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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G15780
Z-value: 0.26
Transcription factors associated with AT1G15780
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G15780
|
AT1G15780 | mediator of RNA polymerase II transcription subunit 15a-like protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NRB4 | arTal_v1_Chr1_-_5436352_5436352 | -0.93 | 1.1e-12 | Click! |
Activity profile of AT1G15780 motif
Sorted Z-values of AT1G15780 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_18776735_18776839 | 1.02 |
AT5G46290.2
AT5G46290.3 AT5G46290.1 |
KASI
|
3-ketoacyl-acyl carrier protein synthase I |
| arTal_v1_Chr5_+_5038563_5038563 | 0.80 |
AT5G15530.1
|
BCCP2
|
biotin carboxyl carrier protein 2 |
| arTal_v1_Chr3_-_3863250_3863250 | 0.62 |
AT3G12120.1
|
FAD2
|
fatty acid desaturase 2 |
| arTal_v1_Chr3_-_3862498_3862498 | 0.60 |
AT3G12120.2
|
FAD2
|
fatty acid desaturase 2 |
| arTal_v1_Chr1_+_23192146_23192146 | 0.51 |
AT1G62640.2
AT1G62640.1 |
KAS III
|
3-ketoacyl-acyl carrier protein synthase III |
| arTal_v1_Chr3_+_20114684_20114684 | 0.50 |
AT3G54320.1
|
WRI1
|
Integrase-type DNA-binding superfamily protein |
| arTal_v1_Chr5_+_21463467_21463467 | 0.48 |
AT5G52920.1
|
PKP-BETA1
|
plastidic pyruvate kinase beta subunit 1 |
| arTal_v1_Chr3_+_20115212_20115307 | 0.47 |
AT3G54320.5
AT3G54320.2 |
WRI1
|
Integrase-type DNA-binding superfamily protein |
| arTal_v1_Chr3_+_20114488_20114488 | 0.43 |
AT3G54320.4
AT3G54320.3 |
WRI1
|
Integrase-type DNA-binding superfamily protein |
| arTal_v1_Chr5_-_19947588_19947588 | 0.08 |
AT5G49190.1
|
SUS2
|
sucrose synthase 2 |
| arTal_v1_Chr5_-_19947013_19947101 | 0.08 |
AT5G49190.3
AT5G49190.2 |
SUS2
|
sucrose synthase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G15780
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.4 | GO:0043471 | regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471) |
| 0.0 | 1.2 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.0 | 1.0 | GO:0010020 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.0 | 0.2 | GO:0000244 | spliceosomal tri-snRNP complex assembly(GO:0000244) |
| 0.0 | 1.8 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.8 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.0 | 0.2 | GO:0005682 | U5 snRNP(GO:0005682) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.2 | GO:0045485 | omega-6 fatty acid desaturase activity(GO:0045485) |
| 0.3 | 0.8 | GO:0009374 | biotin binding(GO:0009374) |
| 0.0 | 0.2 | GO:0030620 | U2 snRNA binding(GO:0030620) pre-mRNA intronic binding(GO:0097157) |
| 0.0 | 0.5 | GO:0004312 | fatty acid synthase activity(GO:0004312) |
| 0.0 | 0.5 | GO:0004743 | pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420) |
| 0.0 | 1.4 | GO:0019900 | kinase binding(GO:0019900) |