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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G01250
Z-value: 1.02
Transcription factors associated with AT1G01250
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G01250
|
AT1G01250 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G01250 | arTal_v1_Chr1_-_105330_105330 | 0.46 | 1.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18744322_18744322 Show fit | 7.08 |
AT2G45470.1
|
FASCICLIN-like arabinogalactan protein 8 |
|
| arTal_v1_Chr4_-_7493080_7493080 Show fit | 6.29 |
AT4G12730.1
|
FASCICLIN-like arabinogalactan 2 |
|
| arTal_v1_Chr3_-_4744263_4744263 Show fit | 5.55 |
AT3G14240.1
|
Subtilase family protein |
|
| arTal_v1_Chr1_-_4530222_4530222 Show fit | 5.41 |
AT1G13250.1
|
galacturonosyltransferase-like 3 |
|
| arTal_v1_Chr2_-_15474717_15474828 Show fit | 5.34 |
AT2G36870.2
AT2G36870.1 |
xyloglucan endotransglucosylase/hydrolase 32 |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 5.32 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 5.24 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 5.14 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr5_-_8916856_8916856 Show fit | 5.13 |
AT5G25610.1
|
BURP domain-containing protein |
|
| arTal_v1_Chr2_-_9428170_9428170 Show fit | 5.04 |
AT2G22170.1
|
Lipase/lipooxygenase, PLAT/LH2 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G01250
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 13.0 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.1 | 8.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.2 | 7.8 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 5.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 5.6 | GO:0009969 | xyloglucan biosynthetic process(GO:0009969) |
| 0.1 | 5.6 | GO:0016485 | protein processing(GO:0016485) |
| 0.3 | 5.2 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.2 | 5.1 | GO:0009269 | response to desiccation(GO:0009269) |
| 1.2 | 4.9 | GO:0080094 | response to trehalose-6-phosphate(GO:0080094) |
| 1.2 | 4.8 | GO:0046498 | S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 29.0 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 27.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 12.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 12.7 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 7.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 6.4 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 6.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.4 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 4.7 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 4.6 | GO:0055028 | cortical microtubule(GO:0055028) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 8.5 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.3 | 8.2 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.3 | 7.8 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.2 | 5.9 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 0.2 | 5.6 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.2 | 5.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.3 | 5.2 | GO:0016759 | cellulose synthase activity(GO:0016759) |
| 0.6 | 5.0 | GO:0004096 | catalase activity(GO:0004096) |
| 1.0 | 4.9 | GO:0004001 | adenosine kinase activity(GO:0004001) |
| 0.0 | 4.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.2 | 1.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.3 | 0.9 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.9 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 1.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.5 | 1.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |