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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G38470
Z-value: 1.08
Transcription factors associated with AT2G38470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G38470
|
AT2G38470 | WRKY DNA-binding protein 33 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY33 | arTal_v1_Chr2_+_16108235_16108235 | -0.40 | 3.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 5.13 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 5.02 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.93 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr3_+_3857780_3857780 Show fit | 3.85 |
AT3G12110.1
|
actin-11 |
|
| arTal_v1_Chr3_-_3357754_3357754 Show fit | 3.80 |
AT3G10720.2
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 3.74 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_+_10375599_10375599 Show fit | 3.72 |
AT1G29670.2
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 3.63 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 3.62 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr1_-_4394343_4394454 Show fit | 3.40 |
AT1G12900.3
AT1G12900.4 AT1G12900.1 AT1G12900.2 AT1G12900.5 |
glyceraldehyde 3-phosphate dehydrogenase A subunit 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G38470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 19.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 11.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 1.1 | 9.8 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 7.8 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.2 | 7.1 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.2 | 6.8 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.1 | 6.8 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.2 | 6.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.4 | 6.1 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.3 | 5.7 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 41.5 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 32.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 24.0 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 13.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 13.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 8.2 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 7.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 6.8 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 6.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.6 | 4.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.1 | GO:0046983 | protein dimerization activity(GO:0046983) |
| 0.2 | 14.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.0 | 12.8 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.5 | 10.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.7 | 8.1 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.3 | 8.0 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.8 | 7.6 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.3 | 7.6 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.3 | 6.8 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.2 | 6.8 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.2 | 1.8 | PID ATR PATHWAY | ATR signaling pathway |
| 0.2 | 1.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.3 | 1.1 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
| 0.1 | 1.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.4 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.2 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
| 0.3 | 2.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.1 | 1.9 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.5 | 1.4 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.3 | 1.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 1.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 0.8 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.7 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |