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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G29280
Z-value: 1.02
Transcription factors associated with AT1G29280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G29280
|
AT1G29280 | WRKY DNA-binding protein 65 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY65 | arTal_v1_Chr1_+_10236337_10236337 | -0.58 | 1.3e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 1.56 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr3_+_19417372_19417401 Show fit | 1.41 |
AT3G52370.2
AT3G52370.1 |
FASCICLIN-like arabinogalactan protein 15 precursor |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 1.34 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 1.33 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_-_4026733_4026733 Show fit | 1.30 |
AT1G11925.1
|
Stigma-specific Stig1 family protein |
|
| arTal_v1_Chr4_+_10142255_10142255 Show fit | 1.28 |
AT4G18350.1
|
nine-cis-epoxycarotenoid dioxygenase 2 |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 1.24 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 1.22 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr3_+_1695156_1695156 Show fit | 1.16 |
AT3G05730.1
|
defensin-like protein |
|
| arTal_v1_Chr1_-_5858446_5858550 Show fit | 1.13 |
AT1G17140.1
AT1G17140.2 |
interactor of constitutive active rops 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G29280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 5.0 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.1 | 3.7 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 3.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 2.8 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 2.4 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.3 | 2.3 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 2.3 | GO:0010252 | auxin homeostasis(GO:0010252) |
| 0.1 | 2.2 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.0 | 2.1 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 24.2 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 9.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 6.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 4.3 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 3.6 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 3.3 | GO:0042651 | thylakoid membrane(GO:0042651) |
| 0.0 | 3.1 | GO:0005874 | microtubule(GO:0005874) |
| 0.0 | 2.2 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 1.6 | GO:0051286 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.1 | 1.6 | GO:0009986 | cell surface(GO:0009986) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 4.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 3.7 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.1 | 3.6 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 3.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 3.3 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 3.1 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.2 | 3.0 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.4 | 2.8 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 2.8 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.2 | 0.5 | PID NECTIN PATHWAY | Nectin adhesion pathway |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.3 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.3 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.3 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.0 | 0.2 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.9 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 0.8 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.1 | 0.6 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 0.5 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.1 | 0.5 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.3 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.3 | REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND | Genes involved in Processive synthesis on the lagging strand |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.2 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |