avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Atf1 | mm10_v2_chr15_+_100227819_100227856 | 0.44 | 7.2e-03 | Click! |
Creb5 | mm10_v2_chr6_+_53573364_53573394 | -0.31 | 6.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_75571522 Show fit | 5.14 |
ENSMUST00000143226.1
ENSMUST00000124259.1 |
gamma-glutamyltransferase 1 |
|
chr3_+_135212557 Show fit | 3.95 |
ENSMUST00000062893.7
|
centromere protein E |
|
chr7_-_142095266 Show fit | 3.69 |
ENSMUST00000039926.3
|
dual specificity phosphatase 8 |
|
chr6_-_86669136 Show fit | 3.40 |
ENSMUST00000001184.7
|
MAX dimerization protein 1 |
|
chr2_+_109280738 Show fit | 3.17 |
ENSMUST00000028527.7
|
kinesin family member 18A |
|
chr14_-_87141206 Show fit | 3.09 |
ENSMUST00000022599.7
|
diaphanous homolog 3 (Drosophila) |
|
chr8_-_92355764 Show fit | 3.09 |
ENSMUST00000180102.1
ENSMUST00000179421.1 ENSMUST00000179222.1 ENSMUST00000179029.1 |
RIKEN cDNA 4933436C20 gene |
|
chr14_-_87141114 Show fit | 2.99 |
ENSMUST00000168889.1
|
diaphanous homolog 3 (Drosophila) |
|
chr12_+_4082574 Show fit | 2.92 |
ENSMUST00000020986.7
|
DnaJ (Hsp40) homolog, subfamily C, member 27 |
|
chr8_-_85365341 Show fit | 2.66 |
ENSMUST00000121972.1
|
myosin light chain kinase 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 8.1 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
0.9 | 5.3 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
0.0 | 5.3 | GO:0016579 | protein deubiquitination(GO:0016579) |
1.7 | 5.1 | GO:0045204 | MAPK export from nucleus(GO:0045204) |
0.6 | 5.1 | GO:1901748 | leukotriene D4 metabolic process(GO:1901748) leukotriene D4 biosynthetic process(GO:1901750) |
0.0 | 5.0 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.7 | 4.9 | GO:0046601 | positive regulation of centriole replication(GO:0046601) de novo centriole assembly(GO:0098535) |
0.7 | 4.0 | GO:0051987 | positive regulation of attachment of spindle microtubules to kinetochore(GO:0051987) |
0.1 | 3.7 | GO:0070918 | dsRNA fragmentation(GO:0031050) production of miRNAs involved in gene silencing by miRNA(GO:0035196) production of small RNA involved in gene silencing by RNA(GO:0070918) |
0.2 | 3.4 | GO:0000188 | inactivation of MAPK activity(GO:0000188) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.7 | GO:0015934 | large ribosomal subunit(GO:0015934) |
0.5 | 6.8 | GO:1990023 | mitotic spindle midzone(GO:1990023) |
0.3 | 6.2 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.1 | 5.0 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.8 | 4.9 | GO:0098536 | deuterosome(GO:0098536) |
0.0 | 4.1 | GO:0000776 | kinetochore(GO:0000776) |
0.0 | 3.3 | GO:0032587 | ruffle membrane(GO:0032587) |
0.2 | 3.1 | GO:0000164 | protein phosphatase type 1 complex(GO:0000164) |
0.0 | 3.0 | GO:0005844 | polysome(GO:0005844) |
0.0 | 3.0 | GO:0016605 | PML body(GO:0016605) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.2 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.8 | 5.3 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.1 | 5.3 | GO:0004843 | thiol-dependent ubiquitin-specific protease activity(GO:0004843) |
0.0 | 5.3 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.4 | 5.1 | GO:0036374 | glutathione hydrolase activity(GO:0036374) |
0.5 | 4.7 | GO:0043023 | ribosomal large subunit binding(GO:0043023) |
0.0 | 4.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.8 | 4.0 | GO:0043515 | kinetochore binding(GO:0043515) |
0.0 | 3.8 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.2 | 3.6 | GO:0017017 | MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.9 | PID BARD1 PATHWAY | BARD1 signaling events |
0.1 | 4.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 3.9 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.0 | 3.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.4 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.0 | 2.3 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 2.0 | PID BMP PATHWAY | BMP receptor signaling |
0.1 | 1.8 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 1.7 | PID P53 REGULATION PATHWAY | p53 pathway |
0.1 | 1.6 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 6.2 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 6.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.1 | 5.0 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.2 | 4.4 | REACTOME KINESINS | Genes involved in Kinesins |
0.1 | 4.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 3.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 3.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.0 | 3.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 2.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |