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GSE58827: Dynamics of the Mouse Liver

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Results for Hoxa1

Z-value: 0.43

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Transcription factors associated with Hoxa1

Gene Symbol Gene ID Gene Info
Hoxa1
ENSMUSG00000029844.9 homeobox A1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hoxa1mm10_v2_chr6_-_52158292_521583240.335.1e-02Click!

Activity profile of Hoxa1 motif

Sorted Z-values of Hoxa1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr13_-_12340723 1.97 ENSMUST00000168193.1
ENSMUST00000110616.1
ENSMUST00000064204.7
Actn2
actinin alpha 2
chr11_-_43601540 1.96 ENSMUST00000020672.4
Fabp6
fatty acid binding protein 6, ileal (gastrotropin)
chr17_+_25298389 1.75 ENSMUST00000037453.2
Prss34
protease, serine, 34
chr15_-_95528702 1.70 ENSMUST00000166170.1
Nell2
NEL-like 2
chr11_+_24080664 0.99 ENSMUST00000118955.1
Bcl11a
B cell CLL/lymphoma 11A (zinc finger protein)
chr14_-_69284982 0.96 ENSMUST00000183882.1
ENSMUST00000037064.4
Slc25a37
solute carrier family 25, member 37
chr10_+_88885992 0.75 ENSMUST00000020255.6
Slc5a8
solute carrier family 5 (iodide transporter), member 8
chrX_+_56454871 0.74 ENSMUST00000039374.2
ENSMUST00000101553.2
Ddx26b
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
chr1_-_119053339 0.70 ENSMUST00000161301.1
ENSMUST00000161451.1
ENSMUST00000162607.1
Gli2
GLI-Kruppel family member GLI2
chr3_+_114030532 0.70 ENSMUST00000123619.1
ENSMUST00000092155.5
Col11a1
collagen, type XI, alpha 1
chr7_-_30534180 0.66 ENSMUST00000044338.4
Arhgap33
Rho GTPase activating protein 33
chr9_+_65890237 0.65 ENSMUST00000045802.6
2810417H13Rik
RIKEN cDNA 2810417H13 gene
chr4_-_143299498 0.64 ENSMUST00000030317.7
Pdpn
podoplanin
chr14_-_69503316 0.62 ENSMUST00000179116.2
Gm21464
predicted gene, 21464
chr7_+_73391160 0.62 ENSMUST00000128471.1
Rgma
RGM domain family, member A
chr1_-_45503282 0.59 ENSMUST00000086430.4
Col5a2
collagen, type V, alpha 2
chr2_-_131042682 0.58 ENSMUST00000028787.5
ENSMUST00000110239.1
ENSMUST00000110234.1
Gfra4
glial cell line derived neurotrophic factor family receptor alpha 4
chr8_-_8639363 0.56 ENSMUST00000152698.1
Efnb2
ephrin B2
chr18_-_13972617 0.52 ENSMUST00000025288.7
Zfp521
zinc finger protein 521
chr9_-_21312255 0.52 ENSMUST00000115433.3
ENSMUST00000003397.7
Ap1m2
adaptor protein complex AP-1, mu 2 subunit
chr15_+_102990576 0.50 ENSMUST00000001703.6
Hoxc8
homeobox C8
chr2_+_165595009 0.46 ENSMUST00000088132.6
Eya2
eyes absent 2 homolog (Drosophila)
chr10_+_14523062 0.45 ENSMUST00000096020.5
Gm10335
predicted gene 10335
chr19_-_41743665 0.42 ENSMUST00000025993.3
Slit1
slit homolog 1 (Drosophila)
chr13_+_72628802 0.41 ENSMUST00000074372.4
Irx2
Iroquois related homeobox 2 (Drosophila)
chr6_+_142298419 0.40 ENSMUST00000041993.2
Iapp
islet amyloid polypeptide
chr7_+_144838590 0.37 ENSMUST00000105898.1
Fgf3
fibroblast growth factor 3
chr9_+_110344185 0.35 ENSMUST00000142100.1
Scap
SREBF chaperone
chr1_-_119053619 0.34 ENSMUST00000062483.8
Gli2
GLI-Kruppel family member GLI2
chr2_+_32587057 0.32 ENSMUST00000102818.4
St6galnac4
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
chr15_+_82252397 0.32 ENSMUST00000136948.1
1500009C09Rik
RIKEN cDNA 1500009C09 gene
chr2_-_160619971 0.32 ENSMUST00000109473.1
Gm14221
predicted gene 14221
chr5_+_27261916 0.32 ENSMUST00000101471.3
Dpp6
dipeptidylpeptidase 6
chr4_-_143299463 0.31 ENSMUST00000119654.1
Pdpn
podoplanin
chr2_-_131043088 0.31 ENSMUST00000110240.3
ENSMUST00000066958.4
ENSMUST00000110235.1
Gfra4
glial cell line derived neurotrophic factor family receptor alpha 4
chr17_-_51826562 0.30 ENSMUST00000024720.4
ENSMUST00000129667.1
ENSMUST00000156051.1
ENSMUST00000169480.1
ENSMUST00000148559.1
Satb1
special AT-rich sequence binding protein 1
chr13_+_31806627 0.30 ENSMUST00000062292.2
Foxc1
forkhead box C1
chr2_+_163225363 0.30 ENSMUST00000099110.3
ENSMUST00000165937.1
Tox2
TOX high mobility group box family member 2
chrX_-_150813637 0.30 ENSMUST00000112700.1
Maged2
melanoma antigen, family D, 2
chr9_-_96862903 0.28 ENSMUST00000121077.1
ENSMUST00000124923.1
Acpl2
acid phosphatase-like 2
chrX_-_150812932 0.27 ENSMUST00000131241.1
ENSMUST00000147152.1
ENSMUST00000143843.1
Maged2
melanoma antigen, family D, 2
chr5_-_145201829 0.26 ENSMUST00000162220.1
ENSMUST00000031632.8
Zkscan14
zinc finger with KRAB and SCAN domains 14
chr19_+_46396885 0.26 ENSMUST00000039922.6
ENSMUST00000111867.2
ENSMUST00000120778.1
Sufu
suppressor of fused homolog (Drosophila)
chr9_+_58129321 0.25 ENSMUST00000034880.3
Stra6
stimulated by retinoic acid gene 6
chr9_+_58129062 0.24 ENSMUST00000085677.2
Stra6
stimulated by retinoic acid gene 6
chr10_+_79988584 0.24 ENSMUST00000004784.4
ENSMUST00000105374.1
Cnn2
calponin 2
chr3_+_55782500 0.21 ENSMUST00000075422.4
Mab21l1
mab-21-like 1 (C. elegans)
chr10_+_94576254 0.21 ENSMUST00000117929.1
Tmcc3
transmembrane and coiled coil domains 3
chr4_+_119814495 0.21 ENSMUST00000106307.2
Hivep3
human immunodeficiency virus type I enhancer binding protein 3
chr3_+_58526303 0.20 ENSMUST00000138848.1
Eif2a
eukaryotic translation initiation factor 2A
chr2_-_152951688 0.20 ENSMUST00000109811.3
Dusp15
dual specificity phosphatase-like 15
chr14_+_66344369 0.19 ENSMUST00000118426.1
ENSMUST00000121955.1
ENSMUST00000120229.1
ENSMUST00000134440.1
Stmn4
stathmin-like 4
chr9_-_31464238 0.19 ENSMUST00000048050.7
Tmem45b
transmembrane protein 45b
chr4_+_101507947 0.18 ENSMUST00000149047.1
ENSMUST00000106929.3
Dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6
chr4_+_138775735 0.17 ENSMUST00000030528.2
Pla2g2d
phospholipase A2, group IID
chr3_+_58525821 0.17 ENSMUST00000029387.8
Eif2a
eukaryotic translation initiation factor 2A
chr3_+_68572245 0.17 ENSMUST00000170788.2
Schip1
schwannomin interacting protein 1
chr4_-_145315143 0.17 ENSMUST00000030339.6
Tnfrsf8
tumor necrosis factor receptor superfamily, member 8
chr5_+_137030275 0.17 ENSMUST00000041543.8
Vgf
VGF nerve growth factor inducible
chr2_+_90885860 0.16 ENSMUST00000111466.2
C1qtnf4
C1q and tumor necrosis factor related protein 4
chr1_-_180813534 0.15 ENSMUST00000159789.1
ENSMUST00000081026.4
H3f3a
H3 histone, family 3A
chr1_+_153891646 0.15 ENSMUST00000050660.4
Teddm1
transmembrane epididymal protein 1
chrX_-_75578188 0.15 ENSMUST00000033545.5
Rab39b
RAB39B, member RAS oncogene family
chr14_+_66344296 0.15 ENSMUST00000152093.1
ENSMUST00000074523.6
Stmn4
stathmin-like 4
chr17_-_28622419 0.15 ENSMUST00000114767.1
Srpk1
serine/arginine-rich protein specific kinase 1
chr11_+_58665561 0.15 ENSMUST00000072030.3
Olfr322
olfactory receptor 322
chr16_+_36308045 0.15 ENSMUST00000114851.1
Gm4758
predicted gene 4758
chr1_-_180813591 0.14 ENSMUST00000162118.1
ENSMUST00000159685.1
ENSMUST00000161308.1
H3f3a
H3 histone, family 3A
chr1_+_89454769 0.14 ENSMUST00000027521.8
ENSMUST00000074945.5
Agap1
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
chr2_+_65845767 0.13 ENSMUST00000122912.1
Csrnp3
cysteine-serine-rich nuclear protein 3
chr17_+_78491549 0.12 ENSMUST00000079363.4
Gm10093
predicted pseudogene 10093
chr4_+_101507855 0.12 ENSMUST00000038207.5
Dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6
chr6_-_52012476 0.11 ENSMUST00000078214.5
Skap2
src family associated phosphoprotein 2
chr14_-_103844173 0.11 ENSMUST00000022718.3
Ednrb
endothelin receptor type B
chr15_+_98167806 0.11 ENSMUST00000031914.4
AI836003
expressed sequence AI836003
chr11_-_5898771 0.11 ENSMUST00000102921.3
Myl7
myosin, light polypeptide 7, regulatory
chr10_-_10429839 0.11 ENSMUST00000045328.7
Adgb
androglobin
chr1_+_153665274 0.10 ENSMUST00000152114.1
ENSMUST00000111812.1
Rgs8
regulator of G-protein signaling 8
chr6_+_49319274 0.10 ENSMUST00000055559.7
ENSMUST00000114491.1
Ccdc126
coiled-coil domain containing 126
chr6_+_116506516 0.10 ENSMUST00000075756.2
Olfr212
olfactory receptor 212
chr13_+_99184733 0.10 ENSMUST00000056558.8
Zfp366
zinc finger protein 366
chr13_-_103764502 0.09 ENSMUST00000074616.5
Srek1
splicing regulatory glutamine/lysine-rich protein 1
chr11_-_69549108 0.09 ENSMUST00000108659.1
Dnah2
dynein, axonemal, heavy chain 2
chr8_-_105484350 0.09 ENSMUST00000044286.5
Zdhhc1
zinc finger, DHHC domain containing 1
chr16_+_18877037 0.09 ENSMUST00000120532.1
ENSMUST00000004222.7
Hira
histone cell cycle regulation defective homolog A (S. cerevisiae)
chr9_-_4796218 0.09 ENSMUST00000027020.6
ENSMUST00000063508.7
ENSMUST00000163309.1
Gria4
glutamate receptor, ionotropic, AMPA4 (alpha 4)
chr7_+_103979176 0.09 ENSMUST00000098185.1
Olfr635
olfactory receptor 635
chr2_+_36452587 0.09 ENSMUST00000072854.1
Olfr340
olfactory receptor 340
chr2_+_36230426 0.08 ENSMUST00000062069.5
Ptgs1
prostaglandin-endoperoxide synthase 1
chr9_+_113930934 0.08 ENSMUST00000084885.5
ENSMUST00000009885.7
Ubp1
upstream binding protein 1
chr4_+_150997081 0.07 ENSMUST00000030803.1
Uts2
urotensin 2
chr10_+_90071095 0.07 ENSMUST00000183109.1
Anks1b
ankyrin repeat and sterile alpha motif domain containing 1B
chr14_+_70077375 0.06 ENSMUST00000035908.1
Egr3
early growth response 3
chr11_+_96351632 0.06 ENSMUST00000100523.5
Hoxb2
homeobox B2
chr2_-_26246707 0.06 ENSMUST00000166349.1
C030048H21Rik
RIKEN cDNA C030048H21 gene
chr12_-_80260356 0.05 ENSMUST00000021554.8
Actn1
actinin, alpha 1
chr3_+_138352378 0.05 ENSMUST00000090166.4
Adh6b
alcohol dehydrogenase 6B (class V)
chr5_-_107289561 0.05 ENSMUST00000031224.8
Tgfbr3
transforming growth factor, beta receptor III
chr15_-_78388757 0.05 ENSMUST00000169575.1
Tex33
testis expressed 33
chr9_+_58129476 0.05 ENSMUST00000133287.1
Stra6
stimulated by retinoic acid gene 6
chr10_+_81628540 0.04 ENSMUST00000123896.1
Ankrd24
ankyrin repeat domain 24
chr12_+_53248677 0.04 ENSMUST00000101432.2
Npas3
neuronal PAS domain protein 3
chr5_+_43515513 0.04 ENSMUST00000167522.1
ENSMUST00000144558.1
ENSMUST00000076939.6
C1qtnf7
C1q and tumor necrosis factor related protein 7
chr15_+_74516196 0.04 ENSMUST00000042035.9
Bai1
brain-specific angiogenesis inhibitor 1
chr17_-_28622479 0.04 ENSMUST00000130643.1
Srpk1
serine/arginine-rich protein specific kinase 1
chr2_+_152962485 0.04 ENSMUST00000099197.2
ENSMUST00000103155.3
Ttll9
tubulin tyrosine ligase-like family, member 9
chr11_-_65159890 0.03 ENSMUST00000020855.3
ENSMUST00000108696.1
1700086D15Rik
RIKEN cDNA 1700086D15 gene
chr6_+_40442863 0.02 ENSMUST00000038907.8
ENSMUST00000141490.1
Wee2
WEE1 homolog 2 (S. pombe)
chr7_+_140322602 0.02 ENSMUST00000078103.2
Olfr525
olfactory receptor 525
chr2_+_124610573 0.02 ENSMUST00000103239.3
ENSMUST00000103240.2
Sema6d
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
chr17_+_70522149 0.02 ENSMUST00000140728.1
Dlgap1
discs, large (Drosophila) homolog-associated protein 1
chr9_-_20336094 0.02 ENSMUST00000086473.3
Olfr18
olfactory receptor 18
chr14_+_56575603 0.02 ENSMUST00000161553.1
Parp4
poly (ADP-ribose) polymerase family, member 4
chr7_-_16917184 0.01 ENSMUST00000173139.1
Calm3
calmodulin 3
chr4_-_11981265 0.01 ENSMUST00000098260.2
Gm10604
predicted gene 10604
chr4_-_108406676 0.01 ENSMUST00000184609.1
Gpx7
glutathione peroxidase 7

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxa1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.0 GO:2001137 positive regulation of endocytic recycling(GO:2001137)
0.3 1.0 GO:1990764 regulation of myofibroblast contraction(GO:1904328) myofibroblast contraction(GO:1990764)
0.3 1.0 GO:0060032 notochord regression(GO:0060032)
0.2 1.0 GO:1904799 regulation of neuron remodeling(GO:1904799) negative regulation of neuron remodeling(GO:1904800)
0.1 0.6 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.1 1.8 GO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan(GO:0019800)
0.1 0.7 GO:0035989 tendon development(GO:0035989)
0.1 1.7 GO:0046543 development of secondary female sexual characteristics(GO:0046543)
0.1 0.3 GO:1990869 apoptotic process involved in outflow tract morphogenesis(GO:0003275) regulation of apoptotic process involved in outflow tract morphogenesis(GO:1902256) response to chemokine(GO:1990868) cellular response to chemokine(GO:1990869)
0.1 0.4 GO:0072272 proximal/distal pattern formation involved in metanephric nephron development(GO:0072272)
0.1 0.3 GO:0031509 telomeric heterochromatin assembly(GO:0031509) negative regulation of chromosome condensation(GO:1902340)
0.1 0.6 GO:0070294 renal sodium ion absorption(GO:0070294)
0.1 0.6 GO:1903847 regulation of aorta morphogenesis(GO:1903847) positive regulation of aorta morphogenesis(GO:1903849)
0.1 0.5 GO:0061143 alveolar primary septum development(GO:0061143)
0.1 0.3 GO:0021775 smoothened signaling pathway involved in ventral spinal cord interneuron specification(GO:0021775) smoothened signaling pathway involved in spinal cord motor neuron cell fate specification(GO:0021776)
0.1 0.4 GO:1990928 response to amino acid starvation(GO:1990928)
0.1 0.4 GO:0033563 dorsal/ventral axon guidance(GO:0033563)
0.1 0.4 GO:0097647 calcitonin family receptor signaling pathway(GO:0097646) amylin receptor signaling pathway(GO:0097647)
0.1 2.0 GO:0008206 bile acid metabolic process(GO:0008206)
0.0 0.3 GO:0072318 clathrin coat disassembly(GO:0072318)
0.0 0.4 GO:0030916 otic vesicle formation(GO:0030916)
0.0 0.3 GO:0016576 histone dephosphorylation(GO:0016576)
0.0 0.6 GO:1900121 negative regulation of receptor binding(GO:1900121)
0.0 0.1 GO:0014043 negative regulation of neuron maturation(GO:0014043)
0.0 0.1 GO:0046005 positive regulation of circadian sleep/wake cycle, REM sleep(GO:0046005)
0.0 0.1 GO:0021570 rhombomere 4 development(GO:0021570)
0.0 0.2 GO:0002361 CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation(GO:0002361)
0.0 1.0 GO:0006826 iron ion transport(GO:0006826)
0.0 0.1 GO:0007181 transforming growth factor beta receptor complex assembly(GO:0007181)
0.0 0.3 GO:0032933 response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501)
0.0 0.1 GO:0035633 cyclooxygenase pathway(GO:0019371) maintenance of blood-brain barrier(GO:0035633)
0.0 0.2 GO:0043084 penile erection(GO:0043084)
0.0 0.2 GO:0042535 positive regulation of tumor necrosis factor biosynthetic process(GO:0042535)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0005588 collagen type V trimer(GO:0005588)
0.1 1.0 GO:0097197 tetraspanin-enriched microdomain(GO:0097197)
0.1 1.0 GO:0097542 ciliary tip(GO:0097542)
0.1 0.7 GO:0005583 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 0.3 GO:0001740 Barr body(GO:0001740)
0.0 0.4 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 2.0 GO:0005865 striated muscle thin filament(GO:0005865)
0.0 0.1 GO:0034673 inhibin-betaglycan-ActRII complex(GO:0034673)
0.0 0.1 GO:0032983 kainate selective glutamate receptor complex(GO:0032983)
0.0 0.1 GO:0032127 dense core granule membrane(GO:0032127)
0.0 0.5 GO:0030131 clathrin adaptor complex(GO:0030131)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.0 GO:0051373 FATZ binding(GO:0051373)
0.3 0.9 GO:0016167 glial cell-derived neurotrophic factor receptor activity(GO:0016167)
0.2 2.0 GO:0032052 bile acid binding(GO:0032052)
0.1 1.0 GO:0015093 ferrous iron transmembrane transporter activity(GO:0015093)
0.1 0.4 GO:0048495 Roundabout binding(GO:0048495)
0.0 1.0 GO:0008517 folic acid transporter activity(GO:0008517)
0.0 0.6 GO:1990459 transferrin receptor binding(GO:1990459)
0.0 0.1 GO:0004962 endothelin receptor activity(GO:0004962)
0.0 0.3 GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665)
0.0 1.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0030144 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity(GO:0030144)
0.0 1.1 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 1.7 GO:0005080 protein kinase C binding(GO:0005080)
0.0 0.5 GO:0051183 vitamin transporter activity(GO:0051183)
0.0 0.1 GO:0004971 AMPA glutamate receptor activity(GO:0004971)
0.0 0.6 GO:0046875 ephrin receptor binding(GO:0046875)
0.0 0.2 GO:0048406 nerve growth factor binding(GO:0048406)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.0 PID HEDGEHOG 2PATHWAY Signaling events mediated by the Hedgehog family
0.0 1.2 NABA COLLAGENS Genes encoding collagen proteins
0.0 0.6 PID EPHRINB REV PATHWAY Ephrin B reverse signaling
0.0 0.3 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.0 0.2 SA MMP CYTOKINE CONNECTION Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix.
0.0 2.8 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.0 0.6 PID BMP PATHWAY BMP receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.0 REACTOME RECYCLING OF BILE ACIDS AND SALTS Genes involved in Recycling of bile acids and salts
0.1 2.0 REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF CAMKII Genes involved in CREB phosphorylation through the activation of CaMKII
0.0 0.5 REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression
0.0 1.4 REACTOME NCAM1 INTERACTIONS Genes involved in NCAM1 interactions
0.0 0.4 REACTOME FGFR1 LIGAND BINDING AND ACTIVATION Genes involved in FGFR1 ligand binding and activation
0.0 1.0 REACTOME NETRIN1 SIGNALING Genes involved in Netrin-1 signaling
0.0 0.3 REACTOME TERMINATION OF O GLYCAN BIOSYNTHESIS Genes involved in Termination of O-glycan biosynthesis
0.0 0.7 REACTOME COLLAGEN FORMATION Genes involved in Collagen formation
0.0 0.1 REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION Genes involved in Unblocking of NMDA receptor, glutamate binding and activation
0.0 0.3 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.7 REACTOME AMYLOIDS Genes involved in Amyloids