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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT2G47270

Z-value: 2.16

Transcription factors associated with AT2G47270

Gene Symbol Gene ID Gene Info
AT2G47270
AT2G47270 transcription factor UPBEAT protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
UPB1arTal_v1_Chr2_-_19412328_194123280.973.1e-17Click!

Activity profile of AT2G47270 motif

Sorted Z-values of AT2G47270 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr1_+_20387058_20387058 22.75 AT1G54575.1
AT1G54575
hypothetical protein
arTal_v1_Chr1_+_20386809_20386809 21.88 AT1G54575.2
AT1G54575
hypothetical protein
arTal_v1_Chr4_-_9201643_9201643 19.47 AT4G16260.2
AT4G16260.1
AT4G16260
Glycosyl hydrolase superfamily protein
arTal_v1_Chr1_-_20385380_20385380 14.88 AT1G54570.1
PES1
Esterase/lipase/thioesterase family protein
arTal_v1_Chr3_-_1063103_1063234 14.08 AT3G04070.2
AT3G04070.1
NAC047
NAC domain containing protein 47
arTal_v1_Chr5_-_9247540_9247540 13.63 AT5G26340.1
MSS1
Major facilitator superfamily protein
arTal_v1_Chr5_-_17994584_17994722 10.86 AT5G44610.3
AT5G44610.2
AT5G44610.1
MAP18
microtubule-associated protein 18
arTal_v1_Chr4_-_14393381_14393381 10.13 AT4G29190.1
OZF2
Zinc finger C-x8-C-x5-C-x3-H type family protein
arTal_v1_Chr5_-_16085213_16085213 10.08 AT5G40240.3
AT5G40240.1
UMAMIT40
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr1_-_7086873_7086873 10.01 AT1G20440.1
COR47
cold-regulated 47
arTal_v1_Chr2_-_8091736_8091736 9.91 AT2G18660.1
PNP-A
plant natriuretic peptide A
arTal_v1_Chr3_-_19165322_19165322 9.68 AT3G51660.1
AT3G51660
Tautomerase/MIF superfamily protein
arTal_v1_Chr4_-_437591_437605 9.53 AT4G01010.1
AT4G01010.2
CNGC13
cyclic nucleotide-gated channel 13
arTal_v1_Chr3_-_17475274_17475274 9.38 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
arTal_v1_Chr5_-_16084957_16084957 8.80 AT5G40240.2
UMAMIT40
nodulin MtN21 /EamA-like transporter family protein
arTal_v1_Chr2_-_13657369_13657369 7.51 AT2G32140.1
AT2G32140
transmembrane receptor
arTal_v1_Chr2_+_13658888_13659004 7.48 AT2G32150.1
AT2G32150.2
AT2G32150.3
AT2G32150
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
arTal_v1_Chr2_+_487398_487398 6.76 AT2G02040.1
PTR2
peptide transporter 2
arTal_v1_Chr2_+_18624264_18624354 6.51 AT2G45170.1
AT2G45170.2
ATG8E
AUTOPHAGY 8E
arTal_v1_Chr1_+_26423874_26423874 6.43 AT1G70170.1
MMP
matrix metalloproteinase
arTal_v1_Chr2_-_19332659_19332659 6.41 AT2G47050.1
AT2G47050
Plant invertase/pectin methylesterase inhibitor superfamily protein
arTal_v1_Chr2_+_8094614_8094614 6.33 AT2G18680.1
AT2G18680
transmembrane protein
arTal_v1_Chr1_+_10236337_10236337 6.23 AT1G29280.1
WRKY65
WRKY DNA-binding protein 65
arTal_v1_Chr2_-_14310608_14310608 6.12 AT2G33830.2
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr5_+_6802282_6802282 6.11 AT5G20150.1
SPX1
SPX domain-containing protein 1
arTal_v1_Chr1_-_6812757_6812757 6.08 AT1G19700.3
AT1G19700.1
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr2_-_14310339_14310339 6.02 AT2G33830.1
AT2G33830
Dormancy/auxin associated family protein
arTal_v1_Chr2_+_8293640_8293640 5.98 AT2G19130.1
AT2G19130
S-locus lectin protein kinase family protein
arTal_v1_Chr1_-_6811994_6811994 5.86 AT1G19700.2
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr2_+_13662138_13662213 5.82 AT2G32160.4
AT2G32160.3
AT2G32160.1
AT2G32160.2
AT2G32160
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
arTal_v1_Chr2_+_8093220_8093220 5.76 AT2G18670.1
AT2G18670
RING/U-box superfamily protein
arTal_v1_Chr1_-_6812523_6812523 5.67 AT1G19700.4
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr1_-_6813063_6813063 5.49 AT1G19700.5
BEL10
BEL1-like homeodomain 10
arTal_v1_Chr3_-_4214530_4214530 5.47 AT3G13100.1
AT3G13100.2
ABCC7
multidrug resistance-associated protein 7
arTal_v1_Chr2_+_7564240_7564276 5.16 AT2G17420.1
AT2G17420.2
NTRA
NADPH-dependent thioredoxin reductase A
arTal_v1_Chr1_+_26419894_26419894 4.99 AT1G70160.1
AT1G70160
zinc finger MYND domain protein
arTal_v1_Chr5_+_16675582_16675868 4.96 AT5G41700.5
AT5G41700.1
AT5G41700.3
AT5G41700.4
AT5G41700.2
UBC8
ubiquitin conjugating enzyme 8
arTal_v1_Chr5_-_19172956_19172956 4.90 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
arTal_v1_Chr2_-_18801383_18801471 4.86 AT2G45640.1
AT2G45640.2
SAP18
SIN3 associated polypeptide P18
arTal_v1_Chr1_-_21311428_21311521 4.84 AT1G57540.2
AT1G57540.3
AT1G57540.1
AT1G57540
40S ribosomal protein
arTal_v1_Chr3_+_20695433_20695435 4.10 AT3G55740.1
AT3G55740.2
PROT2
proline transporter 2
arTal_v1_Chr5_+_26003882_26003983 3.96 AT5G65090.1
AT5G65090.3
BST1
DNAse I-like superfamily protein
arTal_v1_Chr3_+_4180355_4180388 3.96 AT3G13060.2
AT3G13060.5
AT3G13060.1
AT3G13060.6
ECT5
evolutionarily conserved C-terminal region 5
arTal_v1_Chr5_-_8358546_8358546 3.95 AT5G24470.1
PRR5
two-component response regulator-like protein
arTal_v1_Chr2_-_18620451_18620451 3.65 AT2G45160.1
HAM1
GRAS family transcription factor
arTal_v1_Chr3_+_4180154_4180163 3.62 AT3G13060.3
AT3G13060.4
ECT5
evolutionarily conserved C-terminal region 5
arTal_v1_Chr3_+_19569256_19569256 3.51 AT3G52800.1
AT3G52800.2
AT3G52800
A20/AN1-like zinc finger family protein
arTal_v1_Chr5_+_18228768_18228805 3.38 AT5G45110.1
AT5G45110.2
NPR3
NPR1-like protein 3
arTal_v1_Chr1_+_7090941_7090941 3.25 AT1G20460.1
AT1G20460
NADH-ubiquinone oxidoreductase chain
arTal_v1_Chr3_+_20695930_20695930 3.14 AT3G55740.3
PROT2
proline transporter 2
arTal_v1_Chr4_+_438991_438991 3.12 AT4G01020.1
AT4G01020
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
arTal_v1_Chr2_+_801527_801527 2.96 AT2G02810.1
UTR1
UDP-galactose transporter 1
arTal_v1_Chr5_+_22817480_22817480 2.94 AT5G56340.1
ATCRT1
RING/U-box superfamily protein
arTal_v1_Chr4_+_10375244_10375340 2.88 AT4G18950.1
AT4G18950.2
AT4G18950
Integrin-linked protein kinase family
arTal_v1_Chr5_+_26004683_26004683 2.74 AT5G65090.2
BST1
DNAse I-like superfamily protein
arTal_v1_Chr1_-_8727212_8727212 2.62 AT1G24625.1
ZFP7
zinc finger protein 7
arTal_v1_Chr3_-_4216302_4216302 2.59 AT3G13110.1
SERAT2%3B2
serine acetyltransferase 2;2
arTal_v1_Chr5_-_1267416_1267416 2.49 AT5G04470.1
SIM
cyclin-dependent protein kinase inhibitor
arTal_v1_Chr5_+_3052062_3052062 2.40 AT5G09810.1
ACT7
actin 7
arTal_v1_Chr3_-_7709933_7709933 2.32 AT3G21890.1
BBX31
B-box type zinc finger family protein
arTal_v1_Chr5_+_3144200_3144200 2.24 AT5G10050.1
AT5G10050
NAD(P)-binding Rossmann-fold superfamily protein
arTal_v1_Chr3_+_677240_677240 2.17 AT3G03000.1
AT3G03000
EF hand calcium-binding protein family
arTal_v1_Chr2_+_859441_859441 2.15 AT2G02955.1
MEE12
maternal effect embryo arrest 12
arTal_v1_Chr4_+_2718170_2718212 2.11 AT4G05320.1
AT4G05320.5
AT4G05320.7
AT4G05320.8
AT4G05320.3
AT4G05320.4
UBQ10
polyubiquitin 10
arTal_v1_Chr4_+_2717977_2717980 2.10 AT4G05320.2
AT4G05320.6
UBQ10
polyubiquitin 10
arTal_v1_Chr1_+_26426269_26426363 1.71 AT1G70180.1
AT1G70180.3
AT1G70180.2
AT1G70180.4
AT1G70180.5
AT1G70180.6
AT1G70180
Sterile alpha motif (SAM) domain-containing protein
arTal_v1_Chr1_-_1433010_1433010 1.57 AT1G05010.1
EFE
ethylene-forming enzyme
arTal_v1_Chr1_+_25752624_25752735 1.39 AT1G68580.3
AT1G68580.4
AT1G68580.2
AT1G68580.5
AT1G68580.1
AT1G68580
Agenet and bromo-adjacent homology (BAH) domain-containing protein
arTal_v1_Chr1_-_19956915_19956915 1.31 AT1G53460.1
AT1G53460
craniofacial development protein
arTal_v1_Chr1_-_4766852_4766852 1.23 AT1G13940.1
AT1G13940.2
AT1G13940
T-box transcription factor, putative (DUF863)
arTal_v1_Chr2_+_7568018_7568018 1.21 AT2G17430.1
MLO7
Seven transmembrane MLO family protein
arTal_v1_Chr1_-_5614020_5614020 1.18 AT1G16420.1
MC8
metacaspase 8
arTal_v1_Chr3_-_19566492_19566492 1.16 AT3G52790.1
AT3G52790
peptidoglycan-binding LysM domain-containing protein
arTal_v1_Chr5_+_4904873_4904873 1.15 AT5G15130.2
WRKY72
WRKY DNA-binding protein 72
arTal_v1_Chr2_+_15645407_15645491 1.12 AT2G37260.2
AT2G37260.3
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr2_+_19245591_19245684 1.10 AT2G46830.1
AT2G46830.2
CCA1
circadian clock associated 1
arTal_v1_Chr2_+_19246681_19246681 1.08 AT2G46830.3
CCA1
circadian clock associated 1
arTal_v1_Chr1_+_21316730_21316747 1.07 AT1G57560.2
AT1G57560.1
MYB50
myb domain protein 50
arTal_v1_Chr4_+_9205080_9205080 1.04 AT4G16270.1
AT4G16270
peroxidase superfamily protein
arTal_v1_Chr2_+_7558916_7558977 1.00 AT2G17410.1
AT2G17410.2
AT2G17410
ARID/BRIGHT DNA-binding domain-containing protein
arTal_v1_Chr2_-_8292498_8292498 0.98 AT2G19120.1
AT2G19120
P-loop containing nucleoside triphosphate hydrolases superfamily protein
arTal_v1_Chr5_-_3140347_3140347 0.95 AT5G10030.4
AT5G10030.3
TGA4
TGACG motif-binding factor 4
arTal_v1_Chr5_+_16677827_16677827 0.94 AT5G41710.1
AT5G41710

arTal_v1_Chr2_-_799442_799591 0.86 AT2G02800.2
AT2G02800.1
APK2B
protein kinase 2B
arTal_v1_Chr2_+_7559215_7559215 0.83 AT2G17410.3
AT2G17410
ARID/BRIGHT DNA-binding domain-containing protein
arTal_v1_Chr5_+_4904290_4904290 0.81 AT5G15130.1
WRKY72
WRKY DNA-binding protein 72
arTal_v1_Chr1_+_3777236_3777236 0.76 AT1G11260.1
STP1
sugar transporter 1
arTal_v1_Chr2_+_19336653_19336695 0.72 AT2G47070.1
AT2G47070.2
SPL1
squamosa promoter binding protein-like 1
arTal_v1_Chr2_+_15644811_15644811 0.62 AT2G37260.1
TTG2
WRKY family transcription factor family protein
arTal_v1_Chr5_-_3139624_3139624 0.53 AT5G10030.5
TGA4
TGACG motif-binding factor 4
arTal_v1_Chr3_+_19168672_19168672 0.47 AT3G51670.1
AT3G51670
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
arTal_v1_Chr1_-_7083910_7083910 0.34 AT1G20430.1
AT1G20430
hypothetical protein
arTal_v1_Chr2_+_8527175_8527175 0.26 AT2G19790.1
AT2G19790
SNARE-like superfamily protein
arTal_v1_Chr5_-_1114681_1114681 0.21 AT5G04110.4
AT5G04110.3
GYRB3
DNA GYRASE B3
arTal_v1_Chr3_+_2833346_2833346 0.16 AT3G09230.1
MYB1
myb domain protein 1
arTal_v1_Chr5_-_3140509_3140509 0.11 AT5G10030.1
TGA4
TGACG motif-binding factor 4
arTal_v1_Chr5_-_1115007_1115007 0.11 AT5G04110.2
AT5G04110.1
GYRB3
DNA GYRASE B3
arTal_v1_Chr1_-_19954267_19954325 0.01 AT1G53450.1
AT1G53450.3
AT1G53450.2
AT1G53450
epstein-barr nuclear antigen

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G47270

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
6.5 19.5 GO:0002215 defense response to nematode(GO:0002215)
4.7 14.1 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
3.7 14.9 GO:0033306 phytol metabolic process(GO:0033306)
3.6 10.9 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
2.1 6.4 GO:0044236 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
2.0 6.1 GO:0080040 positive regulation of cellular response to phosphate starvation(GO:0080040)
1.4 7.2 GO:0015824 proline transport(GO:0015824)
1.2 14.4 GO:0015749 monosaccharide transport(GO:0015749)
1.1 9.9 GO:0010230 alternative respiration(GO:0010230)
0.6 9.4 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.5 2.1 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.5 3.0 GO:0072334 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.5 6.7 GO:0048766 root hair initiation(GO:0048766)
0.4 7.6 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.4 1.2 GO:0010483 pollen tube reception(GO:0010483) intraspecies interaction between organisms(GO:0051703)
0.4 2.2 GO:0042754 negative regulation of circadian rhythm(GO:0042754)
0.3 4.9 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.3 5.2 GO:0071450 removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451)
0.3 1.6 GO:0070542 response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398)
0.2 2.5 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.2 1.2 GO:0097468 cell death in response to oxidative stress(GO:0036473) programmed cell death in response to reactive oxygen species(GO:0097468)
0.2 10.0 GO:0010286 heat acclimation(GO:0010286)
0.2 6.5 GO:0006995 cellular response to nitrogen starvation(GO:0006995)
0.2 1.7 GO:0009957 epidermal cell fate specification(GO:0009957)
0.2 2.4 GO:0006893 Golgi to plasma membrane transport(GO:0006893)
0.2 3.7 GO:0048768 root hair cell tip growth(GO:0048768)
0.1 5.0 GO:0009960 endosperm development(GO:0009960)
0.1 6.0 GO:0048544 recognition of pollen(GO:0048544)
0.1 4.0 GO:0051170 nuclear import(GO:0051170)
0.1 6.4 GO:0043086 negative regulation of catalytic activity(GO:0043086)
0.1 3.4 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.1 2.6 GO:0009788 negative regulation of abscisic acid-activated signaling pathway(GO:0009788)
0.1 2.2 GO:0043269 regulation of ion transport(GO:0043269)
0.0 17.9 GO:0006357 regulation of transcription from RNA polymerase II promoter(GO:0006357)
0.0 3.5 GO:0010200 response to chitin(GO:0010200)
0.0 4.2 GO:0009751 response to salicylic acid(GO:0009751)
0.0 0.3 GO:0006265 DNA topological change(GO:0006265)
0.0 2.3 GO:0009909 regulation of flower development(GO:0009909)
0.0 1.1 GO:0010119 regulation of stomatal movement(GO:0010119)
0.0 4.9 GO:0009651 response to salt stress(GO:0009651)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 6.5 GO:0005776 autophagosome(GO:0005776)
0.3 6.4 GO:0031012 extracellular matrix(GO:0031012)
0.2 14.9 GO:0010287 plastoglobule(GO:0010287)
0.2 26.8 GO:0000790 nuclear chromatin(GO:0000790)
0.2 25.3 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.1 3.0 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 5.2 GO:0005759 mitochondrial matrix(GO:0005759)
0.0 7.6 GO:0000325 plant-type vacuole(GO:0000325)
0.0 2.1 GO:0044452 nucleolar part(GO:0044452)
0.0 9.9 GO:0048046 apoplast(GO:0048046)
0.0 17.8 GO:0009506 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 48.8 GO:0005576 extracellular region(GO:0005576)
0.0 4.9 GO:0005730 nucleolus(GO:0005730)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.7 13.6 GO:0005355 glucose transmembrane transporter activity(GO:0005355)
1.2 7.2 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
1.1 14.9 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.9 19.5 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.7 5.2 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.6 3.0 GO:0005460 UDP-glucose transmembrane transporter activity(GO:0005460)
0.5 10.9 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.5 3.7 GO:0043995 histone acetyltransferase activity (H4-K5 specific)(GO:0043995)
0.4 6.7 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.4 2.2 GO:0019904 protein domain specific binding(GO:0019904)
0.3 2.1 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.3 2.5 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.2 5.5 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.2 4.2 GO:0031386 protein tag(GO:0031386)
0.2 22.5 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.2 2.3 GO:0030674 protein binding, bridging(GO:0030674)
0.1 6.4 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.1 1.6 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 4.0 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.1 5.0 GO:0061631 ubiquitin conjugating enzyme activity(GO:0061631)
0.1 2.4 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.1 3.4 GO:0033293 monocarboxylic acid binding(GO:0033293)
0.1 0.8 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.1 7.3 GO:0005216 ion channel activity(GO:0005216)
0.0 6.4 GO:0004857 enzyme inhibitor activity(GO:0004857)
0.0 3.1 GO:0003724 RNA helicase activity(GO:0003724)
0.0 5.8 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity(GO:0008757)
0.0 6.0 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.3 GO:0061505 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.0 2.6 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 30.0 GO:0003700 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.0 2.9 GO:0061630 ubiquitin protein ligase activity(GO:0061630)
0.0 1.2 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 2.2 GO:0005509 calcium ion binding(GO:0005509)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 4.9 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.6 4.0 PID MTOR 4PATHWAY mTOR signaling pathway