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GSE58827: Dynamics of the Mouse Liver
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Results for UGCAUUG
Z-value: 0.28
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miRNA associated with seed UGCAUUG
| Name | miRBASE accession |
|---|---|
|
mmu-miR-33-5p
|
MIMAT0000667 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr1_+_136624901 Show fit | 0.36 |
ENSMUST00000047734.8
ENSMUST00000112046.1 |
zinc finger protein 281 |
|
| chr2_+_96318014 Show fit | 0.34 |
ENSMUST00000135431.1
ENSMUST00000162807.2 |
leucine rich repeat containing 4C |
|
| chr17_-_91092715 Show fit | 0.31 |
ENSMUST00000160800.2
ENSMUST00000159778.1 ENSMUST00000160844.3 |
neurexin I |
|
| chr5_-_8997324 Show fit | 0.27 |
ENSMUST00000003720.4
|
carnitine O-octanoyltransferase |
|
| chr9_+_74861888 Show fit | 0.25 |
ENSMUST00000056006.9
|
one cut domain, family member 1 |
|
| chr4_+_138967112 Show fit | 0.24 |
ENSMUST00000116094.2
|
ring finger protein 186 |
|
| chr9_+_68653761 Show fit | 0.24 |
ENSMUST00000034766.7
|
RAR-related orphan receptor alpha |
|
| chr12_+_103532435 Show fit | 0.23 |
ENSMUST00000021631.5
|
protein phosphatase 4, regulatory subunit 4 |
|
| chr18_+_64340225 Show fit | 0.23 |
ENSMUST00000175965.2
ENSMUST00000115145.3 |
one cut domain, family member 2 |
|
| chr1_+_187997821 Show fit | 0.19 |
ENSMUST00000027906.6
|
estrogen-related receptor gamma |
Network of associatons between targets according to the STRING database.
First level regulatory network of UGCAUUG
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0009437 | carnitine metabolic process(GO:0009437) |
| 0.0 | 0.4 | GO:0010172 | embryonic body morphogenesis(GO:0010172) |
| 0.1 | 0.3 | GO:0090126 | protein complex assembly involved in synapse maturation(GO:0090126) |
| 0.0 | 0.3 | GO:0032515 | negative regulation of phosphoprotein phosphatase activity(GO:0032515) |
| 0.1 | 0.2 | GO:2000863 | positive regulation of estrogen secretion(GO:2000863) |
| 0.0 | 0.2 | GO:0021650 | vestibulocochlear nerve formation(GO:0021650) |
| 0.0 | 0.2 | GO:0048934 | peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935) |
| 0.0 | 0.2 | GO:0036315 | cellular response to sterol(GO:0036315) |
| 0.0 | 0.1 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 0.1 | GO:0086046 | membrane depolarization during SA node cell action potential(GO:0086046) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0036057 | filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057) |
| 0.0 | 0.1 | GO:0005940 | septin ring(GO:0005940) |
| 0.0 | 0.1 | GO:0030906 | retromer, cargo-selective complex(GO:0030906) |
| 0.0 | 0.1 | GO:0032983 | kainate selective glutamate receptor complex(GO:0032983) |
| 0.0 | 0.1 | GO:0097524 | sperm plasma membrane(GO:0097524) |
| 0.0 | 0.1 | GO:1990454 | L-type voltage-gated calcium channel complex(GO:1990454) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | GO:0016406 | carnitine O-acyltransferase activity(GO:0016406) |
| 0.0 | 0.3 | GO:0097109 | neuroligin family protein binding(GO:0097109) |
| 0.0 | 0.2 | GO:0008142 | oxysterol binding(GO:0008142) |
| 0.0 | 0.2 | GO:1901612 | cardiolipin binding(GO:1901612) |
| 0.0 | 0.1 | GO:0046997 | oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor(GO:0046997) |
| 0.0 | 0.1 | GO:0030226 | apolipoprotein receptor activity(GO:0030226) apolipoprotein A-I receptor activity(GO:0034188) phosphatidylserine-translocating ATPase activity(GO:0090556) |
| 0.0 | 0.1 | GO:0032810 | sterol response element binding(GO:0032810) |
| 0.0 | 0.1 | GO:0030617 | transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity(GO:0030617) |
| 0.0 | 0.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 0.1 | GO:0004176 | ATP-dependent peptidase activity(GO:0004176) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | REACTOME RORA ACTIVATES CIRCADIAN EXPRESSION | Genes involved in RORA Activates Circadian Expression |