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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT1G72740
Z-value: 2.30
Transcription factors associated with AT1G72740
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT1G72740
|
AT1G72740 | Homeodomain-like/winged-helix DNA-binding family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT1G72740 | arTal_v1_Chr1_-_27382924_27382924 | 0.17 | 3.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_11668690_11668690 Show fit | 3.28 |
AT1G32350.1
AT1G32350.2 |
alternative oxidase 1D |
|
| arTal_v1_Chr3_-_1136397_1136397 Show fit | 2.85 |
AT3G04290.1
|
Li-tolerant lipase 1 |
|
| arTal_v1_Chr3_+_16297979_16297979 Show fit | 2.68 |
AT3G44750.2
|
histone deacetylase 3 |
|
| arTal_v1_Chr2_+_7190937_7190937 Show fit | 2.68 |
AT2G16586.1
|
transmembrane protein |
|
| arTal_v1_Chr2_+_1025_1025 Show fit | 2.68 |
AT2G01008.1
|
maternal effect embryo arrest protein |
|
| arTal_v1_Chr5_+_9540861_9540861 Show fit | 2.64 |
AT5G27120.1
|
NOP56-like pre RNA processing ribonucleoprotein |
|
| arTal_v1_Chr1_-_17983377_17983377 Show fit | 2.64 |
AT1G48630.1
|
receptor for activated C kinase 1B |
|
| arTal_v1_Chr3_+_16163709_16163850 Show fit | 2.61 |
AT3G44590.1
AT3G44590.2 |
60S acidic ribosomal protein family |
|
| arTal_v1_Chr3_+_16297656_16297656 Show fit | 2.60 |
AT3G44750.1
|
histone deacetylase 3 |
|
| arTal_v1_Chr4_+_8020951_8020951 Show fit | 2.60 |
AT4G13850.2
AT4G13850.4 AT4G13850.3 |
glycine-rich RNA-binding protein 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT1G72740
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 44.2 | GO:0006412 | translation(GO:0006412) |
| 0.7 | 23.1 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) |
| 0.4 | 15.5 | GO:0042273 | ribosomal large subunit biogenesis(GO:0042273) |
| 0.2 | 8.7 | GO:0042274 | ribosomal small subunit biogenesis(GO:0042274) |
| 0.3 | 8.4 | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462) |
| 0.2 | 8.1 | GO:0006414 | translational elongation(GO:0006414) |
| 0.2 | 7.8 | GO:0002181 | cytoplasmic translation(GO:0002181) |
| 0.6 | 6.7 | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463) |
| 0.3 | 6.7 | GO:0009294 | genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294) |
| 1.1 | 6.4 | GO:0072344 | rescue of stalled ribosome(GO:0072344) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 70.2 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.4 | 45.5 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.1 | 42.0 | GO:0005730 | nucleolus(GO:0005730) |
| 1.0 | 10.3 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.1 | 6.4 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 1.2 | 5.9 | GO:0072588 | box H/ACA snoRNP complex(GO:0031429) box H/ACA RNP complex(GO:0072588) |
| 0.2 | 5.4 | GO:0032040 | small-subunit processome(GO:0032040) |
| 1.3 | 4.0 | GO:0034457 | Mpp10 complex(GO:0034457) |
| 0.2 | 3.8 | GO:1990351 | transporter complex(GO:1990351) |
| 0.0 | 3.5 | GO:0033643 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 63.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 40.4 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 13.1 | GO:0003723 | RNA binding(GO:0003723) |
| 0.3 | 12.4 | GO:0019843 | rRNA binding(GO:0019843) |
| 0.1 | 11.7 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.7 | 11.1 | GO:0030515 | snoRNA binding(GO:0030515) |
| 0.1 | 9.9 | GO:0042393 | histone binding(GO:0042393) |
| 0.1 | 7.0 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 2.1 | 6.4 | GO:0005080 | MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591) |
| 0.5 | 5.9 | GO:0070180 | large ribosomal subunit rRNA binding(GO:0070180) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.1 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.3 | 2.0 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.2 | 1.1 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.2 | 0.9 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 0.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.3 | PID RAS PATHWAY | Regulation of Ras family activation |
| 0.0 | 0.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.1 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.3 | 2.4 | REACTOME PROTEIN FOLDING | Genes involved in Protein folding |
| 0.1 | 2.4 | REACTOME TRANSLATION | Genes involved in Translation |
| 0.2 | 1.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.3 | 0.9 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
| 0.2 | 0.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.8 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 0.6 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.1 | 0.6 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |