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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G52830
Z-value: 0.83
Transcription factors associated with AT5G52830
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G52830
|
AT5G52830 | WRKY DNA-binding protein 27 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY27 | arTal_v1_Chr5_+_21410769_21410769 | -0.76 | 2.8e-06 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 4.31 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr5_-_22560461_22560541 Show fit | 3.30 |
AT5G55730.2
AT5G55730.1 |
FASCICLIN-like arabinogalactan 1 |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 3.10 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr4_-_17606924_17607050 Show fit | 3.02 |
AT4G37450.1
AT4G37450.2 |
arabinogalactan protein 18 |
|
| arTal_v1_Chr1_+_7886323_7886323 Show fit | 2.74 |
AT1G22330.1
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
|
| arTal_v1_Chr1_-_21614169_21614169 Show fit | 2.71 |
AT1G58270.1
|
TRAF-like family protein |
|
| arTal_v1_Chr2_-_15137012_15137012 Show fit | 2.70 |
AT2G36050.1
|
ovate family protein 15 |
|
| arTal_v1_Chr5_+_152446_152446 Show fit | 2.69 |
AT5G01370.1
|
ALC-interacting protein 1 |
|
| arTal_v1_Chr2_-_8971339_8971339 Show fit | 2.68 |
AT2G20835.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_6882235_6882315 Show fit | 2.60 |
AT3G19820.3
AT3G19820.1 AT3G19820.2 |
cell elongation protein / DWARF1 / DIMINUTO (DIM) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G52830
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 8.4 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.3 | 5.2 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501) |
| 0.0 | 4.7 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.3 | 4.6 | GO:0030497 | fatty acid elongation(GO:0030497) |
| 0.3 | 3.7 | GO:0048497 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.2 | 3.7 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.0 | 3.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 3.5 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 3.4 | GO:0009657 | plastid organization(GO:0009657) |
| 0.4 | 3.3 | GO:0080165 | callose deposition in phloem sieve plate(GO:0080165) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 17.5 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 14.5 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.1 | 9.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.4 | 4.4 | GO:0042555 | MCM complex(GO:0042555) |
| 0.1 | 3.8 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 3.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 2.7 | GO:0015934 | large ribosomal subunit(GO:0015934) |
| 0.3 | 2.6 | GO:0009533 | chloroplast stromal thylakoid(GO:0009533) |
| 0.1 | 2.5 | GO:0009574 | preprophase band(GO:0009574) |
| 0.3 | 2.2 | GO:0000798 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.6 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.7 | 8.4 | GO:0047259 | glucomannan 4-beta-mannosyltransferase activity(GO:0047259) |
| 0.7 | 6.6 | GO:0016423 | tRNA (guanine) methyltransferase activity(GO:0016423) |
| 0.3 | 5.6 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.5 | 4.9 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.1 | 4.9 | GO:0016866 | intramolecular transferase activity(GO:0016866) |
| 0.2 | 4.6 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 1.0 | 4.1 | GO:0070330 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330) |
| 0.0 | 4.0 | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors(GO:0016614) |
| 0.1 | 3.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.3 | 2.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.9 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 3.2 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
| 0.2 | 2.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 2.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.2 | 2.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 1.6 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
| 0.3 | 1.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.2 | 0.9 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.9 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.2 | 0.7 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.1 | 0.4 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |