hg38_v1_chr7_-_5970632_5970683	0.296134	BRCA1	ENST00000455618.2|RSPH10B|ENSG00000155026.16|radial spoke head 10 homolog B	ENST00000405415.5|RSPH10B|ENSG00000155026.16|radial spoke head 10 homolog B	ENST00000404406.5|RSPH10B|ENSG00000155026.16|radial spoke head 10 homolog B	ENST00000542644.1|RSPH10B|ENSG00000155026.16|radial spoke head 10 homolog B
hg38_v1_chr20_+_33161768_33161782	0.284065	BRCA1	ENST00000253362.6|BPIFA2|ENSG00000131050.11|BPI fold containing family A member 2
hg38_v1_chr2_+_98087160_98087175	0.274942	BRCA1	ENST00000477737.6|VWA3B|ENSG00000168658.19|von Willebrand factor A domain containing 3B
hg38_v1_chr11_+_101914997_101915036	0.235213	BRCA1	ENST00000263468.13|CEP126|ENSG00000110318.15|centrosomal protein 126
hg38_v1_chr17_-_43942472_43942476	0.234822	BRCA1	ENST00000225992.8|PPY|ENSG00000108849.8|pancreatic polypeptide
hg38_v1_chr1_-_160262522_160262533	0.19276	BRCA1	ENST00000440682.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr3_+_184338826_184338854	0.192061	BRCA1	ENST00000453072.5|FAM131A|ENSG00000175182.15|family with sequence similarity 131 member A
hg38_v1_chr1_-_160262501_160262514	0.190451	BRCA1	ENST00000447377.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr6_+_16129077_16129171	0.187164	BRCA1	ENST00000356840.8|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein	ENST00000349606.4|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein
hg38_v1_chr13_-_51974775_51974775	0.179104	BRCA1	ENST00000674147.1|ATP7B|ENSG00000123191.16|ATPase copper transporting beta
hg38_v1_chr11_-_27700472_27700494	0.159041	BRCA1	ENST00000418212.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor	ENST00000533246.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor
hg38_v1_chr18_-_49557_49557	0.156943	BRCA1	ENST00000308911.8|TUBB8B|ENSG00000173213.9|tubulin beta 8B
hg38_v1_chr11_-_27700447_27700461	0.153299	BRCA1	ENST00000356660.9|BDNF|ENSG00000176697.20|brain derived neurotrophic factor
hg38_v1_chr5_-_124746630_124746673	0.152964	BRCA1	ENST00000513986.2|ZNF608|ENSG00000168916.16|zinc finger protein 608
hg38_v1_chr12_-_122395422_122395436	0.140052	BRCA1	ENST00000540304.6|CLIP1|ENSG00000130779.22|CAP-Gly domain containing linker protein 1
hg38_v1_chr14_+_88385643_88385711	0.136853	BRCA1	ENST00000393545.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000356583.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000555401.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000553885.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7
hg38_v1_chr1_+_171557845_171557955	0.132571	BRCA1	ENST00000644916.1|PRRC2C|ENSG00000117523.17|proline rich coiled-coil 2C
hg38_v1_chr21_+_44646414_44646414	0.12978	BRCA1	ENST00000334670.9|KRTAP10-11|ENSG00000243489.4|keratin associated protein 10-11
hg38_v1_chr1_+_159171607_159171759	0.119777	BRCA1	ENST00000368124.8|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000368125.9|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000416746.1|CADM3|ENSG00000162706.13|cell adhesion molecule 3
hg38_v1_chr14_+_88385714_88385819	0.115383	BRCA1	ENST00000045347.11|SPATA7|ENSG00000042317.17|spermatogenesis associated 7
hg38_v1_chr6_-_158999748_158999839	0.111568	BRCA1	ENST00000449822.5|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr1_-_217076889_217076997	0.108002	BRCA1	ENST00000493748.5|ESRRG|ENSG00000196482.18|estrogen related receptor gamma	ENST00000463665.5|ESRRG|ENSG00000196482.18|estrogen related receptor gamma
hg38_v1_chr5_+_146203544_146203587	0.107129	BRCA1	ENST00000506502.2|ENSG00000275740.1|ENSG00000275740.1|novel readthrough transcript
hg38_v1_chr14_-_59630806_59630820	0.1059	BRCA1	ENST00000342503.8|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr19_-_47555856_47555856	0.105715	BRCA1	ENST00000391901.7|ZNF541|ENSG00000118156.12|zinc finger protein 541	ENST00000314121.8|ZNF541|ENSG00000118156.12|zinc finger protein 541
hg38_v1_chr14_-_59630582_59630685	0.103218	BRCA1	ENST00000395090.5|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr6_-_159000174_159000222	0.102098	BRCA1	ENST00000367069.7|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr2_-_24971900_24971971	0.0992189	BRCA1	ENST00000264711.7|DNAJC27|ENSG00000115137.12|DnaJ heat shock protein family (Hsp40) member C27
hg38_v1_chr14_+_63761836_63761899	0.097647	BRCA1	ENST00000674003.1|SYNE2|ENSG00000054654.19|spectrin repeat containing nuclear envelope protein 2
hg38_v1_chr2_-_24972032_24972094	0.0956057	BRCA1	ENST00000534855.5|DNAJC27|ENSG00000115137.12|DnaJ heat shock protein family (Hsp40) member C27
hg38_v1_chr2_-_151261839_151261870	0.0954399	BRCA1	ENST00000331426.6|RBM43|ENSG00000184898.7|RNA binding motif protein 43
hg38_v1_chr7_+_100119607_100119698	0.0952589	BRCA1	ENST00000262932.5|CNPY4|ENSG00000166997.8|canopy FGF signaling regulator 4
hg38_v1_chr1_-_170074568_170074738	0.091874	BRCA1	ENST00000367767.5|KIFAP3|ENSG00000075945.13|kinesin associated protein 3	ENST00000361580.7|KIFAP3|ENSG00000075945.13|kinesin associated protein 3	ENST00000538366.5|KIFAP3|ENSG00000075945.13|kinesin associated protein 3
hg38_v1_chr6_+_96563117_96563145	0.0807022	BRCA1	ENST00000450218.6|FHL5|ENSG00000112214.11|four and a half LIM domains 5
hg38_v1_chr12_-_116881062_116881117	0.0742944	BRCA1	ENST00000550505.5|HRK|ENSG00000135116.9|harakiri, BCL2 interacting protein
hg38_v1_chr11_+_73308237_73308317	0.0717978	BRCA1	ENST00000263674.4|ARHGEF17|ENSG00000110237.5|Rho guanine nucleotide exchange factor 17
hg38_v1_chr17_-_43661915_43661929	0.0668109	BRCA1	ENST00000318579.9|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1	ENST00000393661.2|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1
hg38_v1_chr5_+_146203593_146203617	0.06656	BRCA1	ENST00000265271.7|RBM27|ENSG00000091009.8|RNA binding motif protein 27
hg38_v1_chr4_+_625555_625617	0.066093	BRCA1	ENST00000496514.6|PDE6B|ENSG00000133256.13|phosphodiesterase 6B	ENST00000255622.10|PDE6B|ENSG00000133256.13|phosphodiesterase 6B
hg38_v1_chrX_-_10833643_10833664	0.0653842	BRCA1	ENST00000380785.5|MID1|ENSG00000101871.16|midline 1	ENST00000380787.5|MID1|ENSG00000101871.16|midline 1
hg38_v1_chr8_-_17002327_17002351	0.0653472	BRCA1	ENST00000180166.6|FGF20|ENSG00000078579.9|fibroblast growth factor 20
hg38_v1_chrX_+_10156960_10156992	0.0635859	BRCA1	ENST00000380833.9|CLCN4|ENSG00000073464.13|chloride voltage-gated channel 4
hg38_v1_chr2_-_179049986_179050157	0.062659	BRCA1	ENST00000409284.1|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141	ENST00000443758.6|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141	ENST00000446116.5|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141
hg38_v1_chr1_-_160262540_160262565	0.0559328	BRCA1	ENST00000368074.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr10_-_73625951_73626016	0.0551486	BRCA1	ENST00000433394.1|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54	ENST00000422491.7|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54
hg38_v1_chr2_-_49973939_49974014	0.0544067	BRCA1	ENST00000630656.1|NRXN1|ENSG00000179915.24|neurexin 1
hg38_v1_chr2_-_157325808_157325905	0.0534166	BRCA1	ENST00000410096.6|ERMN|ENSG00000136541.15|ermin	ENST00000420719.6|ERMN|ENSG00000136541.15|ermin	ENST00000409216.5|ERMN|ENSG00000136541.15|ermin	ENST00000419116.2|ERMN|ENSG00000136541.15|ermin
hg38_v1_chr13_+_29428709_29428726	0.0521781	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.22|microtubule associated scaffold protein 2
hg38_v1_chr1_+_62597510_62597526	0.0519458	BRCA1	ENST00000371129.4|ANGPTL3|ENSG00000132855.5|angiopoietin like 3
hg38_v1_chr5_+_140700437_140700457	0.0511731	BRCA1	ENST00000274712.8|ZMAT2|ENSG00000146007.11|zinc finger matrin-type 2
hg38_v1_chr1_-_160262407_160262494	0.0509294	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000610139.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000475733.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000407642.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000368073.7|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000326837.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr7_-_78771108_78771148	0.0502909	BRCA1	ENST00000626691.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr13_-_99258366_99258406	0.0502617	BRCA1	ENST00000397470.5|GPR18|ENSG00000125245.14|G protein-coupled receptor 18	ENST00000397473.7|GPR18|ENSG00000125245.14|G protein-coupled receptor 18
hg38_v1_chr12_+_401621_401669	0.0496004	BRCA1	ENST00000412006.6|CCDC77|ENSG00000120647.10|coiled-coil domain containing 77	ENST00000239830.9|CCDC77|ENSG00000120647.10|coiled-coil domain containing 77
hg38_v1_chr14_+_31561376_31561455	0.0472142	BRCA1	ENST00000550649.5|NUBPL|ENSG00000151413.17|nucleotide binding protein like	ENST00000281081.12|NUBPL|ENSG00000151413.17|nucleotide binding protein like
hg38_v1_chr9_-_21031614_21031653	0.0433553	BRCA1	ENST00000495827.3|HACD4|ENSG00000188921.14|3-hydroxyacyl-CoA dehydratase 4
hg38_v1_chr10_+_91923762_91923837	0.0430097	BRCA1	ENST00000265990.11|BTAF1|ENSG00000095564.14|B-TFIID TATA-box binding protein associated factor 1
hg38_v1_chr10_-_49269_49296	0.040745	BRCA1	ENST00000562809.1|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000568866.5|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000561967.1|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000568584.6|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII
hg38_v1_chr7_-_78771265_78771344	0.0372477	BRCA1	ENST00000630991.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2	ENST00000629359.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr10_-_24706622_24706653	0.0360346	BRCA1	ENST00000680286.1|ARHGAP21|ENSG00000107863.19|Rho GTPase activating protein 21
hg38_v1_chr6_+_33204645_33204700	0.032791	BRCA1	ENST00000374662.4|HSD17B8|ENSG00000204228.4|hydroxysteroid 17-beta dehydrogenase 8
hg38_v1_chr3_-_142448060_142448074	0.0324616	BRCA1	ENST00000264951.8|XRN1|ENSG00000114127.11|5'-3' exoribonuclease 1
hg38_v1_chr13_-_49444004_49444076	0.0286496	BRCA1	ENST00000410043.5|CAB39L|ENSG00000102547.19|calcium binding protein 39 like	ENST00000409308.6|CAB39L|ENSG00000102547.19|calcium binding protein 39 like
hg38_v1_chr3_-_142448028_142448047	0.0254406	BRCA1	ENST00000392981.7|XRN1|ENSG00000114127.11|5'-3' exoribonuclease 1
hg38_v1_chr10_+_47322450_47322459	0.0252355	BRCA1	ENST00000581492.3|GDF2|ENSG00000263761.3|growth differentiation factor 2
hg38_v1_chr4_-_184649436_184649509	0.0251515	BRCA1	ENST00000308394.9|CASP3|ENSG00000164305.19|caspase 3	ENST00000517513.5|CASP3|ENSG00000164305.19|caspase 3	ENST00000447121.2|CASP3|ENSG00000164305.19|caspase 3	ENST00000393588.8|CASP3|ENSG00000164305.19|caspase 3	ENST00000523916.5|CASP3|ENSG00000164305.19|caspase 3
hg38_v1_chr20_-_49913693_49913739	0.0240634	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.11|spermatogenesis associated 2
hg38_v1_chr13_+_102799322_102799356	0.0217335	BRCA1	ENST00000639132.1|BIVM-ERCC5|ENSG00000270181.3|BIVM-ERCC5 readthrough
hg38_v1_chr19_-_55580829_55580882	0.0204119	BRCA1	ENST00000592239.1|ZNF579|ENSG00000218891.5|zinc finger protein 579	ENST00000325421.7|ZNF579|ENSG00000218891.5|zinc finger protein 579
hg38_v1_chr2_+_135741814_135741904	0.0200318	BRCA1	ENST00000272638.14|UBXN4|ENSG00000144224.17|UBX domain protein 4
hg38_v1_chr1_+_161766282_161766303	0.0191302	BRCA1	ENST00000680688.1|ATF6|ENSG00000118217.7|activating transcription factor 6
hg38_v1_chr16_-_740980_741021	0.0180857	BRCA1	ENST00000251588.7|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr16_-_740934_740978	0.017174	BRCA1	ENST00000540986.5|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr19_-_37172670_37172741	0.0168112	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000292841.10|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000356958.8|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr10_+_100535927_100535957	0.0164341	BRCA1	ENST00000299163.7|HIF1AN|ENSG00000166135.14|hypoxia inducible factor 1 subunit alpha inhibitor
hg38_v1_chr19_-_37172432_37172440	0.0157893	BRCA1	ENST00000392157.2|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr1_-_17045219_17045261	0.0149968	BRCA1	ENST00000491274.5|SDHB|ENSG00000117118.10|succinate dehydrogenase complex iron sulfur subunit B
hg38_v1_chr14_+_22040576_22040601	0.0143852	BRCA1	ENST00000390448.3|TRAV20|ENSG00000211800.3|T cell receptor alpha variable 20
hg38_v1_chr11_+_1099730_1099770	0.0131967	BRCA1	ENST00000674892.1|MUC2|ENSG00000198788.9|mucin 2, oligomeric mucus/gel-forming
hg38_v1_chr10_-_100529854_100530000	0.0125708	BRCA1	ENST00000370320.4|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000299166.9|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000370322.5|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8
hg38_v1_chr1_-_41242106_41242151	0.0116247	BRCA1	ENST00000337495.9|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372597.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372596.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1
hg38_v1_chr13_+_27251569_27251604	0.0105225	BRCA1	ENST00000272274.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000319826.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000326092.8|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr13_-_30464234_30464372	0.00656423	BRCA1	ENST00000399489.5|HMGB1|ENSG00000189403.15|high mobility group box 1	ENST00000339872.8|HMGB1|ENSG00000189403.15|high mobility group box 1
hg38_v1_chr18_-_26091175_26091226	0.00497051	BRCA1	ENST00000579061.5|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex	ENST00000542420.6|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex
hg38_v1_chrX_-_77895414_77895467	0.00334639	BRCA1	ENST00000618282.5|MAGT1|ENSG00000102158.21|magnesium transporter 1	ENST00000373336.3|MAGT1|ENSG00000102158.21|magnesium transporter 1
hg38_v1_chr10_+_120851341_120851413	0.00301814	BRCA1	ENST00000263461.11|WDR11|ENSG00000120008.16|WD repeat domain 11
hg38_v1_chr9_-_83978429_83978452	0.00178275	BRCA1	ENST00000351839.7|HNRNPK|ENSG00000165119.21|heterogeneous nuclear ribonucleoprotein K
hg38_v1_chr8_-_80171106_80171200	0.00141154	BRCA1	ENST00000519303.6|TPD52|ENSG00000076554.16|tumor protein D52
hg38_v1_chr6_-_43014254_43014293	0.00138387	BRCA1	ENST00000642748.1|MEA1|ENSG00000124733.5|male-enhanced antigen 1
hg38_v1_chr7_-_100119323_100119372	0.00125644	BRCA1	ENST00000523306.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000344095.8|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000417349.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000493322.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000520135.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000460673.2|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000453269.7|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452041.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452438.6|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000451699.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6
hg38_v1_chr14_+_20190896_20190896	0.00118255	BRCA1	ENST00000641879.2|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2	ENST00000641682.1|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2
hg38_v1_chr8_-_20183090_20183120	0.000768015	BRCA1	ENST00000265808.11|SLC18A1|ENSG00000036565.15|solute carrier family 18 member A1	ENST00000522513.5|SLC18A1|ENSG00000036565.15|solute carrier family 18 member A1
hg38_v1_chrX_-_143635081_143635204	0.000492485	BRCA1	ENST00000338017.8|SLITRK4|ENSG00000179542.16|SLIT and NTRK like family member 4
