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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT2G47070
Z-value: 0.79
Transcription factors associated with AT2G47070
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G47070
|
AT2G47070 | squamosa promoter binding protein-like 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL1 | arTal_v1_Chr2_+_19336653_19336695 | -0.85 | 1.1e-08 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 2.52 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr1_-_29635931_29635931 Show fit | 2.20 |
AT1G78820.1
|
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
|
| arTal_v1_Chr5_-_25343369_25343369 Show fit | 2.05 |
AT5G63180.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 1.95 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_14524607_14524607 Show fit | 1.91 |
AT2G34430.1
|
light-harvesting chlorophyll-protein complex II subunit B1 |
|
| arTal_v1_Chr4_-_17777445_17777445 Show fit | 1.84 |
AT4G37800.1
|
xyloglucan endotransglucosylase/hydrolase 7 |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.76 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr5_+_18634041_18634041 Show fit | 1.74 |
AT5G45950.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_-_14562863_14562863 Show fit | 1.74 |
AT5G36910.1
|
thionin 2.2 |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.72 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G47070
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 5.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.1 | 3.8 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 3.5 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.5 | 3.2 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.2 | 3.2 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
| 0.0 | 2.7 | GO:0009860 | pollen tube growth(GO:0009860) |
| 0.2 | 2.6 | GO:1902183 | regulation of shoot apical meristem development(GO:1902183) |
| 0.1 | 2.5 | GO:0009838 | abscission(GO:0009838) |
| 0.4 | 2.2 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 45.4 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 7.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 5.0 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 4.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 3.8 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.1 | 3.7 | GO:0009528 | plastid inner membrane(GO:0009528) |
| 0.1 | 3.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.2 | 2.6 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 2.4 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.1 | 2.1 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 6.4 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.2 | 4.6 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 4.4 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 4.0 | GO:0042802 | identical protein binding(GO:0042802) |
| 0.1 | 3.7 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.0 | 3.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.3 | 3.6 | GO:0042389 | omega-3 fatty acid desaturase activity(GO:0042389) |
| 0.2 | 3.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 3.5 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 1.1 | 3.2 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.6 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.3 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.2 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.2 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.4 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.8 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.2 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 0.0 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |