avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Atf3 | mm10_v2_chr1_-_191183244_191183340 | -0.60 | 1.3e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_97417730 Show fit | 5.76 |
ENSMUST00000043077.7
|
thyroid hormone responsive |
|
chr4_-_122961173 Show fit | 5.14 |
ENSMUST00000030408.5
ENSMUST00000127047.1 |
major facilitator superfamily domain containing 2A |
|
chr19_+_39510844 Show fit | 4.97 |
ENSMUST00000025968.4
|
cytochrome P450, family 2, subfamily c, polypeptide 39 |
|
chr4_-_62087261 Show fit | 4.39 |
ENSMUST00000107488.3
ENSMUST00000107472.1 ENSMUST00000084531.4 |
major urinary protein 3 |
|
chr9_-_48605147 Show fit | 4.34 |
ENSMUST00000034808.5
ENSMUST00000119426.1 |
nicotinamide N-methyltransferase |
|
chr3_-_81975742 Show fit | 4.33 |
ENSMUST00000029645.8
|
tryptophan 2,3-dioxygenase |
|
chr11_-_120661175 Show fit | 4.31 |
ENSMUST00000150458.1
|
notum pectinacetylesterase homolog (Drosophila) |
|
chr2_+_67748212 Show fit | 4.11 |
ENSMUST00000180887.1
|
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 |
|
chr17_+_79626669 Show fit | 3.97 |
ENSMUST00000086570.1
|
RIKEN cDNA 4921513D11 gene |
|
chr12_-_103657095 Show fit | 3.75 |
ENSMUST00000152517.1
|
serine (or cysteine) peptidase inhibitor, clade A, member 6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 13.2 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
0.6 | 12.3 | GO:0045717 | negative regulation of fatty acid biosynthetic process(GO:0045717) |
0.4 | 8.6 | GO:0048642 | negative regulation of skeletal muscle tissue development(GO:0048642) |
0.6 | 7.3 | GO:0043562 | cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562) |
0.3 | 7.0 | GO:0008211 | glucocorticoid metabolic process(GO:0008211) |
2.1 | 6.3 | GO:0009753 | response to jasmonic acid(GO:0009753) cellular response to jasmonic acid stimulus(GO:0071395) |
0.2 | 6.3 | GO:0010866 | regulation of triglyceride biosynthetic process(GO:0010866) |
0.2 | 6.0 | GO:0080184 | response to phenylpropanoid(GO:0080184) |
0.3 | 5.4 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.6 | 5.2 | GO:0046146 | tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 25.8 | GO:0005739 | mitochondrion(GO:0005739) |
0.1 | 18.8 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
1.3 | 10.6 | GO:0032937 | SREBP-SCAP-Insig complex(GO:0032937) |
0.1 | 10.5 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
0.0 | 9.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.7 | 8.0 | GO:0042612 | MHC class I protein complex(GO:0042612) |
0.3 | 8.0 | GO:0005782 | peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907) |
0.4 | 7.0 | GO:0000421 | autophagosome membrane(GO:0000421) |
0.0 | 7.0 | GO:0031965 | nuclear membrane(GO:0031965) |
0.1 | 6.3 | GO:0070469 | respiratory chain(GO:0070469) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 21.3 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
0.3 | 8.7 | GO:0043295 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
0.4 | 8.4 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
1.4 | 8.2 | GO:0033695 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.6 | 8.0 | GO:0030881 | beta-2-microglobulin binding(GO:0030881) |
0.1 | 7.0 | GO:0008565 | protein transporter activity(GO:0008565) |
1.7 | 6.7 | GO:0004833 | tryptophan 2,3-dioxygenase activity(GO:0004833) |
0.1 | 6.7 | GO:0015485 | cholesterol binding(GO:0015485) |
0.1 | 6.4 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
2.1 | 6.3 | GO:0047006 | 17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity(GO:0047006) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.9 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 5.1 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 4.8 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 3.7 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.1 | 3.3 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 3.1 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.2 | 3.0 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 2.9 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
0.1 | 2.8 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 2.3 | PID NFKAPPAB ATYPICAL PATHWAY | Atypical NF-kappaB pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.6 | 10.8 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.4 | 9.7 | REACTOME ALPHA LINOLENIC ACID ALA METABOLISM | Genes involved in alpha-linolenic acid (ALA) metabolism |
0.1 | 9.6 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.2 | 7.8 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
0.5 | 7.5 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.3 | 6.9 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
0.2 | 6.7 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
0.1 | 6.2 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
2.0 | 5.9 | REACTOME XENOBIOTICS | Genes involved in Xenobiotics |