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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G09410
Z-value: 5.29
Transcription factors associated with AT5G09410
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G09410
|
AT5G09410 | ethylene induced calmodulin binding protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| EICBP.B | arTal_v1_Chr5_+_2922332_2922332 | 0.87 | 2.0e-09 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_25765718_25765718 Show fit | 22.52 |
AT1G68620.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 21.99 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr3_+_5234457_5234457 Show fit | 21.37 |
AT3G15500.1
|
NAC domain containing protein 3 |
|
| arTal_v1_Chr1_-_1559917_1559917 Show fit | 20.96 |
AT1G05340.1
|
cysteine-rich TM module stress tolerance protein |
|
| arTal_v1_Chr4_+_285876_285876 Show fit | 20.49 |
AT4G00700.2
AT4G00700.1 |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
|
| arTal_v1_Chr3_-_16923299_16923299 Show fit | 19.28 |
AT3G46080.1
|
C2H2-type zinc finger family protein |
|
| arTal_v1_Chr5_-_4183354_4183354 Show fit | 18.95 |
AT5G13170.1
|
senescence-associated gene 29 |
|
| arTal_v1_Chr2_-_18646606_18646606 Show fit | 18.80 |
AT2G45220.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_-_6042938_6043014 Show fit | 18.66 |
AT5G18270.2
AT5G18270.1 |
NAC domain containing protein 87 |
|
| arTal_v1_Chr2_+_15830870_15830870 Show fit | 18.21 |
AT2G37750.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G09410
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 189.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 113.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.9 | 45.7 | GO:0009788 | negative regulation of abscisic acid-activated signaling pathway(GO:0009788) |
| 0.5 | 44.3 | GO:0009615 | response to virus(GO:0009615) |
| 2.0 | 43.1 | GO:0009065 | glutamine family amino acid catabolic process(GO:0009065) |
| 0.8 | 32.0 | GO:0032200 | telomere maintenance(GO:0000723) telomere organization(GO:0032200) |
| 0.6 | 27.3 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.1 | 26.4 | GO:0006886 | intracellular protein transport(GO:0006886) |
| 1.9 | 24.4 | GO:0005987 | sucrose catabolic process(GO:0005987) |
| 7.8 | 23.5 | GO:0032963 | collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 479.4 | GO:0005634 | nucleus(GO:0005634) |
| 0.1 | 106.3 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 2.3 | 34.7 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.7 | 31.3 | GO:0005764 | lysosome(GO:0005764) |
| 1.1 | 28.1 | GO:0000781 | chromosome, telomeric region(GO:0000781) |
| 0.8 | 27.2 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 1.2 | 25.7 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.4 | 24.6 | GO:0000139 | Golgi membrane(GO:0000139) |
| 1.0 | 18.7 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 2.0 | 18.4 | GO:0000813 | ESCRT I complex(GO:0000813) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 133.2 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.6 | 73.3 | GO:0019900 | kinase binding(GO:0019900) |
| 0.5 | 57.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.5 | 37.3 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.5 | 36.9 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
| 3.9 | 34.7 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.6 | 33.9 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 0.2 | 32.2 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.1 | 31.0 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 3.0 | 30.0 | GO:0004351 | glutamate decarboxylase activity(GO:0004351) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 9.2 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 1.8 | 8.9 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.8 | 4.0 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.9 | 2.8 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 2.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.4 | 2.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.3 | 1.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.3 | 9.2 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 1.0 | 8.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 2.0 | 5.9 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |
| 0.8 | 2.4 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.6 | 2.3 | REACTOME INTERFERON SIGNALING | Genes involved in Interferon Signaling |
| 0.6 | 2.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.6 | 1.7 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.2 | 1.7 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.4 | 1.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.3 | 1.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |