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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G40620
Z-value: 0.98
Transcription factors associated with AT2G40620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G40620
|
AT2G40620 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT2G40620 | arTal_v1_Chr2_-_16957183_16957183 | -0.30 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 4.83 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.43 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 4.33 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr5_+_17712203_17712203 Show fit | 3.73 |
AT5G44020.1
|
HAD superfamily, subfamily IIIB acid phosphatase |
|
| arTal_v1_Chr3_+_5556710_5556710 Show fit | 3.54 |
AT3G16370.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr1_-_4090857_4090857 Show fit | 3.30 |
AT1G12090.1
|
extensin-like protein |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 3.22 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 3.22 |
AT1G55330.1
|
arabinogalactan protein 21 |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 3.20 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr2_+_9844134_9844230 Show fit | 3.17 |
AT2G23130.1
AT2G23130.2 |
arabinogalactan protein 17 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G40620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 12.4 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.1 | 10.7 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 8.6 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.2 | 7.9 | GO:0005991 | trehalose metabolic process(GO:0005991) |
| 0.2 | 7.4 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 1.2 | 7.0 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
| 0.2 | 6.5 | GO:0000038 | very long-chain fatty acid metabolic process(GO:0000038) |
| 0.1 | 6.0 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 5.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 4.8 | GO:0032544 | plastid translation(GO:0032544) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 29.2 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 27.0 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 24.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 22.1 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.1 | 14.3 | GO:0042651 | photosynthetic membrane(GO:0034357) thylakoid membrane(GO:0042651) |
| 0.1 | 11.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 10.7 | GO:0031978 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 10.3 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 5.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.8 | GO:0044434 | chloroplast part(GO:0044434) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 16.2 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.4 | 9.4 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 8.6 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.3 | 8.4 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 8.1 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.3 | 7.5 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.1 | 7.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.2 | 6.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.2 | 5.6 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
| 0.1 | 5.4 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 3.7 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.3 | 3.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 1.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.2 | 1.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
| 0.2 | 1.2 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 1.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.3 | 0.3 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
| 0.1 | 0.3 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.3 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.2 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.3 | 2.1 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.3 | 2.1 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.1 | 1.6 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.2 | 1.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 1.1 | REACTOME G2 M CHECKPOINTS | Genes involved in G2/M Checkpoints |
| 0.3 | 0.8 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.7 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.1 | 0.7 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |