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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G69570
Z-value: 1.20
Transcription factors associated with AT1G69570
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G69570
|
AT1G69570 | Dof-type zinc finger DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G69570 | arTal_v1_Chr1_-_26163715_26163715 | -0.91 | 3.3e-11 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 6.51 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 5.25 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 5.11 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr1_-_24606722_24606722 Show fit | 4.98 |
AT1G66100.1
|
Plant thionin |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 4.96 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 4.80 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 4.42 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 4.15 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 4.05 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 3.98 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G69570
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 16.7 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.5 | 12.4 | GO:0006636 | unsaturated fatty acid biosynthetic process(GO:0006636) |
| 0.2 | 12.4 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.2 | 12.0 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.6 | 11.3 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 10.7 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
| 1.0 | 10.5 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
| 0.1 | 10.1 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.2 | 9.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 8.9 | GO:0043572 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 131.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 41.2 | GO:0048046 | apoplast(GO:0048046) |
| 0.1 | 35.5 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 22.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 17.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 16.4 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.2 | 11.0 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.3 | 8.1 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.2 | 4.9 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 4.7 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 14.2 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.6 | 14.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 12.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 1.4 | 11.5 | GO:0019137 | thioglucosidase activity(GO:0019137) |
| 0.5 | 11.4 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.8 | 10.1 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.4 | 9.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 9.4 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 9.2 | GO:0008134 | transcription factor binding(GO:0008134) |
| 0.4 | 8.9 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 1.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 1.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.3 | 1.4 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 1.4 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.9 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.1 | 0.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.7 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.4 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 4.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.4 | 1.5 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.5 | 1.4 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.3 | 1.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.2 | 1.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.1 | 1.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.3 | 1.0 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.1 | 0.9 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.3 | 0.8 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.1 | 0.7 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |