Project
GSE43616: Time-course of wild-type Arabidopsis leaf
Navigation
Downloads
Results for AT5G65130
Z-value: 0.59
Transcription factors associated with AT5G65130
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT5G65130
|
AT5G65130 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT5G65130 | arTal_v1_Chr5_+_26017185_26017185 | 0.24 | 2.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_19291632_19291632 Show fit | 2.49 |
AT2G46950.2
AT2G46950.1 |
cytochrome P450, family 709, subfamily B, polypeptide 2 |
|
| arTal_v1_Chr4_+_17597110_17597110 Show fit | 2.19 |
AT4G37430.1
|
cytochrome P450, family 91, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr3_+_5471735_5471735 Show fit | 2.16 |
AT3G16150.1
|
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
|
| arTal_v1_Chr4_+_15828228_15828228 Show fit | 2.09 |
AT4G32810.1
AT4G32810.2 |
carotenoid cleavage dioxygenase 8 |
|
| arTal_v1_Chr1_+_1469541_1469541 Show fit | 2.08 |
AT1G05100.1
|
mitogen-activated protein kinase kinase kinase 18 |
|
| arTal_v1_Chr3_-_6258426_6258426 Show fit | 2.03 |
AT3G18250.1
|
Putative membrane lipoprotein |
|
| arTal_v1_Chr1_-_8967562_8967562 Show fit | 1.91 |
AT1G25530.1
|
Transmembrane amino acid transporter family protein |
|
| arTal_v1_Chr2_+_14685170_14685170 Show fit | 1.87 |
AT2G34810.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_-_8471644_8471644 Show fit | 1.76 |
AT2G19570.1
|
cytidine deaminase 1 |
|
| arTal_v1_Chr2_-_10127589_10127589 Show fit | 1.73 |
AT2G23790.1
|
calcium uniporter (DUF607) |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT5G65130
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0006357 | regulation of transcription from RNA polymerase II promoter(GO:0006357) |
| 0.0 | 5.0 | GO:0030163 | protein catabolic process(GO:0030163) |
| 0.1 | 4.1 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.1 | 3.4 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.0 | 3.4 | GO:0071456 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.8 | 3.3 | GO:0016139 | glycoside catabolic process(GO:0016139) |
| 0.0 | 2.5 | GO:0010200 | response to chitin(GO:0010200) |
| 0.4 | 2.3 | GO:0046087 | cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087) |
| 0.2 | 2.3 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.0 | 2.3 | GO:0055046 | microgametogenesis(GO:0055046) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.3 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 2.3 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 2.0 | GO:0018995 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.6 | 1.7 | GO:0034703 | ion channel complex(GO:0034702) cation channel complex(GO:0034703) |
| 0.0 | 1.7 | GO:0009524 | phragmoplast(GO:0009524) |
| 0.1 | 1.6 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 1.6 | GO:1903293 | protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293) |
| 0.2 | 1.5 | GO:0000813 | ESCRT I complex(GO:0000813) |
| 0.0 | 1.1 | GO:0098687 | chromosomal region(GO:0098687) |
| 0.0 | 1.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.1 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 4.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.8 | 3.3 | GO:0046593 | mandelonitrile lyase activity(GO:0046593) |
| 0.0 | 3.3 | GO:0004497 | monooxygenase activity(GO:0004497) |
| 0.0 | 3.2 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
| 0.3 | 2.6 | GO:0010436 | carotenoid dioxygenase activity(GO:0010436) |
| 0.0 | 2.6 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.4 | 2.3 | GO:0004126 | cytidine deaminase activity(GO:0004126) |
| 0.7 | 2.2 | GO:0008798 | beta-aspartyl-peptidase activity(GO:0008798) |
| 0.3 | 2.2 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.1 | 0.6 | PID P73PATHWAY | p73 transcription factor network |
| 0.1 | 0.3 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
| 0.0 | 0.1 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.3 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |
| 0.0 | 0.1 | REACTOME BASE EXCISION REPAIR | Genes involved in Base Excision Repair |