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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G06200
Z-value: 2.92
Transcription factors associated with AT2G06200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G06200
|
AT2G06200 | growth-regulating factor 6 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GRF6 | arTal_v1_Chr2_+_2426176_2426239 | 0.04 | 8.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_17855637_17855637 Show fit | 9.63 |
AT4G37990.1
|
cinnamyl alcohol dehydrogenase 8 |
|
| arTal_v1_Chr3_-_8007836_8007836 Show fit | 9.35 |
AT3G22600.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 8.70 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr1_-_30053936_30053936 Show fit | 8.64 |
AT1G79900.1
|
Mitochondrial substrate carrier family protein |
|
| arTal_v1_Chr3_-_21189859_21189967 Show fit | 8.06 |
AT3G57260.1
AT3G57260.2 |
beta-1,3-glucanase 2 |
|
| arTal_v1_Chr3_+_17724400_17724400 Show fit | 7.87 |
AT3G48020.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_12461907_12461907 Show fit | 7.49 |
AT4G24000.1
|
cellulose synthase like G2 |
|
| arTal_v1_Chr1_-_10356482_10356482 Show fit | 7.48 |
AT1G29640.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr1_-_4571229_4571229 Show fit | 7.34 |
AT1G13340.1
|
Regulator of Vps4 activity in the MVB pathway protein |
|
| arTal_v1_Chr1_-_19698482_19698482 Show fit | 7.27 |
AT1G52890.1
|
NAC domain containing protein 19 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G06200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 42.8 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.1 | 30.8 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 0.2 | 29.4 | GO:0000398 | mRNA splicing, via spliceosome(GO:0000398) |
| 0.2 | 29.0 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.3 | 21.0 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.2 | 20.2 | GO:0000209 | protein polyubiquitination(GO:0000209) |
| 0.3 | 17.6 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.4 | 15.5 | GO:0045324 | late endosome to vacuole transport(GO:0045324) |
| 0.3 | 14.6 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.3 | 13.4 | GO:0009626 | plant-type hypersensitive response(GO:0009626) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 70.8 | GO:0005829 | cytosol(GO:0005829) |
| 0.2 | 35.0 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 20.7 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.2 | 16.5 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.1 | 14.2 | GO:0000785 | chromatin(GO:0000785) |
| 0.6 | 12.8 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
| 0.2 | 12.8 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 12.6 | GO:0005654 | nucleoplasm(GO:0005654) |
| 2.1 | 12.5 | GO:0005776 | autophagosome(GO:0005776) |
| 0.3 | 11.3 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 40.6 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 38.8 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 32.5 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.1 | 29.6 | GO:0044212 | regulatory region DNA binding(GO:0000975) transcription regulatory region sequence-specific DNA binding(GO:0000976) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
| 0.4 | 20.5 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
| 0.3 | 19.4 | GO:0043130 | ubiquitin binding(GO:0043130) |
| 0.4 | 17.5 | GO:0017137 | Rab GTPase binding(GO:0017137) |
| 0.4 | 16.2 | GO:0004707 | MAP kinase activity(GO:0004707) |
| 0.2 | 16.0 | GO:0015662 | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism(GO:0015662) |
| 0.1 | 15.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 8.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.4 | 7.0 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 1.7 | 5.2 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.8 | 3.8 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.3 | 3.2 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.3 | 2.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.6 | 1.9 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 1.7 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
| 0.6 | 1.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.3 | 1.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 7.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 1.1 | 6.6 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 1.0 | 4.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.5 | 4.1 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.5 | 3.7 | REACTOME RESOLUTION OF AP SITES VIA THE MULTIPLE NUCLEOTIDE PATCH REPLACEMENT PATHWAY | Genes involved in Resolution of AP sites via the multiple-nucleotide patch replacement pathway |
| 1.1 | 3.2 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.4 | 2.2 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 1.0 | 1.9 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
| 0.6 | 1.9 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 1.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |