.3|synthesis of cytochrome C oxidase 2
hg38_v1_chr18_-_46657214_46657233	0.000133606	GLI3	ENST00000642948.1|LOXHD1|ENSG00000167210.17|lipoxygenase homology domains 1
hg38_v1_chr15_+_74788542_74788549	6.31444e-05	GLI3	ENST00000567571.5|CSK|ENSG00000103653.17|C-terminal Src kinase
