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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT3G18990
Z-value: 1.60
Transcription factors associated with AT3G18990
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G18990
|
AT3G18990 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VRN1 | arTal_v1_Chr3_-_6552034_6552055 | 0.81 | 2.1e-07 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_20769324_20769410 Show fit | 6.70 |
AT3G55970.2
AT3G55970.1 |
jasmonate-regulated gene 21 |
|
| arTal_v1_Chr1_-_27548282_27548282 Show fit | 6.52 |
AT1G73260.1
|
kunitz trypsin inhibitor 1 |
|
| arTal_v1_Chr2_+_12600914_12601033 Show fit | 6.04 |
AT2G29350.2
AT2G29350.1 AT2G29350.3 |
senescence-associated gene 13 |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 5.81 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr3_-_2849686_2849686 Show fit | 5.67 |
AT3G09270.1
|
glutathione S-transferase TAU 8 |
|
| arTal_v1_Chr4_+_1464467_1464467 Show fit | 5.58 |
AT4G03320.1
|
translocon at the inner envelope membrane of chloroplasts 20-IV |
|
| arTal_v1_Chr1_-_24433165_24433165 Show fit | 5.55 |
AT1G65690.1
|
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
|
| arTal_v1_Chr2_+_19375985_19375985 Show fit | 5.42 |
AT2G47190.1
|
myb domain protein 2 |
|
| arTal_v1_Chr1_-_10356482_10356482 Show fit | 5.18 |
AT1G29640.1
|
senescence regulator (Protein of unknown function, DUF584) |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 5.17 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G18990
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.0 | GO:0007568 | aging(GO:0007568) |
| 0.1 | 14.1 | GO:0009414 | response to water deprivation(GO:0009414) |
| 2.3 | 13.6 | GO:0051176 | positive regulation of sulfur metabolic process(GO:0051176) |
| 0.3 | 13.3 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.1 | 13.3 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 12.2 | GO:0042594 | response to starvation(GO:0042594) |
| 0.7 | 12.1 | GO:0009065 | glutamine family amino acid catabolic process(GO:0009065) |
| 0.7 | 10.5 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.3 | 10.3 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 10.3 | GO:0016579 | protein deubiquitination(GO:0016579) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 36.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 26.6 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 23.5 | GO:0005774 | vacuolar membrane(GO:0005774) |
| 0.3 | 16.1 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 9.8 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
| 0.1 | 8.9 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 8.7 | GO:0005615 | extracellular space(GO:0005615) |
| 0.2 | 7.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 7.0 | GO:0005768 | endosome(GO:0005768) |
| 0.3 | 6.5 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 33.8 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.2 | 18.7 | GO:0051213 | dioxygenase activity(GO:0051213) |
| 0.0 | 17.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.2 | 11.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.1 | 10.7 | GO:0005525 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 0.4 | 9.8 | GO:0004568 | chitinase activity(GO:0004568) |
| 3.0 | 9.0 | GO:0052626 | 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628) |
| 0.4 | 8.8 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.1 | 8.5 | GO:0005543 | phospholipid binding(GO:0005543) |
| 0.9 | 8.1 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.5 | 2.5 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.4 | 2.3 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.3 | 1.5 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.5 | 1.4 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 1.3 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.3 | 1.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.4 | 0.7 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
| 0.2 | 0.7 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.6 | 1.9 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.3 | 1.9 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.1 | 1.9 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
| 0.3 | 1.8 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.2 | 1.6 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.2 | 1.5 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.4 | 1.3 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.3 | 1.3 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.4 | 1.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |