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GSE43616: Time-course of wild-type Arabidopsis leaf

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Results for AT4G23810

Z-value: 1.04

Transcription factors associated with AT4G23810

Gene Symbol Gene ID Gene Info
AT4G23810
AT4G23810 WRKY family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
WRKY53arTal_v1_Chr4_-_12393982_123939820.442.0e-02Click!

Activity profile of AT4G23810 motif

Sorted Z-values of AT4G23810 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
arTal_v1_Chr5_+_18613239_18613239 16.09 AT5G45890.1
SAG12
senescence-associated gene 12
arTal_v1_Chr2_-_19166949_19166967 7.43 AT2G46680.2
AT2G46680.1
HB-7
homeobox 7
arTal_v1_Chr1_-_23019494_23019494 5.75 AT1G62300.1
WRKY6
WRKY family transcription factor
arTal_v1_Chr3_+_25355_25507 5.39 AT3G01080.2
AT3G01080.3
AT3G01080.1
WRKY58
WRKY DNA-binding protein 58
arTal_v1_Chr4_+_13236253_13236253 4.69 AT4G26120.2
AT4G26120
Ankyrin repeat family protein / BTB/POZ domain-containing protein
arTal_v1_Chr4_+_13236448_13236448 4.64 AT4G26120.1
AT4G26120
Ankyrin repeat family protein / BTB/POZ domain-containing protein
arTal_v1_Chr4_+_15383633_15383633 4.24 AT4G31800.2
WRKY18
WRKY DNA-binding protein 18
arTal_v1_Chr4_+_15383197_15383197 4.13 AT4G31800.3
WRKY18
WRKY DNA-binding protein 18
arTal_v1_Chr3_-_2890520_2890574 4.12 AT3G09390.2
AT3G09390.1
MT2A
metallothionein 2A
arTal_v1_Chr4_+_15382777_15382777 3.99 AT4G31800.1
WRKY18
WRKY DNA-binding protein 18
arTal_v1_Chr2_-_8329944_8329944 3.94 AT2G19190.1
FRK1
FLG22-induced receptor-like kinase 1
arTal_v1_Chr2_+_19000180_19000191 3.88 AT2G46270.2
AT2G46270.1
AT2G46270.4
AT2G46270.3
GBF3
G-box binding factor 3
arTal_v1_Chr4_+_13210230_13210230 3.37 AT4G26050.1
PIRL8
plant intracellular ras group-related LRR 8
arTal_v1_Chr3_+_8295617_8295617 3.31 AT3G23240.1
ERF1
ethylene response factor 1
arTal_v1_Chr1_-_10801093_10801093 2.84 AT1G30490.1
PHV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
arTal_v1_Chr1_+_141870_141870 2.49 AT1G01360.1
RCAR1
regulatory component of ABA receptor 1
arTal_v1_Chr3_+_8309209_8309210 2.47 AT3G23250.1
AT3G23250.2
MYB15
myb domain protein 15
arTal_v1_Chr3_+_4184569_4184569 2.35 AT3G13062.3
AT3G13062.2
AT3G13062
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr3_+_4184340_4184340 2.30 AT3G13062.1
AT3G13062
Polyketide cyclase/dehydrase and lipid transport superfamily protein
arTal_v1_Chr5_-_17331646_17331646 2.27 AT5G43170.1
ZF3
zinc-finger protein 3
arTal_v1_Chr1_+_7146636_7146636 1.99 AT1G20630.1
CAT1
catalase 1
arTal_v1_Chr1_+_7142972_7143133 1.80 AT1G20620.1
AT1G20620.5
AT1G20620.2
AT1G20620.4
AT1G20620.6
CAT3
catalase 3
arTal_v1_Chr1_+_7143805_7143805 1.76 AT1G20620.7
CAT3
catalase 3
arTal_v1_Chr3_+_19648880_19648880 1.54 AT3G52990.2
AT3G52990
Pyruvate kinase family protein
arTal_v1_Chr3_+_19648711_19648711 1.54 AT3G52990.1
AT3G52990
Pyruvate kinase family protein
arTal_v1_Chr4_-_15934762_15934762 1.51 AT4G33020.2
ZIP9
ZIP metal ion transporter family
arTal_v1_Chr4_-_15934313_15934313 1.47 AT4G33020.1
ZIP9
ZIP metal ion transporter family
arTal_v1_Chr5_+_4828499_4828641 1.42 AT5G14930.2
AT5G14930.3
AT5G14930.1
SAG101
senescence-associated gene 101
arTal_v1_Chr5_-_878549_878549 1.32 AT5G03500.1
AT5G03500.5
AT5G03500.4
AT5G03500.2
AT5G03500
Mediator complex, subunit Med7
arTal_v1_Chr5_-_5592332_5592534 1.30 AT5G17010.2
AT5G17010.1
AT5G17010.4
AT5G17010.3
AT5G17010
Major facilitator superfamily protein
arTal_v1_Chr4_-_13016235_13016235 1.24 AT4G25470.1
CBF2
C-repeat/DRE binding factor 2
arTal_v1_Chr1_+_16616988_16616988 1.24 AT1G43850.1
AT1G43850.2
SEU
SEUSS transcriptional co-regulator
arTal_v1_Chr5_-_352095_352095 1.06 AT5G01900.1
WRKY62
WRKY DNA-binding protein 62
arTal_v1_Chr4_-_9335968_9336072 1.05 AT4G16566.1
AT4G16566.2
AT4G16566.3
HINT4
histidine triad nucleotide-binding 4
arTal_v1_Chr4_+_2218042_2218081 1.03 AT4G04450.1
AT4G04450.2
WRKY42
WRKY family transcription factor
arTal_v1_Chr5_-_878364_878375 1.02 AT5G03500.3
AT5G03500.6
AT5G03500
Mediator complex, subunit Med7
arTal_v1_Chr3_+_1871558_1871577 0.70 AT3G06180.2
AT3G06180.1
AT3G06180
Ribosomal protein L34e superfamily protein
arTal_v1_Chr2_+_85401_85416 0.70 AT2G01120.1
AT2G01120.2
ORC4
origin recognition complex subunit 4
arTal_v1_Chr5_-_878116_878116 0.50 AT5G03500.7
AT5G03500
Mediator complex, subunit Med7
arTal_v1_Chr3_+_11648291_11648291 0.43 AT3G29770.2
MES11
methyl esterase 11
arTal_v1_Chr3_+_11648096_11648096 0.40 AT3G29770.1
MES11
methyl esterase 11
arTal_v1_Chr3_+_3304225_3304268 0.13 AT3G10572.1
AT3G10572.2
APEM9
3-phosphoinositide-dependent protein kinase-1
arTal_v1_Chr3_+_3304965_3304965 0.02 AT3G10572.3
APEM9
3-phosphoinositide-dependent protein kinase-1
arTal_v1_Chr3_+_15015086_15015086 0.00 AT3G42950.1
AT3G42950
Pectin lyase-like superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G23810

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.3 16.1 GO:0080187 floral organ senescence(GO:0080187)
1.4 5.7 GO:0080029 cellular response to boron-containing substance levels(GO:0080029)
1.4 13.8 GO:0050691 regulation of defense response to virus by host(GO:0050691)
1.2 3.6 GO:0018119 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.6 3.9 GO:0006000 fructose metabolic process(GO:0006000)
0.5 7.4 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.5 2.8 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.4 1.2 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.4 4.1 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.2 9.3 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.2 2.5 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.1 2.0 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 3.0 GO:0010043 response to zinc ion(GO:0010043)
0.0 3.1 GO:0009135 glycolytic process(GO:0006096) ATP generation from ADP(GO:0006757) purine nucleoside diphosphate metabolic process(GO:0009135) purine ribonucleoside diphosphate metabolic process(GO:0009179) ADP metabolic process(GO:0046031)
0.0 3.3 GO:0009867 jasmonic acid mediated signaling pathway(GO:0009867)
0.0 2.3 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 1.1 GO:0009863 salicylic acid mediated signaling pathway(GO:0009863)
0.0 5.4 GO:0031347 regulation of defense response(GO:0031347)
0.0 0.7 GO:0006270 DNA replication initiation(GO:0006270)
0.0 0.1 GO:0015919 peroxisomal membrane transport(GO:0015919)
0.0 1.2 GO:0009631 cold acclimation(GO:0009631)
0.0 0.8 GO:0009696 salicylic acid metabolic process(GO:0009696)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 16.1 GO:0005764 lysosome(GO:0005764)
0.1 0.7 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 3.6 GO:0005635 nuclear envelope(GO:0005635)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.6 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.4 3.9 GO:0008865 fructokinase activity(GO:0008865)
0.3 1.3 GO:0005353 fructose transmembrane transporter activity(GO:0005353)
0.2 16.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.2 1.2 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.2 3.1 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.2 1.0 GO:0004779 sulfate adenylyltransferase activity(GO:0004779) hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.1 2.5 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.1 14.9 GO:0008289 lipid binding(GO:0008289)
0.1 2.2 GO:0080030 methyl indole-3-acetate esterase activity(GO:0080030)
0.0 1.3 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.7 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 12.4 GO:0042802 identical protein binding(GO:0042802)
0.0 4.1 GO:0005507 copper ion binding(GO:0005507)
0.0 17.9 GO:0003700 nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 4.1 PID AP1 PATHWAY AP-1 transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 4.1 REACTOME INTERFERON SIGNALING Genes involved in Interferon Signaling
0.1 0.7 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation