ISMARA results: AT2G36010

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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G36010_AT5G02470

Z-value: 1.15

Transcription factors associated with AT2G36010_AT5G02470

Gene Symbol	Gene ID	Gene Info
AT2G36010 TAIR	AT2G36010	E2F transcription factor 3
AT5G02470 TAIR	AT5G02470	Transcription factor DP

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
DPA	arTal_v1_Chr5_-_544938_544955	-0.51	5.1e-03	Click!
E2F3	arTal_v1_Chr2_+_15119516_15119589	0.36	5.8e-02	Click!

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
arTal_v1_Chr3_-_17288953_17289006 Show fit	4.70	AT3G46940.1 AT3G46940.2	DUT1 TAIR Show fit	DUTP-PYROPHOSPHATASE-LIKE 1
arTal_v1_Chr1_+_2263037_2263037 Show fit	4.56	AT1G07370.1	PCNA1 TAIR Show fit	proliferating cellular nuclear antigen 1
arTal_v1_Chr1_+_16970214_16970240 Show fit	4.29	AT1G44900.2 AT1G44900.1	MCM2 TAIR Show fit	minichromosome maintenance (MCM2/3/5) family protein
arTal_v1_Chr2_+_9293261_9293261 Show fit	3.87	AT2G21790.1	RNR1 TAIR Show fit	ribonucleotide reductase 1
arTal_v1_Chr3_-_9981620_9981620 Show fit	3.57	AT3G27060.1	TSO2 TAIR Show fit	Ferritin/ribonucleotide reductase-like family protein
arTal_v1_Chr5_+_19932114_19932159 Show fit	3.52	AT5G49160.1 AT5G49160.2	MET1 TAIR Show fit	methyltransferase 1
arTal_v1_Chr5_+_26776953_26776971 Show fit	3.24	AT5G67100.2 AT5G67100.1	ICU2 TAIR Show fit	DNA-directed DNA polymerase
arTal_v1_Chr2_+_16934621_16934621 Show fit	3.09	AT2G40550.1	ETG1 TAIR Show fit	E2F target protein 1 (ETG1)
arTal_v1_Chr2_-_7130729_7130729 Show fit	2.92	AT2G16440.1	MCM4 TAIR Show fit	Minichromosome maintenance (MCM2/3/5) family protein
arTal_v1_Chr1_-_26253687_26253687 Show fit	2.84	AT1G69770.1	CMT3 TAIR Show fit	chromomethylase 3

Showing 1 to 10 of 85 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.0	12.1	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)
2.6	10.4	GO:1902975	cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.2	7.6	GO:0007062	sister chromatid cohesion(GO:0007062)
2.1	6.4	GO:0010069	zygote asymmetric cytokinesis in embryo sac(GO:0010069)
1.1	5.3	GO:0006272	leading strand elongation(GO:0006272)
0.6	5.0	GO:0033314	mitotic DNA replication checkpoint(GO:0033314)
0.8	4.7	GO:0045005	DNA-dependent DNA replication maintenance of fidelity(GO:0045005)
0.0	4.6	GO:0006260	DNA replication(GO:0006260)
1.4	4.1	GO:0071163	DNA replication preinitiation complex assembly(GO:0071163)
0.8	3.9	GO:0000085	mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)

Showing 1 to 10 of 30 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.9	8.8	GO:0042555	MCM complex(GO:0042555)
2.5	7.5	GO:0005658	alpha DNA polymerase:primase complex(GO:0005658)
0.0	5.0	GO:0005730	nucleolus(GO:0005730)
0.0	3.9	GO:1990204	oxidoreductase complex(GO:1990204)
0.6	3.7	GO:0000808	origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.9	2.8	GO:0036387	nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.3	2.5	GO:0005662	DNA replication factor A complex(GO:0005662)
0.3	2.0	GO:0031298	replication fork protection complex(GO:0031298)
0.0	1.9	GO:0090575	RNA polymerase II transcription factor complex(GO:0090575)
0.3	1.8	GO:0030892	nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)

Showing 1 to 10 of 20 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.9	18.3	GO:0003688	DNA replication origin binding(GO:0003688)
2.5	7.4	GO:0061731	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.6	6.4	GO:0003886	DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0	5.3	GO:0030234	enzyme regulator activity(GO:0030234)
0.5	4.7	GO:0009378	four-way junction helicase activity(GO:0009378)
0.4	4.7	GO:0047429	nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.1	4.0	GO:0003678	DNA helicase activity(GO:0003678)
0.0	2.5	GO:0003697	single-stranded DNA binding(GO:0003697)
0.0	2.5	GO:0042393	histone binding(GO:0042393)
0.6	2.2	GO:0070182	DNA polymerase binding(GO:0070182)

Showing 1 to 10 of 21 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.1	10.7	PID ATR PATHWAY	ATR signaling pathway
0.5	3.2	PID FANCONI PATHWAY	Fanconi anemia pathway
0.4	2.9	PID CMYB PATHWAY	C-MYB transcription factor network

Showing 1 to 3 of 3 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.3	9.0	REACTOME UNWINDING OF DNA	Genes involved in Unwinding of DNA
0.9	7.0	REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND	Genes involved in Processive synthesis on the lagging strand
1.0	3.9	REACTOME G1 S SPECIFIC TRANSCRIPTION	Genes involved in G1/S-Specific Transcription
0.4	2.0	REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION	Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.4	1.8	REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE	Genes involved in Dopamine Neurotransmitter Release Cycle
0.4	1.7	REACTOME FANCONI ANEMIA PATHWAY	Genes involved in Fanconi Anemia pathway
0.1	1.5	REACTOME MEIOTIC RECOMBINATION	Genes involved in Meiotic Recombination

Showing 1 to 7 of 7 entries

Results for AT2G36010_AT5G02470

Z-value: 1.15

Transcription factors associated with AT2G36010_AT5G02470

Activity-expression correlation:

Activity profile of AT2G36010_AT5G02470 motif

Sorted Z-values of AT2G36010_AT5G02470 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G36010_AT5G02470

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: