avrg: GSE58827: Dynamics of the Mouse Liver
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
---|---|
Day_-2_1 | Day_-2 |
Day_-2_2 | Day_-2 |
Day_-2_3 | Day_-2 |
Day_0_1 | Day_ |
Day_0_2 | Day_ |
Day_0_3 | Day_ |
Day_1_1 | Day_1 |
Day_1_2 | Day_1 |
Day_1_3 | Day_1 |
Day_3_1 | Day_3 |
Day_3_2 | Day_3 |
Day_3_3 | Day_3 |
Day_5_1 | Day_5 |
Day_5_2 | Day_5 |
Day_5_3 | Day_5 |
Day_10_1 | Day_10 |
Day_10_2 | Day_10 |
Day_10_3 | Day_10 |
Day_15_1 | Day_!5 |
Day_15_2 | Day_!5 |
Day_15_3 | Day_!5 |
Day_20_1 | Day_20 |
Day_20_2 | Day_20 |
Day_20_3 | Day_20 |
Day_25_1 | Day_25 |
Day_25_2 | Day_25 |
Day_25_3 | Day_25 |
Day_30_1 | Day_30 |
Day_30_2 | Day_30 |
Day_30_3 | Day_30 |
Day_45_1 | Day_45 |
Day_45_2 | Day_45 |
Day_45_3 | Day_45 |
Day_60_1 | Day_60 |
Day_60_2 | Day_60 |
Day_60_3 | Day_60 |
Motif name | Z-value | Associated genes | Profile | Logo |
---|---|---|---|---|
Hnf4a | 7.61 |
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Nr2e1 | 7.31 |
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E2f2_E2f5 | 7.12 |
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E2f1 | 6.52 |
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Tal1 | 6.09 |
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Gata2_Gata1 | 5.58 |
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Pou1f1 | 5.28 |
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Ybx1_Nfya_Nfyb_Nfyc_Cebpz | 5.09 |
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Pparg_Rxrg | 4.93 |
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Spic | 4.87 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.