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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT4G01500
Z-value: 1.99
Transcription factors associated with AT4G01500
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G01500
|
AT4G01500 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NGA4 | arTal_v1_Chr4_+_639247_639247 | 0.45 | 1.6e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_8392825_8392825 Show fit | 10.08 |
AT4G14630.1
|
germin-like protein 9 |
|
| arTal_v1_Chr2_+_7606728_7606905 Show fit | 8.25 |
AT2G17500.2
AT2G17500.1 AT2G17500.3 AT2G17500.4 |
Auxin efflux carrier family protein |
|
| arTal_v1_Chr5_+_20455317_20455317 Show fit | 6.48 |
AT5G50260.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr3_+_19086344_19086452 Show fit | 6.14 |
AT3G51430.1
AT3G51430.2 |
Calcium-dependent phosphotriesterase superfamily protein |
|
| arTal_v1_Chr1_+_3288087_3288087 Show fit | 5.94 |
AT1G10070.3
AT1G10070.2 AT1G10070.1 |
branched-chain amino acid transaminase 2 |
|
| arTal_v1_Chr1_-_5338326_5338326 Show fit | 5.75 |
AT1G15520.1
AT1G15520.2 |
pleiotropic drug resistance 12 |
|
| arTal_v1_Chr3_-_19699392_19699392 Show fit | 5.63 |
AT3G53150.1
|
UDP-glucosyl transferase 73D1 |
|
| arTal_v1_Chr1_+_4567935_4567935 Show fit | 5.52 |
AT1G13330.1
|
Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) |
|
| arTal_v1_Chr2_+_17850292_17850292 Show fit | 5.49 |
AT2G42890.2
|
MEI2-like 2 |
|
| arTal_v1_Chr3_-_1660380_1660429 Show fit | 5.45 |
AT3G05675.3
AT3G05675.2 AT3G05675.1 |
BTB/POZ domain-containing protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G01500
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 16.3 | GO:0045836 | positive regulation of meiotic nuclear division(GO:0045836) |
| 1.0 | 13.7 | GO:0001676 | long-chain fatty acid metabolic process(GO:0001676) |
| 0.3 | 12.9 | GO:0000723 | telomere maintenance(GO:0000723) telomere organization(GO:0032200) |
| 0.2 | 11.3 | GO:0048278 | vesicle docking(GO:0048278) |
| 0.2 | 10.9 | GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146) |
| 1.3 | 10.1 | GO:0051646 | mitochondrion localization(GO:0051646) |
| 0.1 | 10.1 | GO:0006470 | protein dephosphorylation(GO:0006470) |
| 1.3 | 9.3 | GO:0090059 | protoxylem development(GO:0090059) |
| 0.0 | 8.7 | GO:0051603 | proteolysis involved in cellular protein catabolic process(GO:0051603) |
| 0.6 | 8.2 | GO:0042374 | phylloquinone biosynthetic process(GO:0042372) phylloquinone metabolic process(GO:0042374) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 38.9 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.3 | 17.0 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.2 | 16.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.2 | 13.7 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.5 | 12.5 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.1 | 10.0 | GO:0033643 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.3 | 7.2 | GO:0031307 | intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307) |
| 0.2 | 7.2 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
| 0.1 | 7.2 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.5 | 7.1 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 13.1 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.6 | 11.7 | GO:0015248 | sterol transporter activity(GO:0015248) |
| 0.1 | 11.7 | GO:0032561 | GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561) |
| 1.0 | 10.9 | GO:0003691 | double-stranded telomeric DNA binding(GO:0003691) |
| 0.1 | 10.5 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.8 | 10.1 | GO:0050373 | UDP-arabinose 4-epimerase activity(GO:0050373) |
| 2.3 | 9.3 | GO:0052596 | tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596) |
| 0.0 | 8.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.1 | 8.6 | GO:0051015 | actin filament binding(GO:0051015) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.2 | 1.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.9 | PID ATR PATHWAY | ATR signaling pathway |
| 0.3 | 0.8 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.3 | PID SHP2 PATHWAY | SHP2 signaling |
| 0.0 | 0.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 9.1 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.2 | 4.1 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.6 | 2.9 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.4 | 2.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 2.1 | REACTOME RNA POL II PRE TRANSCRIPTION EVENTS | Genes involved in RNA Polymerase II Pre-transcription Events |
| 0.6 | 1.9 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.3 | 1.4 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.4 | 1.1 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 1.0 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |