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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G41315
Z-value: 0.51
Transcription factors associated with AT5G41315
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G41315
|
AT5G41315 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GL3 | arTal_v1_Chr5_+_16529090_16529090 | -0.63 | 3.1e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.47 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.44 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 2.41 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.35 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_8863224_8863224 Show fit | 2.03 |
AT5G25460.1
|
transmembrane protein, putative (Protein of unknown function, DUF642) |
|
| arTal_v1_Chr5_-_7738535_7738535 Show fit | 1.68 |
AT5G23060.2
AT5G23060.1 |
calcium sensing receptor |
|
| arTal_v1_Chr5_-_25373904_25373904 Show fit | 1.63 |
AT5G63310.1
|
nucleoside diphosphate kinase 2 |
|
| arTal_v1_Chr1_-_28419635_28419635 Show fit | 1.63 |
AT1G75680.1
|
glycosyl hydrolase 9B7 |
|
| arTal_v1_Chr3_-_5469594_5469594 Show fit | 1.56 |
AT3G16140.1
|
photosystem I subunit H-1 |
|
| arTal_v1_Chr1_+_13208683_13208683 Show fit | 1.54 |
AT1G35680.1
|
Ribosomal protein L21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G41315
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 9.7 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 2.9 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.1 | 2.0 | GO:0006547 | histidine biosynthetic process(GO:0000105) histidine metabolic process(GO:0006547) imidazole-containing compound metabolic process(GO:0052803) |
| 0.0 | 1.9 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 1.8 | GO:0042335 | cuticle development(GO:0042335) |
| 0.3 | 1.7 | GO:0071277 | cellular response to calcium ion(GO:0071277) |
| 0.3 | 1.6 | GO:0046051 | UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051) |
| 0.1 | 1.4 | GO:0010020 | chloroplast fission(GO:0010020) plastid fission(GO:0043572) |
| 0.0 | 1.4 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.3 | 1.3 | GO:0010480 | microsporocyte differentiation(GO:0010480) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 10.2 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 8.1 | GO:0009532 | plastid stroma(GO:0009532) |
| 0.0 | 5.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.0 | 4.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 2.9 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.0 | 2.6 | GO:0042170 | plastid membrane(GO:0042170) |
| 0.0 | 2.0 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.9 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 1.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.2 | 1.2 | GO:0005854 | nascent polypeptide-associated complex(GO:0005854) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 9.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 2.9 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.0 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
| 0.1 | 1.8 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 1.7 | GO:0047938 | glucose-6-phosphate 1-epimerase activity(GO:0047938) |
| 0.2 | 1.6 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
| 0.1 | 1.6 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.1 | 1.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 1.5 | GO:0043621 | protein self-association(GO:0043621) |
| 0.4 | 1.4 | GO:0004400 | histidinol-phosphate transaminase activity(GO:0004400) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 9.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.1 | 0.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.0 | 0.1 | ST GRANULE CELL SURVIVAL PATHWAY | Granule Cell Survival Pathway is a specific case of more general PAC1 Receptor Pathway. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 9.7 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.3 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |