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GSE58827: Dynamics of the Mouse Liver

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Results for GAGAUGA

Z-value: 0.18

Motif logo

logo of

miRNA associated with seed GAGAUGA

NamemiRBASE accession
mmu-miR-143-3p
MIMAT0000247

Activity profile of GAGAUGA motif

Sorted Z-values of GAGAUGA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr2_+_163054682 0.78 ENSMUST00000018005.3
Mybl2
myeloblastosis oncogene-like 2
chr12_+_113185877 0.37 ENSMUST00000058491.6
Tmem121
transmembrane protein 121
chr14_-_60086832 0.30 ENSMUST00000080368.5
Atp8a2
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
chr13_+_46418266 0.29 ENSMUST00000037923.3
Rbm24
RNA binding motif protein 24
chr12_+_24831583 0.28 ENSMUST00000110942.3
ENSMUST00000078902.6
Mboat2
membrane bound O-acyltransferase domain containing 2
chr7_+_67952817 0.26 ENSMUST00000005671.8
Igf1r
insulin-like growth factor I receptor
chr19_-_17356631 0.26 ENSMUST00000174236.1
Gcnt1
glucosaminyl (N-acetyl) transferase 1, core 2
chr11_-_87359011 0.26 ENSMUST00000055438.4
Ppm1e
protein phosphatase 1E (PP2C domain containing)
chr15_-_103255433 0.23 ENSMUST00000075192.6
Nfe2
nuclear factor, erythroid derived 2
chr1_-_95667555 0.21 ENSMUST00000043336.4
St8sia4
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr11_-_61494173 0.19 ENSMUST00000101085.2
ENSMUST00000079080.6
ENSMUST00000108714.1
Mapk7
mitogen-activated protein kinase 7
chrX_-_93832106 0.16 ENSMUST00000045748.6
Pdk3
pyruvate dehydrogenase kinase, isoenzyme 3
chr9_-_108190352 0.15 ENSMUST00000035208.7
Bsn
bassoon
chr7_-_116038734 0.14 ENSMUST00000166877.1
Sox6
SRY-box containing gene 6
chr6_-_82774448 0.13 ENSMUST00000000642.4
Hk2
hexokinase 2
chr4_+_141420757 0.13 ENSMUST00000102486.4
Hspb7
heat shock protein family, member 7 (cardiovascular)
chr14_-_15438974 0.13 ENSMUST00000055211.4
Lrrc3b
leucine rich repeat containing 3B
chr12_+_86678685 0.13 ENSMUST00000021681.3
Vash1
vasohibin 1
chr7_+_58658181 0.13 ENSMUST00000168747.1
Atp10a
ATPase, class V, type 10A
chr15_-_97831460 0.12 ENSMUST00000079838.7
ENSMUST00000118294.1
Hdac7
histone deacetylase 7
chr4_+_62965560 0.12 ENSMUST00000030043.6
ENSMUST00000107415.1
ENSMUST00000064814.5
Zfp618
zinc finger protein 618
chr1_-_72874877 0.12 ENSMUST00000027377.8
Igfbp5
insulin-like growth factor binding protein 5
chr3_+_130180882 0.12 ENSMUST00000106353.1
ENSMUST00000080335.4
Col25a1
collagen, type XXV, alpha 1
chr9_-_53975246 0.11 ENSMUST00000048409.7
Elmod1
ELMO/CED-12 domain containing 1
chr11_-_96977660 0.11 ENSMUST00000107626.1
ENSMUST00000107624.1
Sp2
Sp2 transcription factor
chr12_-_46818749 0.11 ENSMUST00000021438.6
Nova1
neuro-oncological ventral antigen 1
chr15_-_50889691 0.10 ENSMUST00000165201.2
ENSMUST00000184458.1
Trps1
trichorhinophalangeal syndrome I (human)
chr12_+_52699297 0.10 ENSMUST00000095737.3
Akap6
A kinase (PRKA) anchor protein 6
chr5_-_134688568 0.10 ENSMUST00000015137.3
Limk1
LIM-domain containing, protein kinase
chr15_+_100038635 0.10 ENSMUST00000100203.3
Dip2b
DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr10_+_17796256 0.09 ENSMUST00000037964.6
Txlnb
taxilin beta
chrX_-_142966709 0.09 ENSMUST00000041317.2
Ammecr1
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr15_-_73184840 0.09 ENSMUST00000044113.10
Ago2
argonaute RISC catalytic subunit 2
chr4_-_88033328 0.08 ENSMUST00000078090.5
Mllt3
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
chr1_-_45503282 0.08 ENSMUST00000086430.4
Col5a2
collagen, type V, alpha 2
chr6_-_38876163 0.08 ENSMUST00000161779.1
Hipk2
homeodomain interacting protein kinase 2
chrX_+_7822289 0.08 ENSMUST00000009875.4
Kcnd1
potassium voltage-gated channel, Shal-related family, member 1
chr15_-_11905609 0.08 ENSMUST00000066529.3
Npr3
natriuretic peptide receptor 3
chr11_-_88718223 0.07 ENSMUST00000107909.1
Msi2
musashi RNA-binding protein 2
chr5_-_140649018 0.07 ENSMUST00000042661.3
Ttyh3
tweety homolog 3 (Drosophila)
chr5_+_103754154 0.07 ENSMUST00000054979.3
Aff1
AF4/FMR2 family, member 1
chr6_+_120836201 0.07 ENSMUST00000009256.2
Bcl2l13
BCL2-like 13 (apoptosis facilitator)
chr12_+_3807017 0.07 ENSMUST00000020991.8
ENSMUST00000172509.1
Dnmt3a
DNA methyltransferase 3A
chr4_+_21776261 0.07 ENSMUST00000065111.8
ENSMUST00000040429.5
ENSMUST00000148304.1
Usp45
ubiquitin specific petidase 45
chr15_-_58324161 0.07 ENSMUST00000022985.1
Klhl38
kelch-like 38
chr13_+_15463837 0.07 ENSMUST00000110510.3
Gli3
GLI-Kruppel family member GLI3
chr4_+_100776664 0.07 ENSMUST00000030257.8
ENSMUST00000097955.2
Cachd1
cache domain containing 1
chr8_+_69822429 0.06 ENSMUST00000164890.1
ENSMUST00000034325.4
Lpar2
lysophosphatidic acid receptor 2
chrX_-_139871637 0.06 ENSMUST00000033811.7
ENSMUST00000087401.5
Morc4
microrchidia 4
chr13_-_99516537 0.06 ENSMUST00000064762.4
Map1b
microtubule-associated protein 1B
chr5_+_103425181 0.06 ENSMUST00000048957.9
Ptpn13
protein tyrosine phosphatase, non-receptor type 13
chr1_-_97661950 0.06 ENSMUST00000053033.7
ENSMUST00000149927.1
D1Ertd622e
DNA segment, Chr 1, ERATO Doi 622, expressed
chr12_+_55565188 0.06 ENSMUST00000080123.1
Aldoart2
aldolase 1 A, retrogene 2
chr11_+_61684419 0.06 ENSMUST00000093019.5
Fam83g
family with sequence similarity 83, member G
chr7_+_18925863 0.05 ENSMUST00000172835.1
ENSMUST00000032571.8
Nova2
neuro-oncological ventral antigen 2
chr7_+_75455534 0.05 ENSMUST00000147005.1
ENSMUST00000166315.1
Akap13
A kinase (PRKA) anchor protein 13
chr15_-_103239812 0.05 ENSMUST00000118152.1
Cbx5
chromobox 5
chr2_+_5951440 0.05 ENSMUST00000060092.6
Upf2
UPF2 regulator of nonsense transcripts homolog (yeast)
chr7_+_45413657 0.05 ENSMUST00000058879.6
Ntf5
neurotrophin 5
chr9_-_35558522 0.05 ENSMUST00000034612.5
Ddx25
DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
chr5_+_142960343 0.05 ENSMUST00000031565.8
Fscn1
fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
chr8_-_105827190 0.04 ENSMUST00000041400.5
Ranbp10
RAN binding protein 10
chr10_-_37138863 0.04 ENSMUST00000092584.5
Marcks
myristoylated alanine rich protein kinase C substrate
chr2_-_153241402 0.04 ENSMUST00000056924.7
Plagl2
pleiomorphic adenoma gene-like 2
chr15_-_102722150 0.04 ENSMUST00000023818.3
Calcoco1
calcium binding and coiled coil domain 1
chr4_-_58206596 0.04 ENSMUST00000042850.8
Svep1
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
chr11_+_115381906 0.04 ENSMUST00000053288.5
Cdr2l
cerebellar degeneration-related protein 2-like
chr7_-_122021143 0.04 ENSMUST00000033160.8
Gga2
golgi associated, gamma adaptin ear containing, ARF binding protein 2
chr4_+_136206365 0.04 ENSMUST00000047526.7
Asap3
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
chr19_+_53140430 0.04 ENSMUST00000111741.2
Add3
adducin 3 (gamma)
chr17_-_12769605 0.04 ENSMUST00000024599.7
Igf2r
insulin-like growth factor 2 receptor
chr1_-_106714217 0.04 ENSMUST00000112751.1
Bcl2
B cell leukemia/lymphoma 2
chr9_-_107289847 0.04 ENSMUST00000035194.2
Mapkapk3
mitogen-activated protein kinase-activated protein kinase 3
chr7_-_127021205 0.04 ENSMUST00000159916.1
Prrt2
proline-rich transmembrane protein 2
chr7_+_19119853 0.04 ENSMUST00000053109.3
Fbxo46
F-box protein 46
chr18_+_44380479 0.04 ENSMUST00000025350.8
Dcp2
DCP2 decapping enzyme homolog (S. cerevisiae)
chr1_-_178337774 0.03 ENSMUST00000037748.7
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
chr9_-_101251810 0.03 ENSMUST00000075941.5
Ppp2r3a
protein phosphatase 2, regulatory subunit B'', alpha
chr11_-_34783850 0.03 ENSMUST00000093193.5
ENSMUST00000101365.2
Dock2
dedicator of cyto-kinesis 2
chr14_+_60378242 0.03 ENSMUST00000022561.6
Amer2
APC membrane recruitment 2
chr8_+_79639618 0.03 ENSMUST00000173078.1
ENSMUST00000173286.1
Otud4
OTU domain containing 4
chr2_-_74659861 0.03 ENSMUST00000001867.6
Evx2
even skipped homeotic gene 2 homolog
chr9_-_53248106 0.03 ENSMUST00000065630.6
Ddx10
DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
chr8_-_115707778 0.03 ENSMUST00000109104.1
Maf
avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
chr6_+_100704709 0.03 ENSMUST00000032157.7
Gxylt2
glucoside xylosyltransferase 2
chr15_-_100495239 0.02 ENSMUST00000061457.5
Csrnp2
cysteine-serine-rich nuclear protein 2
chr3_-_27710413 0.02 ENSMUST00000046157.4
Fndc3b
fibronectin type III domain containing 3B
chr19_+_4510472 0.02 ENSMUST00000068004.6
Pcx
pyruvate carboxylase
chr1_-_21079162 0.02 ENSMUST00000037998.4
Tram2
translocating chain-associating membrane protein 2
chr4_+_59805829 0.02 ENSMUST00000030080.6
Snx30
sorting nexin family member 30
chr11_-_47379405 0.02 ENSMUST00000077221.5
Sgcd
sarcoglycan, delta (dystrophin-associated glycoprotein)
chr17_+_3114957 0.02 ENSMUST00000076734.6
Scaf8
SR-related CTD-associated factor 8
chr6_+_8209216 0.02 ENSMUST00000040017.7
Mios
missing oocyte, meiosis regulator, homolog (Drosophila)
chr8_+_31111816 0.02 ENSMUST00000046941.7
Rnf122
ring finger protein 122
chr4_+_123201503 0.02 ENSMUST00000068262.5
Nt5c1a
5'-nucleotidase, cytosolic IA
chr19_-_53390559 0.02 ENSMUST00000025997.5
Smndc1
survival motor neuron domain containing 1
chrX_+_9199865 0.02 ENSMUST00000069763.2
Lancl3
LanC lantibiotic synthetase component C-like 3 (bacterial)
chr1_-_63114516 0.02 ENSMUST00000097718.2
Ino80d
INO80 complex subunit D
chr18_+_42275353 0.02 ENSMUST00000046972.7
ENSMUST00000091920.5
Rbm27
RNA binding motif protein 27
chr5_+_32136458 0.02 ENSMUST00000031017.9
Fosl2
fos-like antigen 2
chr17_-_10319324 0.02 ENSMUST00000097414.3
ENSMUST00000042296.7
Qk
quaking
chr1_+_156558844 0.02 ENSMUST00000166172.2
ENSMUST00000027888.6
Abl2
v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
chr12_-_85339346 0.02 ENSMUST00000040992.7
Nek9
NIMA (never in mitosis gene a)-related expressed kinase 9
chr12_+_107488632 0.02 ENSMUST00000082269.2
3110018I06Rik
RIKEN cDNA 3110018I06 gene
chr2_+_83644435 0.02 ENSMUST00000081591.6
Zc3h15
zinc finger CCCH-type containing 15
chr9_-_62537036 0.01 ENSMUST00000048043.5
Coro2b
coronin, actin binding protein, 2B
chr7_-_134938264 0.01 ENSMUST00000171394.1
Fam196a
family with sequence similarity 196, member A
chr12_+_91400990 0.01 ENSMUST00000021346.7
ENSMUST00000021343.6
Tshr
thyroid stimulating hormone receptor
chrX_-_104201126 0.01 ENSMUST00000056502.6
ENSMUST00000118314.1
C77370
expressed sequence C77370
chr11_+_105589970 0.01 ENSMUST00000168598.1
ENSMUST00000100330.3
Tanc2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr9_+_62677826 0.01 ENSMUST00000034774.8
Itga11
integrin alpha 11
chr6_-_145250177 0.01 ENSMUST00000111710.1
ENSMUST00000155145.1
ENSMUST00000032399.5
Kras
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
chr2_+_80292468 0.01 ENSMUST00000057072.4
Prdx6b
peroxiredoxin 6B
chr1_+_50927511 0.01 ENSMUST00000081851.3
Tmeff2
transmembrane protein with EGF-like and two follistatin-like domains 2
chr11_-_95309557 0.01 ENSMUST00000092766.5
ENSMUST00000072621.5
Kat7
K(lysine) acetyltransferase 7
chr17_+_46202740 0.01 ENSMUST00000087031.5
Xpo5
exportin 5
chr4_+_132274369 0.01 ENSMUST00000030731.4
Taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr10_+_24595623 0.01 ENSMUST00000176228.1
ENSMUST00000129142.1
Ctgf
connective tissue growth factor
chr8_+_84415348 0.01 ENSMUST00000121390.1
ENSMUST00000122053.1
Cacna1a
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr2_-_150485091 0.01 ENSMUST00000109914.1
Zfp345
zinc finger protein 345
chr2_+_180710117 0.01 ENSMUST00000029090.2
Gid8
GID complex subunit 8 homolog (S. cerevisiae)
chr11_+_61022560 0.01 ENSMUST00000089184.4
Kcnj12
potassium inwardly-rectifying channel, subfamily J, member 12
chr14_+_113314602 0.01 ENSMUST00000072359.6
Tpm3-rs7
tropomyosin 3, related sequence 7
chrX_-_144688180 0.01 ENSMUST00000040184.3
Trpc5
transient receptor potential cation channel, subfamily C, member 5
chr6_-_85069449 0.01 ENSMUST00000160783.1
ENSMUST00000160197.1
Exoc6b
exocyst complex component 6B
chr18_+_73573044 0.01 ENSMUST00000091852.4
Mex3c
mex3 homolog C (C. elegans)
chr12_-_51691883 0.01 ENSMUST00000013130.8
ENSMUST00000169503.1
Strn3
striatin, calmodulin binding protein 3
chr8_-_124949165 0.01 ENSMUST00000034469.5
Egln1
EGL nine homolog 1 (C. elegans)
chr9_+_44604844 0.01 ENSMUST00000170489.1
Ddx6
DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
chr7_+_97579868 0.01 ENSMUST00000042399.7
ENSMUST00000107153.1
Rsf1
remodeling and spacing factor 1
chr9_+_108392820 0.01 ENSMUST00000035234.4
1700102P08Rik
RIKEN cDNA 1700102P08 gene
chr5_+_121397936 0.01 ENSMUST00000042163.8
Naa25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit
chr11_+_105292637 0.01 ENSMUST00000100335.3
ENSMUST00000021038.4
Mrc2
mannose receptor, C type 2
chr5_+_75152274 0.00 ENSMUST00000000476.8
Pdgfra
platelet derived growth factor receptor, alpha polypeptide
chr11_+_117654798 0.00 ENSMUST00000106344.1
Tnrc6c
trinucleotide repeat containing 6C
chr4_-_126968124 0.00 ENSMUST00000106108.2
Zmym4
zinc finger, MYM-type 4
chr11_-_103017167 0.00 ENSMUST00000021313.2
Dcakd
dephospho-CoA kinase domain containing
chrX_+_52912232 0.00 ENSMUST00000078944.6
ENSMUST00000101587.3
ENSMUST00000154864.2
Phf6
PHD finger protein 6
chr15_-_93275151 0.00 ENSMUST00000057896.4
ENSMUST00000049484.6
Gxylt1
glucoside xylosyltransferase 1
chr8_+_40511769 0.00 ENSMUST00000098817.2
Vps37a
vacuolar protein sorting 37A (yeast)
chr13_-_93499803 0.00 ENSMUST00000065537.7
Jmy
junction-mediating and regulatory protein

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAUGA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1903944 regulation of hepatocyte apoptotic process(GO:1903943) negative regulation of hepatocyte apoptotic process(GO:1903944)
0.1 0.2 GO:0070375 ERK5 cascade(GO:0070375)
0.0 0.1 GO:0099526 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.2 GO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate(GO:0010510)
0.0 0.3 GO:0061091 regulation of phospholipid translocation(GO:0061091) positive regulation of phospholipid translocation(GO:0061092)
0.0 0.1 GO:1901491 negative regulation of lymphangiogenesis(GO:1901491)
0.0 0.1 GO:0014734 skeletal muscle hypertrophy(GO:0014734)
0.0 0.1 GO:1901526 negative regulation of mitochondrial membrane permeability(GO:0035795) positive regulation of macromitophagy(GO:1901526) positive regulation of mitophagy in response to mitochondrial depolarization(GO:1904925)
0.0 0.2 GO:0034242 negative regulation of syncytium formation by plasma membrane fusion(GO:0034242)
0.0 0.1 GO:0060364 frontal suture morphogenesis(GO:0060364)
0.0 0.1 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.1 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.0 0.3 GO:0060352 cell adhesion molecule production(GO:0060352)
0.0 0.2 GO:0001574 ganglioside biosynthetic process(GO:0001574)
0.0 0.3 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.1 GO:1902261 positive regulation of ryanodine-sensitive calcium-release channel activity(GO:0060316) positive regulation of delayed rectifier potassium channel activity(GO:1902261) positive regulation of cAMP-dependent protein kinase activity(GO:2000481)
0.0 0.1 GO:0060385 axonogenesis involved in innervation(GO:0060385)
0.0 0.0 GO:0061193 taste bud development(GO:0061193)
0.0 0.1 GO:2000741 positive regulation of mesenchymal stem cell differentiation(GO:2000741)
0.0 0.8 GO:0090307 mitotic spindle assembly(GO:0090307)
0.0 0.0 GO:2000373 regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373)
0.0 0.0 GO:0019074 viral genome packaging(GO:0019072) viral RNA genome packaging(GO:0019074)
0.0 0.0 GO:0002277 myeloid dendritic cell activation involved in immune response(GO:0002277)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0031523 Myb complex(GO:0031523)
0.0 0.1 GO:1990257 piccolo-bassoon transport vesicle(GO:1990257)
0.0 0.1 GO:0042567 insulin-like growth factor ternary complex(GO:0042567)
0.0 0.1 GO:0014701 junctional sarcoplasmic reticulum membrane(GO:0014701)
0.0 0.3 GO:0035867 alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867)
0.0 0.0 GO:0042585 germinal vesicle(GO:0042585)
0.0 0.0 GO:0044393 microspike(GO:0044393)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0003829 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity(GO:0003829)
0.1 0.8 GO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting(GO:0001135)
0.0 0.3 GO:0047184 1-acylglycerophosphocholine O-acyltransferase activity(GO:0047184)
0.0 0.2 GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity(GO:0004740)
0.0 0.2 GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828)
0.0 0.3 GO:0043559 insulin binding(GO:0043559)
0.0 0.2 GO:0031995 insulin-like growth factor II binding(GO:0031995)
0.0 0.1 GO:0005250 A-type (transient outward) potassium channel activity(GO:0005250)
0.0 0.1 GO:0016941 natriuretic peptide receptor activity(GO:0016941)
0.0 0.1 GO:0008865 fructokinase activity(GO:0008865) mannokinase activity(GO:0019158)
0.0 0.4 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 0.0 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 REACTOME G0 AND EARLY G1 Genes involved in G0 and Early G1
0.0 0.2 REACTOME ERKS ARE INACTIVATED Genes involved in ERKs are inactivated
0.0 0.2 REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex
0.0 0.3 REACTOME ACYL CHAIN REMODELLING OF PE Genes involved in Acyl chain remodelling of PE