ISMARA results: AT1G47870

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G47870

Z-value: 0.44

Transcription factors associated with AT1G47870

Gene Symbol	Gene ID	Gene Info
AT1G47870 TAIR	AT1G47870	winged-helix DNA-binding transcription factor family protein

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ATE2F2	arTal_v1_Chr1_+_17634697_17634757	-0.54	3.0e-03	Click!

Activity profile of AT1G47870 motif

Sorted Z-values of AT1G47870 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr5_+_24167996_24168072 Show fit	1.62	AT5G60020.1 AT5G60020.2	LAC17 TAIR Show fit	laccase 17
arTal_v1_Chr2_+_15934244_15934244 Show fit	1.61	AT2G38080.1	IRX12 TAIR Show fit	Laccase/Diphenol oxidase family protein
arTal_v1_Chr5_+_24168245_24168245 Show fit	1.24	AT5G60020.3	LAC17 TAIR Show fit	laccase 17
arTal_v1_Chr5_-_5741500_5741500 Show fit	1.06	AT5G17420.1	IRX3 TAIR Show fit	Cellulose synthase family protein
arTal_v1_Chr5_+_17714390_17714390 Show fit	1.00	AT5G44030.2 AT5G44030.1	CESA4 TAIR Show fit	cellulose synthase A4
arTal_v1_Chr5_+_25050679_25050679 Show fit	0.77	AT5G62380.2	NAC101 TAIR Show fit	NAC-domain protein 101
arTal_v1_Chr5_-_24422274_24422274 Show fit	0.77	AT5G60720.1	AT5G60720 TAIR Show fit	electron transporter, putative (Protein of unknown function, DUF547)
arTal_v1_Chr2_-_15589369_15589369 Show fit	0.70	AT2G37090.1	IRX9 TAIR Show fit	Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr5_+_25050152_25050152 Show fit	0.69	AT5G62380.1	NAC101 TAIR Show fit	NAC-domain protein 101
arTal_v1_Chr5_+_5084524_5084695 Show fit	0.64	AT5G15630.1 AT5G15630.2 AT5G15630.3 AT5G15630.4 AT5G15630.5	IRX6 TAIR Show fit	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

Showing 1 to 10 of 23 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G47870

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	4.4	GO:0009809	lignin biosynthetic process(GO:0009809)
0.1	1.6	GO:0009833	plant-type primary cell wall biogenesis(GO:0009833)
0.5	1.5	GO:0090058	metaxylem development(GO:0090058)
0.2	1.1	GO:0010395	rhamnogalacturonan I metabolic process(GO:0010395)
0.1	0.7	GO:0090059	protoxylem development(GO:0090059)
0.0	0.6	GO:0052324	plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.1	0.4	GO:0009805	coumarin biosynthetic process(GO:0009805)
0.0	0.1	GO:0009808	lignin metabolic process(GO:0009808)

Showing 1 to 8 of 8 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.5	GO:0009531	secondary cell wall(GO:0009531)
0.3	1.1	GO:0010330	cellulose synthase complex(GO:0010330)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.2	4.5	GO:0052716	hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.1	2.7	GO:0016760	cellulose synthase (UDP-forming) activity(GO:0016760)
0.0	2.2	GO:0042803	protein homodimerization activity(GO:0042803)
0.2	0.7	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.3	0.6	GO:0080116	glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0	0.6	GO:0052747	sinapyl alcohol dehydrogenase activity(GO:0052747)
0.1	0.4	GO:0042409	caffeoyl-CoA O-methyltransferase activity(GO:0042409)

Showing 1 to 7 of 7 entries

Results for AT1G47870

Z-value: 0.44

Transcription factors associated with AT1G47870

Activity-expression correlation:

Activity profile of AT1G47870 motif

Sorted Z-values of AT1G47870 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G47870

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: