ISMARA results: AT1G28470

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G28470

Z-value: 1.80

Transcription factors associated with AT1G28470

Gene Symbol	Gene ID	Gene Info
AT1G28470 TAIR	AT1G28470	NAC domain containing protein 10

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
NAC010	arTal_v1_Chr1_+_10010124_10010124	0.45	1.7e-02	Click!

Activity profile of AT1G28470 motif

Sorted Z-values of AT1G28470 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr3_+_15983199_15983199 Show fit	6.59	AT3G44300.1	NIT2 TAIR Show fit	nitrilase 2
arTal_v1_Chr3_-_6258426_6258426 Show fit	5.81	AT3G18250.1	AT3G18250 TAIR Show fit	Putative membrane lipoprotein
arTal_v1_Chr4_+_8392825_8392825 Show fit	5.65	AT4G14630.1	GLP9 TAIR Show fit	germin-like protein 9
arTal_v1_Chr1_-_9131779_9131779 Show fit	5.40	AT1G26390.1	AT1G26390 TAIR Show fit	FAD-binding Berberine family protein
arTal_v1_Chr3_-_20769324_20769410 Show fit	5.33	AT3G55970.2 AT3G55970.1	JRG21 TAIR Show fit	jasmonate-regulated gene 21
arTal_v1_Chr3_-_21189859_21189967 Show fit	5.32	AT3G57260.1 AT3G57260.2	BGL2 TAIR Show fit	beta-1,3-glucanase 2
arTal_v1_Chr3_-_8007836_8007836 Show fit	5.27	AT3G22600.1	AT3G22600 TAIR Show fit	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
arTal_v1_Chr2_+_7845923_7845999 Show fit	5.16	AT2G18050.2 AT2G18050.1	HIS1-3 TAIR Show fit	histone H1-3
arTal_v1_Chr4_-_9201643_9201643 Show fit	5.13	AT4G16260.2 AT4G16260.1	AT4G16260 TAIR Show fit	Glycosyl hydrolase superfamily protein
arTal_v1_Chr4_+_8908763_8908879 Show fit	5.12	AT4G15610.1 AT4G15610.2	AT4G15610 TAIR Show fit	Uncharacterized protein family (UPF0497)

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	72.6	GO:0071456	cellular response to hypoxia(GO:0071456)
0.3	31.7	GO:0007568	aging(GO:0007568)
0.3	25.2	GO:0009751	response to salicylic acid(GO:0009751)
0.6	22.7	GO:0043562	cellular response to nitrogen levels(GO:0043562)
0.1	22.5	GO:0016567	protein ubiquitination(GO:0016567)
0.4	19.9	GO:0072666	protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666)
0.3	16.8	GO:0009626	plant-type hypersensitive response(GO:0009626)
0.4	16.6	GO:2000022	regulation of jasmonic acid mediated signaling pathway(GO:2000022)
1.3	16.5	GO:1900057	positive regulation of leaf senescence(GO:1900057)
0.4	15.5	GO:0002239	response to oomycetes(GO:0002239)

Showing 1 to 10 of 543 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	45.0	GO:0005886	plasma membrane(GO:0005886)
0.1	29.3	GO:0005774	vacuolar membrane(GO:0005774)
0.2	24.6	GO:0000325	plant-type vacuole(GO:0000325)
0.1	17.8	GO:0098791	Golgi subcompartment(GO:0098791)
0.1	16.4	GO:0000785	chromatin(GO:0000785)
0.2	15.4	GO:0019005	SCF ubiquitin ligase complex(GO:0019005)
0.0	15.4	GO:0005773	vacuole(GO:0005773)
0.2	14.3	GO:0005635	nuclear envelope(GO:0005635)
0.0	13.9	GO:0005783	endoplasmic reticulum(GO:0005783)
0.1	13.5	GO:0033646	host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)

Showing 1 to 10 of 184 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	67.3	GO:0004842	ubiquitin-protein transferase activity(GO:0004842)
0.1	45.5	GO:0004674	protein serine/threonine kinase activity(GO:0004674)
0.0	33.3	GO:0043565	sequence-specific DNA binding(GO:0043565)
0.2	31.2	GO:0005516	calmodulin binding(GO:0005516)
0.2	28.6	GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.2	21.5	GO:0046982	protein heterodimerization activity(GO:0046982)
0.3	16.7	GO:0061631	ubiquitin conjugating enzyme activity(GO:0061631)
0.1	16.4	GO:0020037	heme binding(GO:0020037)
0.1	15.7	GO:0004722	protein serine/threonine phosphatase activity(GO:0004722)
0.4	15.2	GO:0004364	glutathione transferase activity(GO:0004364)

Showing 1 to 10 of 422 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	4.7	PID ERBB1 DOWNSTREAM PATHWAY	ErbB1 downstream signaling
0.5	3.8	PID MTOR 4PATHWAY	mTOR signaling pathway
0.5	2.7	PID CIRCADIAN PATHWAY	Circadian rhythm pathway
0.4	2.6	PID PLK1 PATHWAY	PLK1 signaling events
0.7	2.2	SIG CHEMOTAXIS	Genes related to chemotaxis
0.3	1.6	PID S1P META PATHWAY	Sphingosine 1-phosphate (S1P) pathway
0.2	1.2	NABA ECM GLYCOPROTEINS	Genes encoding structural ECM glycoproteins
0.3	1.0	PID TAP63 PATHWAY	Validated transcriptional targets of TAp63 isoforms
0.2	0.8	PID IL4 2PATHWAY	IL4-mediated signaling events
0.2	0.8	PID REG GR PATHWAY	Glucocorticoid receptor regulatory network

Showing 1 to 10 of 18 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.2	9.2	REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES	Genes involved in Metabolism of amino acids and derivatives
0.8	8.8	REACTOME PPARA ACTIVATES GENE EXPRESSION	Genes involved in PPARA Activates Gene Expression
1.0	5.9	REACTOME BILE ACID AND BILE SALT METABOLISM	Genes involved in Bile acid and bile salt metabolism
0.7	4.3	REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS	Genes involved in Glycerophospholipid biosynthesis
0.5	3.2	REACTOME METABOLISM OF VITAMINS AND COFACTORS	Genes involved in Metabolism of vitamins and cofactors
0.8	3.1	REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION	Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression
0.3	2.6	REACTOME SIGNALING BY RHO GTPASES	Genes involved in Signaling by Rho GTPases
0.2	2.0	REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING	Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.6	1.9	REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION	Genes involved in NOTCH1 Intracellular Domain Regulates Transcription
0.5	1.6	REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS	Genes involved in Sphingolipid de novo biosynthesis

Showing 1 to 10 of 29 entries

Results for AT1G28470

Z-value: 1.80

Transcription factors associated with AT1G28470

Activity-expression correlation:

Activity profile of AT1G28470 motif

Sorted Z-values of AT1G28470 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G28470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: