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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G60130
Z-value: 1.69
Transcription factors associated with AT5G60130
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G60130
|
AT5G60130 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G60130 | arTal_v1_Chr5_-_24213386_24213386 | 0.44 | 2.0e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_4312103_4312162 Show fit | 6.49 |
AT2G10940.2
AT2G10940.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_9072708_9072727 Show fit | 5.69 |
AT5G25980.2
AT5G25980.1 AT5G25980.3 |
glucoside glucohydrolase 2 |
|
| arTal_v1_Chr5_-_19648362_19648362 Show fit | 5.34 |
AT5G48490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_+_5505360_5505360 Show fit | 5.19 |
AT3G16240.1
|
delta tonoplast integral protein |
|
| arTal_v1_Chr4_-_18098633_18098633 Show fit | 4.86 |
AT4G38770.1
|
proline-rich protein 4 |
|
| arTal_v1_Chr5_-_9082384_9082384 Show fit | 4.49 |
AT5G26000.1
AT5G26000.2 |
thioglucoside glucohydrolase 1 |
|
| arTal_v1_Chr3_+_10255906_10255941 Show fit | 4.46 |
AT3G27690.2
AT3G27690.1 |
photosystem II light harvesting complex protein 2.3 |
|
| arTal_v1_Chr3_+_5681380_5681380 Show fit | 4.23 |
AT3G16670.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr2_-_16950705_16950705 Show fit | 4.21 |
AT2G40610.1
|
expansin A8 |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 4.12 |
AT1G55330.1
|
arabinogalactan protein 21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G60130
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 26.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 1.3 | 25.5 | GO:0006949 | syncytium formation(GO:0006949) |
| 0.3 | 23.6 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 1.4 | 17.7 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.1 | 16.9 | GO:0015979 | photosynthesis(GO:0015979) |
| 0.5 | 13.3 | GO:0042335 | cuticle development(GO:0042335) |
| 0.2 | 12.2 | GO:0009809 | lignin biosynthetic process(GO:0009809) |
| 0.2 | 12.2 | GO:0009736 | cytokinin-activated signaling pathway(GO:0009736) |
| 0.6 | 10.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 1.7 | 10.0 | GO:0009769 | photosynthesis, light harvesting in photosystem II(GO:0009769) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 123.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.3 | 72.8 | GO:0048046 | apoplast(GO:0048046) |
| 0.2 | 56.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.2 | 55.7 | GO:0009579 | thylakoid(GO:0009579) |
| 0.1 | 51.1 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.2 | 41.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.5 | 34.6 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.7 | 27.5 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 10.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.2 | 10.3 | GO:0005874 | microtubule(GO:0005874) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 30.1 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.8 | 24.7 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.6 | 14.9 | GO:0102336 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.2 | 14.3 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.5 | 14.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.2 | 13.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 13.7 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 13.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.6 | 13.0 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.5 | 12.9 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.0 | 15.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 1.5 | 5.8 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.4 | 4.2 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.6 | 1.8 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.2 | 1.7 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.2 | 1.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.4 | 1.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 1.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.3 | 1.0 | PID ATM PATHWAY | ATM pathway |
| 0.2 | 1.0 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.7 | 22.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 4.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.7 | 2.8 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
| 0.3 | 2.8 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
| 0.2 | 2.6 | REACTOME ORC1 REMOVAL FROM CHROMATIN | Genes involved in Orc1 removal from chromatin |
| 0.4 | 1.8 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 1.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.4 | 1.3 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.2 | 1.1 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.5 | 1.0 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |