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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G43700
Z-value: 0.71
Transcription factors associated with AT1G43700
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G43700
|
AT1G43700 | VIRE2-interacting protein 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VIP1 | arTal_v1_Chr1_+_16484231_16484231 | -0.23 | 2.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_2156736_2156736 Show fit | 1.31 |
AT3G06840.1
|
hypothetical protein |
|
| arTal_v1_Chr5_-_26531176_26531176 Show fit | 1.22 |
AT5G66440.1
|
tRNA-methyltransferase non-catalytic subunit trm6MTase subunit |
|
| arTal_v1_Chr4_-_13961611_13961611 Show fit | 1.21 |
AT4G28088.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_+_3857780_3857780 Show fit | 1.16 |
AT3G12110.1
|
actin-11 |
|
| arTal_v1_Chr5_-_21439133_21439133 Show fit | 1.16 |
AT5G52882.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.15 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr3_-_7576623_7576721 Show fit | 1.13 |
AT3G21500.1
AT3G21500.3 AT3G21500.2 |
1-deoxy-D-xylulose 5-phosphate synthase 1 |
|
| arTal_v1_Chr4_+_16084713_16084758 Show fit | 1.11 |
AT4G33420.2
AT4G33420.1 |
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_+_13653579_13653579 Show fit | 1.09 |
AT4G27260.1
|
Auxin-responsive GH3 family protein |
|
| arTal_v1_Chr5_-_17994584_17994722 Show fit | 1.02 |
AT5G44610.3
AT5G44610.2 AT5G44610.1 |
microtubule-associated protein 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G43700
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.0 | 1.7 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.2 | 1.5 | GO:0010019 | chloroplast-nucleus signaling pathway(GO:0010019) |
| 0.3 | 1.3 | GO:0080168 | abscisic acid transport(GO:0080168) |
| 0.2 | 1.3 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.0 | 1.3 | GO:0009695 | jasmonic acid biosynthetic process(GO:0009695) |
| 0.0 | 1.2 | GO:0042335 | cuticle development(GO:0042335) |
| 0.0 | 1.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 1.2 | GO:0030036 | actin cytoskeleton organization(GO:0030036) |
| 0.0 | 1.1 | GO:2000012 | regulation of auxin polar transport(GO:2000012) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.2 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.0 | 0.7 | GO:0009574 | preprophase band(GO:0009574) |
| 0.2 | 0.6 | GO:0070505 | pollen coat(GO:0070505) |
| 0.1 | 0.6 | GO:0034045 | pre-autophagosomal structure membrane(GO:0034045) |
| 0.1 | 0.5 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.1 | 0.4 | GO:0090395 | plant cell papilla(GO:0090395) |
| 0.0 | 0.4 | GO:0035861 | site of double-strand break(GO:0035861) |
| 0.0 | 0.4 | GO:0030119 | AP-type membrane coat adaptor complex(GO:0030119) |
| 0.0 | 0.4 | GO:0005669 | transcription factor TFIID complex(GO:0005669) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
| 0.1 | 1.9 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 1.7 | GO:0016872 | intramolecular lyase activity(GO:0016872) |
| 0.0 | 1.4 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.0 | 1.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 1.3 | GO:0010857 | calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857) |
| 0.0 | 1.3 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 1.2 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 1.2 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.4 | 1.1 | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.2 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |