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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT1G47870

Z-value: 0.44

Transcription factors associated with AT1G47870

Gene Symbol Gene ID Gene Info
AT1G47870
AT1G47870 winged-helix DNA-binding transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ATE2F2arTal_v1_Chr1_+_17634697_17634757-0.543.0e-03Click!

Activity profile of AT1G47870 motif

Sorted Z-values of AT1G47870 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_+_24167996_24168072 1.62 AT5G60020.1
AT5G60020.2
LAC17
laccase 17
arTal_v1_Chr2_+_15934244_15934244 1.61 AT2G38080.1
IRX12
Laccase/Diphenol oxidase family protein
arTal_v1_Chr5_+_24168245_24168245 1.24 AT5G60020.3
LAC17
laccase 17
arTal_v1_Chr5_-_5741500_5741500 1.06 AT5G17420.1
IRX3
Cellulose synthase family protein
arTal_v1_Chr5_+_17714390_17714390 1.00 AT5G44030.2
AT5G44030.1
CESA4
cellulose synthase A4
arTal_v1_Chr5_+_25050679_25050679 0.77 AT5G62380.2
NAC101
NAC-domain protein 101
arTal_v1_Chr5_-_24422274_24422274 0.77 AT5G60720.1
AT5G60720
electron transporter, putative (Protein of unknown function, DUF547)
arTal_v1_Chr2_-_15589369_15589369 0.70 AT2G37090.1
IRX9
Nucleotide-diphospho-sugar transferases superfamily protein
arTal_v1_Chr5_+_25050152_25050152 0.69 AT5G62380.1
NAC101
NAC-domain protein 101
arTal_v1_Chr5_+_5084524_5084695 0.64 AT5G15630.1
AT5G15630.2
AT5G15630.3
AT5G15630.4
AT5G15630.5
IRX6
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
arTal_v1_Chr5_+_17715687_17715687 0.61 AT5G44030.3
CESA4
cellulose synthase A4
arTal_v1_Chr4_-_16063070_16063251 0.60 AT4G33330.2
AT4G33330.1
AT4G33330.5
AT4G33330.3
AT4G33330.4
PGSIP3
plant glycogenin-like starch initiation protein 3
arTal_v1_Chr3_+_6744377_6744377 0.59 AT3G19450.1
ATCAD4
GroES-like zinc-binding alcohol dehydrogenase family protein
arTal_v1_Chr3_-_8217080_8217206 0.52 AT3G23090.1
AT3G23090.2
AT3G23090.4
AT3G23090.3
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr5_+_5438165_5438165 0.45 AT5G16600.1
MYB43
myb domain protein 43
arTal_v1_Chr1_+_27076020_27076020 0.39 AT1G71930.1
VND7
vascular related NAC-domain protein 7
arTal_v1_Chr1_+_27074702_27074702 0.33 AT1G71930.2
VND7
vascular related NAC-domain protein 7
arTal_v1_Chr3_-_8216305_8216305 0.31 AT3G23090.5
AT3G23090
TPX2 (targeting protein for Xklp2) protein family
arTal_v1_Chr4_+_16310409_16310409 0.22 AT4G34050.3
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr4_+_16310768_16310815 0.21 AT4G34050.1
AT4G34050.2
CCoAOMT1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr2_-_12996012_12996012 0.12 AT2G30490.1
C4H
cinnamate-4-hydroxylase
arTal_v1_Chr5_-_4065075_4065075 0.06 AT5G12870.1
MYB46
myb domain protein 46
arTal_v1_Chr4_+_13283526_13283526 0.02 AT4G26220.1
AT4G26220
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT1G47870

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.5 GO:0090058 metaxylem development(GO:0090058)
0.2 1.1 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.1 0.4 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.1 0.7 GO:0090059 protoxylem development(GO:0090059)
0.1 4.4 GO:0009809 lignin biosynthetic process(GO:0009809)
0.1 1.6 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.0 0.6 GO:0052324 plant-type cell wall cellulose biosynthetic process(GO:0052324)
0.0 0.1 GO:0009808 lignin metabolic process(GO:0009808)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.1 GO:0010330 cellulose synthase complex(GO:0010330)
0.1 1.5 GO:0009531 secondary cell wall(GO:0009531)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.6 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.2 4.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2 0.7 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.1 0.4 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.1 2.7 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.6 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)
0.0 2.2 GO:0042803 protein homodimerization activity(GO:0042803)