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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G42200
Z-value: 1.13
Transcription factors associated with AT2G42200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G42200
|
AT2G42200 | squamosa promoter binding protein-like 9 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL9 | arTal_v1_Chr2_+_17587169_17587169 | 0.02 | 9.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_18873911_18873911 Show fit | 2.36 |
AT3G50770.1
|
calmodulin-like 41 |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 2.34 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr1_-_9131779_9131779 Show fit | 2.12 |
AT1G26390.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr5_+_18613239_18613239 Show fit | 2.08 |
AT5G45890.1
|
senescence-associated gene 12 |
|
| arTal_v1_Chr1_+_28177670_28177670 Show fit | 1.98 |
AT1G75040.1
|
pathogenesis-related protein 5 |
|
| arTal_v1_Chr4_+_6491017_6491017 Show fit | 1.90 |
AT4G10500.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 1.88 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr2_+_18289824_18289824 Show fit | 1.87 |
AT2G44240.1
|
NEP-interacting protein (DUF239) |
|
| arTal_v1_Chr4_-_9201643_9201643 Show fit | 1.81 |
AT4G16260.2
AT4G16260.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr3_+_4374214_4374214 Show fit | 1.81 |
AT3G13433.1
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G42200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 31.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 11.7 | GO:0016567 | protein ubiquitination(GO:0016567) |
| 0.2 | 8.6 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.1 | 7.1 | GO:0010260 | leaf senescence(GO:0010150) organ senescence(GO:0010260) |
| 0.0 | 6.8 | GO:0006979 | response to oxidative stress(GO:0006979) |
| 0.0 | 6.6 | GO:0006511 | ubiquitin-dependent protein catabolic process(GO:0006511) |
| 0.2 | 6.5 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.1 | 6.5 | GO:0034976 | response to endoplasmic reticulum stress(GO:0034976) |
| 0.1 | 5.8 | GO:0009631 | cold acclimation(GO:0009631) |
| 0.2 | 5.6 | GO:0030150 | protein import into mitochondrial matrix(GO:0030150) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 40.4 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 23.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.0 | 10.5 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.1 | 8.5 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 5.9 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 5.8 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
| 0.0 | 5.7 | GO:0098791 | Golgi subcompartment(GO:0098791) |
| 0.1 | 5.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 5.3 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.3 | 5.2 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 10.1 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 9.0 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 8.0 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.0 | 6.7 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 6.5 | GO:0043130 | ubiquitin binding(GO:0043130) |
| 0.1 | 5.9 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 5.6 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 5.4 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 5.3 | GO:0004364 | glutathione transferase activity(GO:0004364) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 1.0 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.9 | PID S1P META PATHWAY | Sphingosine 1-phosphate (S1P) pathway |
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.5 | PID IL4 2PATHWAY | IL4-mediated signaling events |
| 0.1 | 0.5 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.4 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.4 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
| 0.1 | 0.3 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.5 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 0.3 | 2.0 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.2 | 1.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 1.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.2 | 1.1 | REACTOME RECYCLING OF BILE ACIDS AND SALTS | Genes involved in Recycling of bile acids and salts |
| 0.3 | 0.9 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
| 0.0 | 0.9 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 0.8 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.1 | 0.8 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.0 | 0.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |