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GSE58827: Dynamics of the Mouse Liver

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Results for Nkx2-4

Z-value: 0.58

Motif logo

Transcription factors associated with Nkx2-4

Gene Symbol Gene ID Gene Info
ENSMUSG00000054160.2 NK2 homeobox 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Nkx2-4mm10_v2_chr2_-_147085445_1470854830.316.4e-02Click!

Activity profile of Nkx2-4 motif

Sorted Z-values of Nkx2-4 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr6_+_41354105 4.00 ENSMUST00000072103.5
trypsin 10
chr3_-_92588982 3.76 ENSMUST00000098888.5
sperm mitochondria-associated cysteine-rich protein
chr6_-_122609964 1.48 ENSMUST00000032211.4
growth differentiation factor 3
chr2_+_131950855 1.21 ENSMUST00000110170.1
ENSMUST00000110172.2
ENSMUST00000110171.2
prion protein dublet
chr13_+_108316395 1.16 ENSMUST00000171178.1
DEP domain containing 1B
chr14_-_47418407 1.15 ENSMUST00000043296.3
discs, large (Drosophila) homolog-associated protein 5
chr19_-_39886730 1.14 ENSMUST00000168838.1
cytochrome P450, family 2, subfamily c, polypeptide 69
chr7_-_81566939 1.13 ENSMUST00000042318.5
fibronectin type III and SPRY domain containing 2
chr17_-_57194170 1.13 ENSMUST00000005976.6
tumor necrosis factor (ligand) superfamily, member 14
chr3_+_153844209 1.11 ENSMUST00000044089.3
ankyrin repeat and SOCS box-containing 17
chr6_+_134929118 1.00 ENSMUST00000185152.1
ENSMUST00000184504.1
RP23-45G16.5
chr3_-_10301169 0.99 ENSMUST00000119761.1
ENSMUST00000029043.6
fatty acid binding protein 12
chr10_+_20347788 0.98 ENSMUST00000169712.1
mitochondrial fission regulator 2
chr11_+_110968056 0.90 ENSMUST00000125692.1
potassium inwardly-rectifying channel, subfamily J, member 16
chr6_+_134929089 0.88 ENSMUST00000183867.1
ENSMUST00000184991.1
ENSMUST00000183905.1
RP23-45G16.5
chr15_-_26895049 0.85 ENSMUST00000059204.9
F-box and leucine-rich repeat protein 7
chr1_+_174158722 0.80 ENSMUST00000068403.3
olfactory receptor 420
chr12_+_111406809 0.79 ENSMUST00000150384.1
RIKEN cDNA A230065H16 gene
chr3_+_88629499 0.79 ENSMUST00000175745.1
rho/rac guanine nucleotide exchange factor (GEF) 2
chr15_-_100669512 0.70 ENSMUST00000182574.1
ENSMUST00000182775.1
bridging integrator 2
chr7_-_132813095 0.70 ENSMUST00000106165.1
family with sequence similarity 53, member B
chr15_-_100669535 0.67 ENSMUST00000183211.1
bridging integrator 2
chr6_+_29398920 0.67 ENSMUST00000181464.1
ENSMUST00000180829.1
coiled-coil domain containing 136
chr15_-_100669496 0.66 ENSMUST00000182814.1
ENSMUST00000182068.1
bridging integrator 2
chr6_-_98342728 0.64 ENSMUST00000164491.1
predicted gene 765
chr7_-_100932140 0.63 ENSMUST00000107032.1
Rho guanine nucleotide exchange factor (GEF) 17
chr17_+_6689072 0.59 ENSMUST00000160483.1
synaptotagmin-like 3
chr5_+_89028035 0.58 ENSMUST00000113216.2
ENSMUST00000134303.1
solute carrier family 4 (anion exchanger), member 4
chr9_+_108560422 0.55 ENSMUST00000081111.8
inosine 5'-phosphate dehydrogenase 2
chr5_+_89027959 0.51 ENSMUST00000130041.1
solute carrier family 4 (anion exchanger), member 4
chr9_-_71896047 0.50 ENSMUST00000184448.1
transcription factor 12
chr2_+_156840966 0.49 ENSMUST00000109564.1
TGFB-induced factor homeobox 2
chr13_-_105271039 0.48 ENSMUST00000069686.6
ring finger protein 180
chr3_-_110250963 0.48 ENSMUST00000106567.1
protein arginine N-methyltransferase 6
chr10_+_128232065 0.47 ENSMUST00000055539.4
ENSMUST00000105244.1
ENSMUST00000105243.2
ENSMUST00000125289.1
ENSMUST00000105242.1
timeless circadian clock 1
chr11_+_70026815 0.45 ENSMUST00000135916.2
discs, large homolog 4 (Drosophila)
chr15_+_103009479 0.45 ENSMUST00000001711.4
homeobox C6
chr15_+_66670749 0.44 ENSMUST00000065916.7
thyroglobulin
chr13_+_108860072 0.43 ENSMUST00000177907.1
phosphodiesterase 4D, cAMP specific
chr19_-_39812744 0.43 ENSMUST00000162507.1
ENSMUST00000160476.1
cytochrome P450, family 2, subfamily c, polypeptide 40
chr5_-_64932761 0.43 ENSMUST00000059349.4
toll-like receptor 1
chr13_-_66852017 0.42 ENSMUST00000059329.6
predicted gene, 17449
chr2_-_93046053 0.42 ENSMUST00000111272.1
ENSMUST00000178666.1
ENSMUST00000147339.1
PR domain containing 11
chr1_+_85649988 0.42 ENSMUST00000155094.1
nuclear antigen Sp100
chr5_-_120749848 0.42 ENSMUST00000053909.6
ENSMUST00000081491.6
2'-5' oligoadenylate synthetase 2
chr1_+_85650008 0.41 ENSMUST00000054279.8
ENSMUST00000147552.1
ENSMUST00000153574.1
ENSMUST00000150967.1
nuclear antigen Sp100
chr2_+_157456917 0.41 ENSMUST00000109529.1
Rous sarcoma oncogene
chr11_+_101733011 0.40 ENSMUST00000129741.1
DEAH (Asp-Glu-Ala-His) box polypeptide 8
chr13_+_65512678 0.40 ENSMUST00000081471.2
predicted gene 10139
chr7_+_128129536 0.38 ENSMUST00000033053.6
integrin alpha X
chr2_-_147186389 0.35 ENSMUST00000109970.3
ENSMUST00000067075.5
NK2 homeobox 2
chr2_+_174643534 0.35 ENSMUST00000059452.5
zinc finger protein 831
chr15_-_98898483 0.35 ENSMUST00000023737.4
desert hedgehog
chr6_+_123229843 0.33 ENSMUST00000112554.2
ENSMUST00000024118.4
ENSMUST00000117130.1
C-type lectin domain family 4, member n
chr19_-_39649046 0.33 ENSMUST00000067328.6
cytochrome P450, family 2, subfamily c, polypeptide 67
chr3_-_59220150 0.33 ENSMUST00000170388.1
purinergic receptor P2Y, G-protein coupled 12
chr5_+_34999111 0.30 ENSMUST00000114283.1
regulator of G-protein signaling 12
chr7_-_34812677 0.29 ENSMUST00000078686.6
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
chr2_-_85035487 0.27 ENSMUST00000028465.7
purinergic receptor P2X, ligand-gated ion channel, 3
chr7_-_115824699 0.27 ENSMUST00000169129.1
SRY-box containing gene 6
chr17_-_51832666 0.25 ENSMUST00000144331.1
special AT-rich sequence binding protein 1
chr11_+_101732950 0.25 ENSMUST00000039152.7
DEAH (Asp-Glu-Ala-His) box polypeptide 8
chr8_-_40308331 0.25 ENSMUST00000118639.1
fibroblast growth factor 20
chr10_-_26373956 0.23 ENSMUST00000105519.3
ENSMUST00000040219.6
l(3)mbt-like 3 (Drosophila)
chr1_-_37536232 0.22 ENSMUST00000042161.8
mannoside acetylglucosaminyltransferase 4, isoenzyme A
chr1_+_85650044 0.21 ENSMUST00000066427.4
nuclear antigen Sp100
chr9_-_58158498 0.21 ENSMUST00000168864.2
immunoglobulin superfamily containing leucine-rich repeat
chr14_+_26514554 0.19 ENSMUST00000104927.1
predicted gene 2178
chr19_-_45742873 0.18 ENSMUST00000026241.5
ENSMUST00000026240.7
ENSMUST00000111928.1
fibroblast growth factor 8
chrX_+_107089234 0.17 ENSMUST00000118666.1
ENSMUST00000053375.3
purinergic receptor P2Y, G-protein coupled 10
chrX_+_56447965 0.17 ENSMUST00000079663.6
predicted gene 2174
chr12_+_105685352 0.17 ENSMUST00000051934.5
GSK3B interacting protein
chrX_+_112604274 0.16 ENSMUST00000071814.6
zinc finger protein 711
chr15_+_54410755 0.14 ENSMUST00000036737.3
collectin sub-family member 10
chr12_+_38781093 0.14 ENSMUST00000161513.1
ets variant gene 1
chr7_-_80905060 0.13 ENSMUST00000119428.1
ENSMUST00000026817.4
neuromedin B
chr2_-_170497141 0.12 ENSMUST00000038824.5
cytochrome P450, family 24, subfamily a, polypeptide 1
chr6_+_21986438 0.12 ENSMUST00000115382.1
cadherin-like and PC-esterase domain containing 1
chr4_+_48663502 0.09 ENSMUST00000030033.4
muscle-related coiled-coil protein
chr6_-_91807424 0.09 ENSMUST00000162300.1
glutamate receptor interacting protein 2
chr15_+_99670574 0.09 ENSMUST00000023758.7
acid-sensing (proton-gated) ion channel 1
chr3_-_108200807 0.09 ENSMUST00000106655.1
ENSMUST00000065664.6
cytochrome b-561 domain containing 1
chr2_-_85196697 0.09 ENSMUST00000099930.2
ENSMUST00000111601.1
leucine rich repeat containing 55
chr9_-_52679429 0.08 ENSMUST00000098768.2
expressed sequence AI593442
chr2_+_25180737 0.07 ENSMUST00000104999.2
Notch-regulated ankyrin repeat protein
chr5_+_32136458 0.07 ENSMUST00000031017.9
fos-like antigen 2
chr3_+_96696379 0.06 ENSMUST00000107076.3
protein inhibitor of activated STAT 3
chr15_+_99055164 0.06 ENSMUST00000047104.7
ENSMUST00000024249.3
peripherin
chr18_+_43963234 0.05 ENSMUST00000069245.7
serine peptidase inhibitor, Kazal type 5
chr12_+_87954475 0.05 ENSMUST00000181843.1
ENSMUST00000180706.1
ENSMUST00000181394.1
ENSMUST00000110145.4
ENSMUST00000181326.1
ENSMUST00000181300.1
predicted gene 2042
chr11_+_49247462 0.05 ENSMUST00000109194.1
mannoside acetylglucosaminyltransferase 1
chr12_+_69963452 0.05 ENSMUST00000110560.1
predicted gene 3086
chr17_+_16972910 0.04 ENSMUST00000071374.5
cDNA sequence BC002059
chr12_+_38780817 0.04 ENSMUST00000160856.1
ets variant gene 1
chr1_-_34439672 0.04 ENSMUST00000042493.8
coiled-coil domain containing 115
chr8_+_45627946 0.03 ENSMUST00000145458.1
sorbin and SH3 domain containing 2
chr11_+_110968016 0.03 ENSMUST00000106636.1
ENSMUST00000180023.1
potassium inwardly-rectifying channel, subfamily J, member 16
chr8_+_11556061 0.02 ENSMUST00000054399.4
inhibitor of growth family, member 1
chr7_+_82867327 0.02 ENSMUST00000082237.5
mex3 homolog B (C. elegans)
chr12_+_87954080 0.01 ENSMUST00000180803.1
ENSMUST00000180707.1
ENSMUST00000181347.1
predicted gene 2042
chr4_+_62525369 0.01 ENSMUST00000062145.1
RIKEN cDNA 4933430I17 gene
chr8_+_45628176 0.01 ENSMUST00000130850.1
sorbin and SH3 domain containing 2
chrX_-_73115363 0.01 ENSMUST00000114520.1
X-linked lymphocyte-regulated 5A
chr5_-_137533297 0.01 ENSMUST00000111020.1
ENSMUST00000111023.1
guanine nucleotide binding protein (G protein), beta 2
chr1_-_181853183 0.01 ENSMUST00000070987.7
predicted gene 5533
chr10_+_88091070 0.01 ENSMUST00000048621.7
pro-melanin-concentrating hormone
chr8_+_46490968 0.01 ENSMUST00000110372.1
ENSMUST00000130563.1
acyl-CoA synthetase long-chain family member 1
chr19_-_39740999 0.01 ENSMUST00000099472.3
cytochrome P450, family 2, subfamily c, polypeptide 68
chr11_-_53859187 0.01 ENSMUST00000117316.1
ENSMUST00000120776.1
ENSMUST00000121435.1
predicted gene 12216
chr1_+_106938953 0.00 ENSMUST00000112724.2
serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
chr16_+_32419696 0.00 ENSMUST00000014220.8
ENSMUST00000080316.7
Tctex1 domain containing 2
chr2_-_34755229 0.00 ENSMUST00000102800.1
GTPase activating protein and VPS9 domains 1
chr11_-_103697661 0.00 ENSMUST00000107013.2
golgi SNAP receptor complex member 2

Network of associatons between targets according to the STRING database.

First level regulatory network of Nkx2-4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 3.8 GO:0007341 penetration of zona pellucida(GO:0007341)
0.4 1.1 GO:0008588 release of cytoplasmic sequestered NF-kappaB(GO:0008588)
0.2 0.3 GO:0030908 intein-mediated protein splicing(GO:0016539) protein splicing(GO:0030908)
0.2 0.5 GO:1904975 response to bleomycin(GO:1904975) cellular response to bleomycin(GO:1904976)
0.1 1.5 GO:0048859 formation of anatomical boundary(GO:0048859)
0.1 0.4 GO:0070340 detection of bacterial lipopeptide(GO:0070340) response to triacyl bacterial lipopeptide(GO:0071725) cellular response to triacyl bacterial lipopeptide(GO:0071727)
0.1 0.5 GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919)
0.1 0.4 GO:0021530 spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.1 0.5 GO:0006177 GMP biosynthetic process(GO:0006177)
0.1 0.8 GO:0071802 negative regulation of podosome assembly(GO:0071802)
0.1 0.3 GO:1904139 microglial cell migration(GO:1904124) regulation of microglial cell migration(GO:1904139)
0.1 0.4 GO:0051902 negative regulation of mitochondrial depolarization(GO:0051902)
0.1 0.3 GO:0021778 oligodendrocyte cell fate specification(GO:0021778) oligodendrocyte cell fate commitment(GO:0021779) glial cell fate specification(GO:0021780)
0.1 2.0 GO:0097320 membrane tubulation(GO:0097320)
0.1 0.3 GO:0038032 termination of G-protein coupled receptor signaling pathway(GO:0038032)
0.1 1.9 GO:0019373 epoxygenase P450 pathway(GO:0019373)
0.1 1.2 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.1 0.3 GO:1904058 positive regulation of sensory perception of pain(GO:1904058)
0.0 0.4 GO:0015705 iodide transport(GO:0015705)
0.0 1.1 GO:0015701 bicarbonate transport(GO:0015701)
0.0 0.4 GO:0098953 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 0.7 GO:0001675 acrosome assembly(GO:0001675)
0.0 0.4 GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction(GO:1901844) negative regulation of relaxation of cardiac muscle(GO:1901898)
0.0 4.0 GO:0007586 digestion(GO:0007586)
0.0 0.5 GO:0042428 serotonin metabolic process(GO:0042428)
0.0 0.9 GO:0010107 potassium ion import(GO:0010107)
0.0 0.9 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.5 GO:0038092 nodal signaling pathway(GO:0038092)
0.0 0.1 GO:0002784 regulation of antimicrobial peptide production(GO:0002784) regulation of antibacterial peptide production(GO:0002786)
0.0 0.1 GO:0050915 sensory perception of sour taste(GO:0050915)
0.0 1.0 GO:0000266 mitochondrial fission(GO:0000266)
0.0 0.8 GO:0050907 detection of chemical stimulus involved in sensory perception(GO:0050907)
0.0 0.2 GO:0043249 erythrocyte maturation(GO:0043249)
0.0 0.6 GO:0048791 calcium ion-regulated exocytosis of neurotransmitter(GO:0048791)
0.0 0.1 GO:0018377 protein myristoylation(GO:0018377)
0.0 0.1 GO:0006049 UDP-N-acetylglucosamine catabolic process(GO:0006049)
0.0 1.9 GO:0030177 positive regulation of Wnt signaling pathway(GO:0030177)
0.0 0.2 GO:0048935 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.0 0.3 GO:0043374 CD8-positive, alpha-beta T cell differentiation(GO:0043374)
0.0 0.1 GO:0033280 response to vitamin D(GO:0033280)
0.0 0.3 GO:0050832 defense response to fungus(GO:0050832)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 3.2 GO:0002102 podosome(GO:0002102)
0.1 1.1 GO:0031616 spindle pole centrosome(GO:0031616)
0.0 4.0 GO:0072562 blood microparticle(GO:0072562)
0.0 0.4 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.7 GO:0002080 acrosomal membrane(GO:0002080)
0.0 0.3 GO:0005639 integral component of nuclear inner membrane(GO:0005639) intrinsic component of nuclear inner membrane(GO:0031229)
0.0 3.3 GO:0005741 mitochondrial outer membrane(GO:0005741)
0.0 0.1 GO:0044299 C-fiber(GO:0044299)
0.0 0.1 GO:0097209 epidermal lamellar body(GO:0097209)
0.0 1.3 GO:0016605 PML body(GO:0016605)
0.0 0.9 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0035663 Toll-like receptor 2 binding(GO:0035663)
0.1 0.5 GO:0003938 IMP dehydrogenase activity(GO:0003938)
0.1 0.5 GO:0035241 protein-arginine omega-N monomethyltransferase activity(GO:0035241) histone methyltransferase activity (H4-R3 specific)(GO:0044020)
0.1 0.3 GO:0001537 N-acetylgalactosamine 4-O-sulfotransferase activity(GO:0001537)
0.1 0.4 GO:0031811 G-protein coupled nucleotide receptor binding(GO:0031811) P2Y1 nucleotide receptor binding(GO:0031812)
0.1 1.1 GO:0008510 sodium:bicarbonate symporter activity(GO:0008510)
0.1 1.9 GO:0008392 arachidonic acid epoxygenase activity(GO:0008392)
0.0 0.3 GO:0005113 patched binding(GO:0005113)
0.0 0.4 GO:0071253 connexin binding(GO:0071253)
0.0 0.6 GO:0042043 neurexin family protein binding(GO:0042043)
0.0 0.3 GO:0035381 extracellular ATP-gated cation channel activity(GO:0004931) ATP-gated ion channel activity(GO:0035381)
0.0 0.4 GO:0001730 2'-5'-oligoadenylate synthetase activity(GO:0001730)
0.0 0.3 GO:0001609 G-protein coupled adenosine receptor activity(GO:0001609)
0.0 0.2 GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)
0.0 0.1 GO:0031705 bombesin receptor binding(GO:0031705)
0.0 1.1 GO:0005164 tumor necrosis factor receptor binding(GO:0005164)
0.0 0.4 GO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)
0.0 0.5 GO:0035497 cAMP response element binding(GO:0035497)
0.0 1.5 GO:0005160 transforming growth factor beta receptor binding(GO:0005160)
0.0 0.8 GO:0030676 Rac guanyl-nucleotide exchange factor activity(GO:0030676)
0.0 4.0 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.0 0.6 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 1.2 GO:0005507 copper ion binding(GO:0005507)
0.0 0.1 GO:0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity(GO:0003827)
0.0 0.4 GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity(GO:0004115)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID AURORA A PATHWAY Aurora A signaling
0.0 0.5 ST STAT3 PATHWAY STAT3 Pathway
0.0 0.5 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 1.4 PID RHOA REG PATHWAY Regulation of RhoA activity
0.0 0.4 PID TOLL ENDOGENOUS PATHWAY Endogenous TLR signaling
0.0 0.4 ST GA12 PATHWAY G alpha 12 Pathway
0.0 0.3 PID HEDGEHOG 2PATHWAY Signaling events mediated by the Hedgehog family
0.0 0.4 PID INTEGRIN2 PATHWAY Beta2 integrin cell surface interactions

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME BETA DEFENSINS Genes involved in Beta defensins
0.0 0.5 REACTOME PURINE RIBONUCLEOSIDE MONOPHOSPHATE BIOSYNTHESIS Genes involved in Purine ribonucleoside monophosphate biosynthesis
0.0 0.5 REACTOME P2Y RECEPTORS Genes involved in P2Y receptors
0.0 0.4 REACTOME PECAM1 INTERACTIONS Genes involved in PECAM1 interactions
0.0 1.5 REACTOME INTERFERON GAMMA SIGNALING Genes involved in Interferon gamma signaling
0.0 0.9 REACTOME INHIBITION OF VOLTAGE GATED CA2 CHANNELS VIA GBETA GAMMA SUBUNITS Genes involved in Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits
0.0 1.4 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.0 0.5 REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity
0.0 0.5 REACTOME MYOGENESIS Genes involved in Myogenesis
0.0 0.4 REACTOME DARPP 32 EVENTS Genes involved in DARPP-32 events