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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G52880
Z-value: 4.21
Transcription factors associated with AT1G52880
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G52880
|
AT1G52880 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAM | arTal_v1_Chr1_-_19690589_19690589 | 0.83 | 3.6e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 32.15 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr5_-_15825566_15825566 Show fit | 31.11 |
AT5G39520.1
|
hypothetical protein (DUF1997) |
|
| arTal_v1_Chr1_+_30150897_30151006 Show fit | 27.25 |
AT1G80160.3
AT1G80160.1 AT1G80160.2 |
Lactoylglutathione lyase / glyoxalase I family protein |
|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 27.21 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_+_22935510_22935510 Show fit | 25.69 |
AT3G61930.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_18781973_18781973 Show fit | 24.83 |
AT2G45570.1
|
cytochrome P450, family 76, subfamily C, polypeptide 2 |
|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 24.83 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr4_+_8908763_8908879 Show fit | 24.52 |
AT4G15610.1
AT4G15610.2 |
Uncharacterized protein family (UPF0497) |
|
| arTal_v1_Chr2_+_18641563_18641563 Show fit | 24.32 |
AT2G45210.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 24.12 |
AT1G26390.1
|
FAD-binding Berberine family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G52880
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 134.9 | GO:0007568 | aging(GO:0007568) |
| 0.6 | 127.9 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 1.0 | 68.2 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 12.7 | 63.3 | GO:0051091 | positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091) |
| 1.3 | 57.6 | GO:0009749 | response to glucose(GO:0009749) |
| 0.8 | 55.9 | GO:0009624 | response to nematode(GO:0009624) |
| 0.5 | 51.3 | GO:0010200 | response to chitin(GO:0010200) |
| 1.2 | 50.9 | GO:0006623 | protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666) |
| 0.6 | 48.7 | GO:0009615 | response to virus(GO:0009615) |
| 1.1 | 45.9 | GO:0009062 | fatty acid catabolic process(GO:0009062) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 387.4 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.2 | 74.8 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 69.3 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 66.5 | GO:0005737 | cytoplasm(GO:0005737) |
| 0.4 | 60.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.8 | 56.0 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.2 | 50.0 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 47.1 | GO:0005739 | mitochondrion(GO:0005739) |
| 2.8 | 42.4 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.3 | 38.1 | GO:0000790 | nuclear chromatin(GO:0000790) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 165.7 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.7 | 90.9 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.5 | 68.7 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 67.9 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.3 | 57.1 | GO:0005516 | calmodulin binding(GO:0005516) |
| 1.5 | 53.5 | GO:0019187 | beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753) |
| 0.4 | 52.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 3.4 | 51.6 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
| 0.6 | 45.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 6.1 | 42.6 | GO:0010279 | indole-3-acetic acid amido synthetase activity(GO:0010279) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 6.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 2.1 | 6.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 1.5 | 4.6 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.6 | 3.9 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.7 | 2.2 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.4 | 1.2 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.3 | 1.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.7 | 29.4 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 2.3 | 24.9 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 3.6 | 21.8 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.4 | 13.7 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 2.7 | 10.8 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 1.5 | 6.0 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.8 | 5.8 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 1.1 | 4.6 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
| 0.9 | 4.6 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.3 | 2.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |