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GSE58827: Dynamics of the Mouse Liver

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Results for GGAGUGU

Z-value: 0.44

Motif logo

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miRNA associated with seed GGAGUGU

NamemiRBASE accession
mmu-miR-122-5p
MIMAT0000246

Activity profile of GGAGUGU motif

Sorted Z-values of GGAGUGU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr7_-_17062384 3.83 ENSMUST00000153833.1
ENSMUST00000108492.2
Hif3a
hypoxia inducible factor 3, alpha subunit
chr7_+_16781341 1.97 ENSMUST00000108496.2
Slc1a5
solute carrier family 1 (neutral amino acid transporter), member 5
chr5_-_148399901 1.20 ENSMUST00000048116.8
Slc7a1
solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
chr3_+_103102604 1.16 ENSMUST00000173206.1
Dennd2c
DENN/MADD domain containing 2C
chr9_+_96196246 1.05 ENSMUST00000165120.2
ENSMUST00000034982.9
Tfdp2
transcription factor Dp 2
chr9_+_59656368 0.99 ENSMUST00000034834.9
ENSMUST00000163694.2
Pkm
pyruvate kinase, muscle
chr19_-_40588338 0.99 ENSMUST00000176939.1
Aldh18a1
aldehyde dehydrogenase 18 family, member A1
chr11_-_87359011 0.99 ENSMUST00000055438.4
Ppm1e
protein phosphatase 1E (PP2C domain containing)
chr7_+_45434833 0.94 ENSMUST00000003964.8
Gys1
glycogen synthase 1, muscle
chr13_-_97099296 0.85 ENSMUST00000071118.4
Gm6169
predicted gene 6169
chr2_-_34913976 0.76 ENSMUST00000028232.3
Phf19
PHD finger protein 19
chrX_+_75382384 0.71 ENSMUST00000033541.4
Fundc2
FUN14 domain containing 2
chr2_-_153529941 0.63 ENSMUST00000035346.7
8430427H17Rik
RIKEN cDNA 8430427H17 gene
chr7_-_126799163 0.63 ENSMUST00000032934.5
Aldoa
aldolase A, fructose-bisphosphate
chr12_-_27342696 0.55 ENSMUST00000079063.5
Sox11
SRY-box containing gene 11
chr15_+_76351303 0.54 ENSMUST00000023212.8
ENSMUST00000160172.1
Maf1
MAF1 homolog (S. cerevisiae)
chr13_-_107022027 0.50 ENSMUST00000117539.1
ENSMUST00000122233.1
ENSMUST00000022204.9
ENSMUST00000159772.1
Kif2a
kinesin family member 2A
chr4_-_45408646 0.49 ENSMUST00000153904.1
ENSMUST00000132815.2
ENSMUST00000107796.1
ENSMUST00000116341.3
Slc25a51
solute carrier family 25, member 51
chr7_+_91090697 0.47 ENSMUST00000107196.2
Dlg2
discs, large homolog 2 (Drosophila)
chr15_-_51991679 0.47 ENSMUST00000022927.9
Rad21
RAD21 homolog (S. pombe)
chr2_-_25608447 0.45 ENSMUST00000058137.8
Rabl6
RAB, member of RAS oncogene family-like 6
chr4_+_129984833 0.44 ENSMUST00000120204.1
Bai2
brain-specific angiogenesis inhibitor 2
chr12_+_53248677 0.42 ENSMUST00000101432.2
Npas3
neuronal PAS domain protein 3
chr16_+_11066292 0.42 ENSMUST00000089011.4
Snn
stannin
chr1_-_178337774 0.40 ENSMUST00000037748.7
Hnrnpu
heterogeneous nuclear ribonucleoprotein U
chr5_-_74068361 0.37 ENSMUST00000119154.1
ENSMUST00000068058.7
Usp46
ubiquitin specific peptidase 46
chr7_-_80803253 0.36 ENSMUST00000167377.1
Iqgap1
IQ motif containing GTPase activating protein 1
chr11_+_70017085 0.34 ENSMUST00000108589.2
Dlg4
discs, large homolog 4 (Drosophila)
chr10_-_42276744 0.32 ENSMUST00000105502.1
ENSMUST00000105501.1
Foxo3
forkhead box O3
chrX_+_96096034 0.31 ENSMUST00000117399.1
Msn
moesin
chr1_-_21961581 0.31 ENSMUST00000029667.6
ENSMUST00000173058.1
ENSMUST00000173404.1
Kcnq5
potassium voltage-gated channel, subfamily Q, member 5
chr8_-_80057989 0.31 ENSMUST00000079038.2
Hhip
Hedgehog-interacting protein
chr10_+_59323296 0.30 ENSMUST00000009789.8
ENSMUST00000092512.4
ENSMUST00000105466.2
P4ha1
procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
chr14_-_121379206 0.27 ENSMUST00000079817.7
Stk24
serine/threonine kinase 24
chr3_+_90341654 0.26 ENSMUST00000049382.4
Gatad2b
GATA zinc finger domain containing 2B
chr19_+_11516473 0.26 ENSMUST00000163078.1
Ms4a6b
membrane-spanning 4-domains, subfamily A, member 6B
chr2_-_131187282 0.26 ENSMUST00000028801.1
Spef1
sperm flagellar 1
chr7_-_16924114 0.25 ENSMUST00000019514.9
Calm3
calmodulin 3
chr17_-_17624458 0.24 ENSMUST00000041047.2
Lnpep
leucyl/cystinyl aminopeptidase
chr4_+_136286061 0.24 ENSMUST00000069195.4
ENSMUST00000130658.1
Zfp46
zinc finger protein 46
chr1_+_75546258 0.23 ENSMUST00000124341.1
Slc4a3
solute carrier family 4 (anion exchanger), member 3
chr6_+_113307160 0.22 ENSMUST00000113122.1
ENSMUST00000113119.1
ENSMUST00000113121.1
ENSMUST00000113117.1
Brpf1
bromodomain and PHD finger containing, 1
chr19_+_11469353 0.21 ENSMUST00000165310.1
Ms4a6c
membrane-spanning 4-domains, subfamily A, member 6C
chr7_+_43463145 0.21 ENSMUST00000107977.1
Vsig10l
ZV-set and immunoglobulin domain containing 10 like
chr4_-_151057933 0.21 ENSMUST00000030797.3
Vamp3
vesicle-associated membrane protein 3
chr6_+_52177498 0.20 ENSMUST00000070587.3
5730596B20Rik
RIKEN cDNA 5730596B20 gene
chr7_-_127208423 0.20 ENSMUST00000120705.1
Tbc1d10b
TBC1 domain family, member 10b
chr16_-_31201150 0.18 ENSMUST00000058033.7
Acap2
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
chr14_-_105896819 0.18 ENSMUST00000022709.4
Spry2
sprouty homolog 2 (Drosophila)
chr11_+_77493408 0.16 ENSMUST00000037285.3
ENSMUST00000100812.3
Git1
G protein-coupled receptor kinase-interactor 1
chrX_-_101269023 0.15 ENSMUST00000117736.1
Gm20489
predicted gene 20489
chr12_-_55821157 0.15 ENSMUST00000110687.1
ENSMUST00000085385.5
Ralgapa1
Ral GTPase activating protein, alpha subunit 1
chrX_-_101263986 0.15 ENSMUST00000101358.2
Gm614
predicted gene 614
chr8_-_84687839 0.15 ENSMUST00000001975.4
Nacc1
nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
chr17_-_28486082 0.14 ENSMUST00000079413.3
Fkbp5
FK506 binding protein 5
chr5_-_69592311 0.13 ENSMUST00000031117.6
Gnpda2
glucosamine-6-phosphate deaminase 2
chr4_-_129742275 0.13 ENSMUST00000066257.5
Khdrbs1
KH domain containing, RNA binding, signal transduction associated 1
chr15_+_76538934 0.13 ENSMUST00000023220.8
Slc52a2
solute carrier protein 52, member 2
chr1_+_55237177 0.12 ENSMUST00000061334.8
Mars2
methionine-tRNA synthetase 2 (mitochondrial)
chr17_-_56935388 0.10 ENSMUST00000025053.8
Mllt1
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
chr2_-_120404058 0.10 ENSMUST00000090042.5
ENSMUST00000110729.1
ENSMUST00000090046.5
Tmem87a
transmembrane protein 87A
chrX_+_166238901 0.10 ENSMUST00000112235.1
Gpm6b
glycoprotein m6b
chr19_-_47536997 0.09 ENSMUST00000182808.1
ENSMUST00000049369.9
Obfc1
oligonucleotide/oligosaccharide-binding fold containing 1
chr1_-_135375233 0.08 ENSMUST00000041240.3
Shisa4
shisa homolog 4 (Xenopus laevis)
chr5_-_31180110 0.08 ENSMUST00000043161.6
ENSMUST00000088010.5
Gtf3c2
general transcription factor IIIC, polypeptide 2, beta
chr16_+_32914094 0.08 ENSMUST00000023491.6
ENSMUST00000170899.1
ENSMUST00000171118.1
ENSMUST00000170201.1
ENSMUST00000165616.1
ENSMUST00000135193.2
Lrch3
leucine-rich repeats and calponin homology (CH) domain containing 3
chr11_+_102189620 0.08 ENSMUST00000070334.3
ENSMUST00000078975.7
G6pc3
glucose 6 phosphatase, catalytic, 3
chr3_+_157947414 0.07 ENSMUST00000164582.1
ENSMUST00000040787.8
Ankrd13c
ankyrin repeat domain 13c
chr9_+_54586450 0.06 ENSMUST00000167866.1
Idh3a
isocitrate dehydrogenase 3 (NAD+) alpha
chr15_-_13173607 0.06 ENSMUST00000036439.4
Cdh6
cadherin 6
chr6_-_39725448 0.06 ENSMUST00000002487.8
Braf
Braf transforming gene
chr4_+_133369702 0.06 ENSMUST00000030669.7
Slc9a1
solute carrier family 9 (sodium/hydrogen exchanger), member 1
chr4_+_123201503 0.06 ENSMUST00000068262.5
Nt5c1a
5'-nucleotidase, cytosolic IA
chr14_-_121505247 0.06 ENSMUST00000088386.6
Slc15a1
solute carrier family 15 (oligopeptide transporter), member 1
chr12_-_104751900 0.05 ENSMUST00000041987.6
Dicer1
dicer 1, ribonuclease type III
chr8_+_88647315 0.05 ENSMUST00000118370.1
ENSMUST00000054324.8
Nod2
nucleotide-binding oligomerization domain containing 2
chr8_+_12757002 0.05 ENSMUST00000033818.3
ENSMUST00000091237.5
Atp11a
ATPase, class VI, type 11A
chr11_-_83429455 0.05 ENSMUST00000052521.2
Gas2l2
growth arrest-specific 2 like 2
chr8_+_4166556 0.05 ENSMUST00000177053.1
ENSMUST00000176149.1
ENSMUST00000176072.1
ENSMUST00000176825.1
Evi5l
ecotropic viral integration site 5 like
chrX_+_101299143 0.04 ENSMUST00000118111.1
ENSMUST00000130555.1
ENSMUST00000151528.1
Nlgn3
neuroligin 3
chr4_-_135272798 0.03 ENSMUST00000037099.8
Clic4
chloride intracellular channel 4 (mitochondrial)
chr1_+_155158703 0.03 ENSMUST00000027743.7
Stx6
syntaxin 6
chr1_+_59912972 0.03 ENSMUST00000036540.5
Fam117b
family with sequence similarity 117, member B
chr15_+_37233036 0.02 ENSMUST00000161405.1
ENSMUST00000022895.8
ENSMUST00000161532.1
Grhl2
grainyhead-like 2 (Drosophila)
chr6_-_85069449 0.02 ENSMUST00000160783.1
ENSMUST00000160197.1
Exoc6b
exocyst complex component 6B
chr4_-_133672601 0.02 ENSMUST00000062118.4
ENSMUST00000067902.6
Pigv
phosphatidylinositol glycan anchor biosynthesis, class V
chr11_-_61930246 0.02 ENSMUST00000102650.3
Akap10
A kinase (PRKA) anchor protein 10
chr7_-_25718976 0.02 ENSMUST00000002683.2
Ccdc97
coiled-coil domain containing 97
chr8_-_84822823 0.01 ENSMUST00000065539.4
Dand5
DAN domain family, member 5
chr11_+_69981127 0.01 ENSMUST00000108593.1
Ctdnep1
CTD nuclear envelope phosphatase 1
chr3_+_88142328 0.00 ENSMUST00000001455.6
ENSMUST00000119251.1
Mef2d
myocyte enhancer factor 2D

Network of associatons between targets according to the STRING database.

First level regulatory network of GGAGUGU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.0 GO:0015825 L-serine transport(GO:0015825)
0.3 1.0 GO:0006592 ornithine biosynthetic process(GO:0006592)
0.1 0.5 GO:0061386 closure of optic fissure(GO:0061386)
0.1 0.4 GO:2000373 regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000371) positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity(GO:2000373)
0.1 1.0 GO:0042866 pyruvate biosynthetic process(GO:0042866)
0.1 0.8 GO:0061087 positive regulation of histone H3-K27 methylation(GO:0061087)
0.1 0.5 GO:0016480 negative regulation of transcription from RNA polymerase III promoter(GO:0016480)
0.1 1.2 GO:0015809 arginine transport(GO:0015809)
0.1 0.5 GO:0045876 positive regulation of sister chromatid cohesion(GO:0045876)
0.1 1.0 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.3 GO:1901300 positive regulation of hydrogen peroxide-mediated programmed cell death(GO:1901300)
0.0 0.6 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.3 GO:1902966 regulation of protein localization to early endosome(GO:1902965) positive regulation of protein localization to early endosome(GO:1902966)
0.0 0.1 GO:0032241 positive regulation of nucleobase-containing compound transport(GO:0032241)
0.0 0.3 GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401)
0.0 0.4 GO:0008343 adult feeding behavior(GO:0008343)
0.0 0.4 GO:1900086 positive regulation of peptidyl-tyrosine autophosphorylation(GO:1900086)
0.0 0.1 GO:0032218 riboflavin transport(GO:0032218)
0.0 0.2 GO:0051387 negative regulation of neurotrophin TRK receptor signaling pathway(GO:0051387)
0.0 0.5 GO:0045161 neuronal ion channel clustering(GO:0045161)
0.0 0.3 GO:0098953 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 0.1 GO:0010912 regulation of isomerase activity(GO:0010911) positive regulation of isomerase activity(GO:0010912)
0.0 0.3 GO:0048680 positive regulation of axon regeneration(GO:0048680)
0.0 0.4 GO:0042711 maternal behavior(GO:0042711)
0.0 0.0 GO:2000331 regulation of terminal button organization(GO:2000331)
0.0 0.1 GO:0032290 peripheral nervous system myelin formation(GO:0032290) regulation of enamel mineralization(GO:0070173)
0.0 0.1 GO:0051612 negative regulation of neurotransmitter uptake(GO:0051581) negative regulation of serotonin uptake(GO:0051612)
0.0 0.1 GO:0015712 hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760)
0.0 0.2 GO:0036010 protein localization to endosome(GO:0036010)
0.0 0.9 GO:0005978 glycogen biosynthetic process(GO:0005978) glucan biosynthetic process(GO:0009250)
0.0 0.1 GO:0098735 positive regulation of the force of heart contraction(GO:0098735)
0.0 0.1 GO:0042938 dipeptide transport(GO:0042938)
0.0 2.6 GO:0001666 response to hypoxia(GO:0001666)
0.0 0.2 GO:0035493 SNARE complex assembly(GO:0035493)
0.0 0.1 GO:0006621 protein retention in ER lumen(GO:0006621)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0016222 procollagen-proline 4-dioxygenase complex(GO:0016222)
0.1 0.5 GO:0000798 nuclear cohesin complex(GO:0000798)
0.1 0.4 GO:0070937 CRD-mediated mRNA stability complex(GO:0070937)
0.0 0.8 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.2 GO:0070775 H3 histone acetyltransferase complex(GO:0070775) MOZ/MORF histone acetyltransferase complex(GO:0070776)
0.0 0.6 GO:0035686 sperm fibrous sheath(GO:0035686)
0.0 0.8 GO:0035098 ESC/E(Z) complex(GO:0035098)
0.0 0.3 GO:0031254 uropod(GO:0001931) cell trailing edge(GO:0031254)
0.0 0.7 GO:0031307 integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.5 GO:0097228 sperm principal piece(GO:0097228)
0.0 0.6 GO:0060077 inhibitory synapse(GO:0060077)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0004743 pyruvate kinase activity(GO:0004743)
0.3 1.0 GO:0019202 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) delta1-pyrroline-5-carboxylate synthetase activity(GO:0017084) amino acid kinase activity(GO:0019202)
0.3 0.9 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.2 1.2 GO:0015181 arginine transmembrane transporter activity(GO:0015181)
0.1 2.0 GO:0022889 L-serine transmembrane transporter activity(GO:0015194) serine transmembrane transporter activity(GO:0022889)
0.1 0.5 GO:0001032 RNA polymerase III type 3 promoter DNA binding(GO:0001032)
0.1 0.6 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 0.3 GO:0097108 hedgehog family protein binding(GO:0097108)
0.1 0.2 GO:0031800 type 3 metabotropic glutamate receptor binding(GO:0031800)
0.1 0.3 GO:0019798 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798)
0.1 0.2 GO:0010484 H3 histone acetyltransferase activity(GO:0010484)
0.0 0.3 GO:0031811 G-protein coupled nucleotide receptor binding(GO:0031811) P2Y1 nucleotide receptor binding(GO:0031812)
0.0 0.4 GO:0034046 poly(G) binding(GO:0034046)
0.0 0.1 GO:0032217 riboflavin transporter activity(GO:0032217)
0.0 0.5 GO:0004385 guanylate kinase activity(GO:0004385)
0.0 0.1 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.0 0.1 GO:0004346 glucose-6-phosphatase activity(GO:0004346) sugar-terminal-phosphatase activity(GO:0050309)
0.0 1.2 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 0.4 GO:0044548 S100 protein binding(GO:0044548)
0.0 0.1 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.0 0.3 GO:0008349 MAP kinase kinase kinase kinase activity(GO:0008349)
0.0 0.1 GO:0035673 oligopeptide transmembrane transporter activity(GO:0035673) dipeptide transporter activity(GO:0042936)
0.0 3.8 GO:0003714 transcription corepressor activity(GO:0003714)
0.0 1.0 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 0.2 GO:0008510 sodium:bicarbonate symporter activity(GO:0008510)
0.0 0.5 GO:0001105 RNA polymerase II transcription coactivator activity(GO:0001105)
0.0 0.8 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.1 GO:0004525 ribonuclease III activity(GO:0004525) double-stranded RNA-specific ribonuclease activity(GO:0032296)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.8 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.0 1.2 PID INSULIN GLUCOSE PATHWAY Insulin-mediated glucose transport
0.0 0.4 PID NECTIN PATHWAY Nectin adhesion pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.8 REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha
0.1 0.2 REACTOME ENDOSOMAL VACUOLAR PATHWAY Genes involved in Endosomal/Vacuolar pathway
0.1 3.2 REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE Genes involved in Amino acid transport across the plasma membrane
0.0 1.0 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 1.8 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.0 0.5 REACTOME KINESINS Genes involved in Kinesins
0.0 0.2 REACTOME SPRY REGULATION OF FGF SIGNALING Genes involved in Spry regulation of FGF signaling
0.0 0.3 REACTOME SIGNALING BY NODAL Genes involved in Signaling by NODAL
0.0 0.4 REACTOME NEPHRIN INTERACTIONS Genes involved in Nephrin interactions