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GSE43616: Time-course of wild-type Arabidopsis leaf
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Results for AT5G62470
Z-value: 0.69
Transcription factors associated with AT5G62470
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G62470
|
AT5G62470 | myb domain protein 96 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB96 | arTal_v1_Chr5_-_25081141_25081141 | 0.38 | 4.5e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.56 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr1_-_1349478_1349478 Show fit | 1.33 |
AT1G04800.1
|
glycine-rich protein |
|
| arTal_v1_Chr1_-_22317070_22317070 Show fit | 1.20 |
AT1G60590.1
|
Pectin lyase-like superfamily protein |
|
| arTal_v1_Chr3_-_7796310_7796460 Show fit | 1.19 |
AT3G22120.1
AT3G22120.2 |
cell wall-plasma membrane linker protein |
|
| arTal_v1_Chr1_+_3157501_3157501 Show fit | 1.15 |
AT1G09750.1
|
Eukaryotic aspartyl protease family protein |
|
| arTal_v1_Chr1_+_27452748_27452766 Show fit | 1.14 |
AT1G72970.1
AT1G72970.2 |
Glucose-methanol-choline (GMC) oxidoreductase family protein |
|
| arTal_v1_Chr1_-_575085_575085 Show fit | 1.09 |
AT1G02660.1
|
alpha/beta-Hydrolases superfamily protein |
|
| arTal_v1_Chr2_-_17648945_17649062 Show fit | 1.09 |
AT2G42380.1
AT2G42380.4 AT2G42380.3 AT2G42380.2 AT2G42380.5 |
Basic-leucine zipper (bZIP) transcription factor family protein |
|
| arTal_v1_Chr2_+_8940833_8940833 Show fit | 1.08 |
AT2G20750.2
AT2G20750.1 |
expansin B1 |
|
| arTal_v1_Chr1_-_4026733_4026733 Show fit | 1.07 |
AT1G11925.1
|
Stigma-specific Stig1 family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G62470
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.8 | GO:0043447 | alkane biosynthetic process(GO:0043447) |
| 0.1 | 1.7 | GO:0042335 | cuticle development(GO:0042335) |
| 0.0 | 1.7 | GO:0009744 | response to sucrose(GO:0009744) |
| 0.0 | 1.7 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.2 | 1.6 | GO:0009942 | longitudinal axis specification(GO:0009942) |
| 0.1 | 1.6 | GO:0031540 | regulation of anthocyanin biosynthetic process(GO:0031540) |
| 0.0 | 1.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.0 | 1.5 | GO:0009808 | lignin metabolic process(GO:0009808) |
| 0.2 | 1.2 | GO:0010929 | positive regulation of auxin mediated signaling pathway(GO:0010929) |
| 0.0 | 1.2 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 1.7 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.0 | GO:0090404 | growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404) |
| 0.0 | 0.6 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 0.5 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.0 | 0.5 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 0.4 | GO:0031897 | Tic complex(GO:0031897) |
| 0.0 | 0.4 | GO:0042555 | MCM complex(GO:0042555) |
| 0.0 | 0.4 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.4 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.5 | GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747) |
| 0.1 | 1.7 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.5 | 1.6 | GO:0071771 | octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465) |
| 0.0 | 1.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 1.3 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 1.3 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.0 | 1.2 | GO:0016413 | O-acetyltransferase activity(GO:0016413) |
| 0.0 | 1.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.0 | 1.2 | GO:0038023 | signaling receptor activity(GO:0038023) |
| 0.3 | 1.1 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.6 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |