ISMARA results: AT1G09530

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G09530_AT5G61380

Z-value: 1.05

Transcription factors associated with AT1G09530_AT5G61380

Gene Symbol	Gene ID	Gene Info
AT1G09530 TAIR	AT1G09530	phytochrome interacting factor 3
AT5G61380 TAIR	AT5G61380	CCT motif -containing response regulator protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
TOC1	arTal_v1_Chr5_+_24674963_24674963	0.92	6.0e-12	Click!
PIF3	arTal_v1_Chr1_+_3076401_3076401	0.89	3.1e-10	Click!

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_+_579744_579852 Show fit	7.28	AT5G02580.1 AT5G02580.3 AT5G02580.2	AT5G02580 TAIR Show fit	argininosuccinate lyase
arTal_v1_Chr1_-_28318362_28318375 Show fit	6.20	AT1G75450.1 AT1G75450.2	CKX5 TAIR Show fit	cytokinin oxidase 5
arTal_v1_Chr4_-_16942060_16942060 Show fit	5.85	AT4G35750.1	AT4G35750 TAIR Show fit	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr1_+_26038905_26038905 Show fit	5.68	AT1G69260.1	AFP1 TAIR Show fit	ABI five binding protein
arTal_v1_Chr3_-_6804114_6804114 Show fit	4.97	AT3G19580.2	ZF2 TAIR Show fit	zinc-finger protein 2
arTal_v1_Chr3_-_6804296_6804296 Show fit	4.87	AT3G19580.1	ZF2 TAIR Show fit	zinc-finger protein 2
arTal_v1_Chr1_-_467873_467880 Show fit	4.76	AT1G02340.2 AT1G02340.1	HFR1 TAIR Show fit	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
arTal_v1_Chr2_-_761013_761064 Show fit	4.50	AT2G02710.2 AT2G02710.3 AT2G02710.4 AT2G02710.1	PLPB TAIR Show fit	PAS/LOV protein B
arTal_v1_Chr1_+_29099839_29099839 Show fit	4.29	AT1G77450.1	NAC032 TAIR Show fit	NAC domain containing protein 32
arTal_v1_Chr5_-_23501416_23501416 Show fit	3.80	AT5G58070.1	TIL TAIR Show fit	temperature-induced lipocalin

Showing 1 to 10 of 46 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	9.8	GO:0042538	hyperosmotic salinity response(GO:0042538)
0.0	6.6	GO:0006470	protein dephosphorylation(GO:0006470)
1.0	6.2	GO:0042447	cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0	5.7	GO:0009738	abscisic acid-activated signaling pathway(GO:0009738)
0.2	4.8	GO:0009785	blue light signaling pathway(GO:0009785) intracellular receptor signaling pathway(GO:0030522)
0.3	4.3	GO:1900057	positive regulation of leaf senescence(GO:1900057)
0.1	4.0	GO:0006012	galactose metabolic process(GO:0006012)
1.3	3.8	GO:0006883	cellular sodium ion homeostasis(GO:0006883) chloride ion homeostasis(GO:0055064)
0.3	3.7	GO:0002221	pattern recognition receptor signaling pathway(GO:0002221)
0.5	3.6	GO:0045487	diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)

Showing 1 to 10 of 22 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.8	GO:0009898	cytoplasmic side of plasma membrane(GO:0009898)
0.0	3.6	GO:0046658	anchored component of plasma membrane(GO:0046658)
0.2	2.9	GO:0005779	integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.3	2.5	GO:0010445	nuclear dicing body(GO:0010445)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	17.4	GO:0003690	double-stranded DNA binding(GO:0003690)
0.1	6.6	GO:0004722	protein serine/threonine phosphatase activity(GO:0004722)
0.9	6.2	GO:0019139	cytokinin dehydrogenase activity(GO:0019139)
0.0	4.8	GO:0000989	transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.1	4.1	GO:0004712	protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.4	4.0	GO:0047216	inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.2	3.7	GO:0004568	chitinase activity(GO:0004568)
1.2	3.6	GO:0052635	C-20 gibberellin 2-beta-dioxygenase activity(GO:0052635)
0.2	3.6	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.1	2.9	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)

Showing 1 to 10 of 16 entries

Results for AT1G09530_AT5G61380

Z-value: 1.05

Transcription factors associated with AT1G09530_AT5G61380

Activity-expression correlation:

Activity profile of AT1G09530_AT5G61380 motif

Sorted Z-values of AT1G09530_AT5G61380 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G09530_AT5G61380

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: