Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G08330
Z-value: 0.54
Transcription factors associated with AT5G08330
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G08330
|
AT5G08330 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP11 | arTal_v1_Chr5_+_2680401_2680401 | 0.23 | 2.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 1.34 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_21523375_21523518 Show fit | 0.79 |
AT3G58120.2
AT3G58120.1 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr4_+_12660687_12660687 Show fit | 0.78 |
AT4G24510.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 0.76 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr5_-_1293723_1293723 Show fit | 0.73 |
AT5G04530.1
|
3-ketoacyl-CoA synthase 19 |
|
| arTal_v1_Chr1_+_10371675_10371675 Show fit | 0.71 |
AT1G29660.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 0.71 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr3_-_3027961_3027961 Show fit | 0.67 |
AT3G09870.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_+_10375754_10375754 Show fit | 0.67 |
AT1G29670.1
|
GDSL-like Lipase/Acylhydrolase superfamily protein |
|
| arTal_v1_Chr5_+_625254_625254 Show fit | 0.66 |
AT5G02760.1
|
Protein phosphatase 2C family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G08330
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 1.9 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 1.6 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.0 | 1.4 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.3 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.0 | 1.3 | GO:0009958 | positive gravitropism(GO:0009958) |
| 0.2 | 1.1 | GO:0010450 | inflorescence meristem growth(GO:0010450) |
| 0.0 | 1.0 | GO:0009913 | epidermis development(GO:0008544) epidermal cell differentiation(GO:0009913) epithelial cell differentiation(GO:0030855) |
| 0.2 | 0.9 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.1 | 0.9 | GO:0032544 | plastid translation(GO:0032544) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.4 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 1.7 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.1 | 0.8 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 0.7 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.1 | 0.6 | GO:0042555 | MCM complex(GO:0042555) |
| 0.1 | 0.6 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.0 | 0.6 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 0.5 | GO:0009508 | plastid chromosome(GO:0009508) |
| 0.0 | 0.5 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 1.6 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.0 | 1.4 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.4 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 1.2 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.1 | 1.1 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.3 | 0.9 | GO:0009924 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.1 | 0.8 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 0.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 0.8 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.1 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
| 0.0 | 0.1 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.0 | 0.7 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.6 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.1 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.0 | 0.1 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.1 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
| 0.0 | 0.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |